diff --git a/rules/0_preprocessing/make_output_list_fcts.rules b/rules/0_preprocessing/make_output_list_fcts.rules index 7bd7806f..15fb231b 100644 --- a/rules/0_preprocessing/make_output_list_fcts.rules +++ b/rules/0_preprocessing/make_output_list_fcts.rules @@ -203,7 +203,7 @@ def phyloseq_output_list(): output = basic_plots_list() output.append(phyloseq) if config["filtered_phyloseq_output"] == True: - output.append(phyloseq) + output.append(phyloseq_filt) if config["transposed_tables"] == True: output.append(transposed_output) return(output)