diff --git a/minimap2.1 b/minimap2.1 index 666de78f..ca4a27b6 100644 --- a/minimap2.1 +++ b/minimap2.1 @@ -1,4 +1,4 @@ -.TH minimap2 1 "18 November 2021" "minimap2-2.23 (r1111)" "Bioinformatics tools" +.TH minimap2 1 "18 December 2021" "minimap2-2.24 (r1121)" "Bioinformatics tools" .SH NAME .PP minimap2 - mapping and alignment between collections of DNA sequences @@ -77,7 +77,7 @@ SAM format. Minimizer k-mer length [15] .TP .BI -w \ INT -Minimizer window size [2/3 of k-mer length]. A minimizer is the smallest k-mer +Minimizer window size [10]. A minimizer is the smallest k-mer in a window of w consecutive k-mers. .TP .B -H @@ -606,7 +606,7 @@ Long-read splice alignment for PacBio CCS reads .B sr Short single-end reads without splicing .RB ( -k21 -.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m20 +.B -w11 --sr --frag=yes -A2 -B8 -O12,32 -E2,1 -b0 -r100 -p.5 -N20 -f1000,5000 -n2 -m25 .B -s40 -g100 -2K50m --heap-sort=yes .BR --secondary=no ). .TP