Table of contents MiGA-Docker Installing Docker Installing Docker for Windows Installing Docker for Mac OS Installing Docker for Linux Creating the MiGA Container Locally Using Docker Commands Installing MiGA using Singularity Starting & Stopping MiGA Add a Reference Database (Optional) Add Reference Databases from the Command Line Add Reference Databases using MiGA-Web MiGA Projects Get Example Data MiGA-Web Projects Create A Genome Project Classifying Genomes Using Your Own Project Using a Reference Database Create a Clade Project Assemble a Genome MiGA-CLI Projects Introduction Create a Genome Project Classifying Genomes Using Your Own Project Using a Reference Database Create a Clade Project Assemble a Genome Scripts for Cluster Projects Installing TypeMat_Lite Submit a Genomes Project Add a Query Sequence to a Genomes Project Add Classification to a Genome Project Submitting a Genome Project with Classification Submitting a Clade Project Submitting an Assembly Project Submitting Large Jobs Exploring Results Exploring Results