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Segmentation masks have a different shape than the input CT scan? #81

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chongduan opened this issue Aug 1, 2024 · 1 comment
Open

Segmentation masks have a different shape than the input CT scan? #81

chongduan opened this issue Aug 1, 2024 · 1 comment

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@chongduan
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Hi, I am using the pred_pseudo.py function to process a CT scan (from one of the Decathlon datasets), and I noticed that the output masks have a different shape than the input CT scan. I imagine this must be due to some transforms in the process, but I could not figure out which step is causing this shape inconsistency. Any help will be greatly appreciated!
@ljwztc
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ljwztc commented Aug 5, 2024

Invertd() API in monai is used for save result. If you rigorously follow the pipeline in README, it should generate shape with same shape as input.

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@chongduan @ljwztc