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Converting zcall output tped and tfam files to vcf #9

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gorawarashubham opened this issue Jul 9, 2020 · 0 comments
Open

Converting zcall output tped and tfam files to vcf #9

gorawarashubham opened this issue Jul 9, 2020 · 0 comments

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@gorawarashubham
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Hi, first of all amazing project.

Could you please advise how to convert zcall output .tped and .tfam files, in the format of A,B alleles back to vcf format in 0/1 format. I tried the plink commands with --recode vcf, but didn't work as expected. Any advise is highly appreciated. Thanks in advance!
@gorawarashubham gorawarashubham changed the title Converting zcall cout: tped and tfam file to vcf Converting zcall outut tped and tfam files to vcf Jul 9, 2020
@gorawarashubham gorawarashubham changed the title Converting zcall outut tped and tfam files to vcf Converting zcall output tped and tfam files to vcf Jul 9, 2020
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@gorawarashubham