From 2c36f82a3c05ce9060766346916cbae83f0bcc3f Mon Sep 17 00:00:00 2001
From: Michael Folz <folz@med.uni-frankfurt.de>
Date: Wed, 15 Jan 2025 14:16:09 +0100
Subject: [PATCH] #428 - Read document ids from downloaded files in github
 integration tests

- use grep/awk to extract the first id from an ontology and a codeable_concept file to use for checks
---
 .github/scripts/post-elastic-test-queries.sh | 25 +++++++++++++++++---
 1 file changed, 22 insertions(+), 3 deletions(-)

diff --git a/.github/scripts/post-elastic-test-queries.sh b/.github/scripts/post-elastic-test-queries.sh
index e6db4a06..a917705d 100755
--- a/.github/scripts/post-elastic-test-queries.sh
+++ b/.github/scripts/post-elastic-test-queries.sh
@@ -2,7 +2,10 @@
 
 curl "$ELASTIC_HOST/_cat/indices"
 
-response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/ontology/_doc/9c2328b0-ac4e-3d69-8f2f-d8b905875348")
+onto_example_id=$(grep '"_id":' elastic/onto_es__ontology_* | awk -F'"_id": "' '{print $2}' | awk -F'"' '{print $1}' | head -n 1)
+cc_example_id=$(grep '"_id":' elastic/onto_es__codeable_concept_* | awk -F'"_id": "' '{print $2}' | awk -F'"' '{print $1}' | head -n 1)
+
+response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/ontology/_doc/$onto_example_id")
 http_code="${response: -3}"
 json_body=$(cat response_body)
 
@@ -19,7 +22,7 @@ else
 fi
 
 
-response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/codeable_concept/_doc/d676be36-7f34-3ea6-9838-c0c9e1ca3dcc")
+response=$(curl -s -w "%{http_code}" -o response_body "$ELASTIC_HOST/codeable_concept/_doc/$cc_example_id")
 http_code="${response: -3}"
 json_body=$(cat response_body)
 
@@ -60,6 +63,22 @@ else
     exit 1
 fi
 
+response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/terminology/entry/$onto_example_id")
+http_code="${response: -3}"
+json_body=$(cat response_body)
+
+if [ "$http_code" -eq 200 ]; then
+    if echo "$json_body" | jq '.totalHits > 0' | grep -q true; then
+        echo "OK response with non-empty array"
+    else
+        echo "Empty or nonexistent response"
+        exit 1
+    fi
+else
+    echo "Response code $http_code"
+    exit 1
+fi
+
 response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/codeable-concept/entry/search?searchterm=Vectorcardiogram")
 http_code="${response: -3}"
 json_body=$(cat response_body)
@@ -76,7 +95,7 @@ else
     exit 1
 fi
 
-response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/codeable-concept/entry/d676be36-7f34-3ea6-9838-c0c9e1ca3dcc")
+response=$(curl -s -w "%{http_code}" --header "Authorization: Bearer $access_token" -o response_body "http://localhost:8091/api/v4/codeable-concept/entry/$cc_example_id")
 http_code="${response: -3}"
 json_body=$(cat response_body)