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compare two samples #11

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vang42 opened this issue May 11, 2020 · 1 comment
Open

compare two samples #11

vang42 opened this issue May 11, 2020 · 1 comment
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feature_request Issues request as new feature

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@vang42
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vang42 commented May 11, 2020 •
edited by micknudsen
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Give two bam and one bed as input. Calculate the number of shared positions with more than xx depth. Calculate the number of identical positions with identical genotype with more than xx depth.
@micknudsen micknudsen added the feature_request Issues request as new feature label May 12, 2020
@micknudsen
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Extracting snps-genotyped from the result after running snpahoy --minimum_coverage xx somatic ... gives the number of SNP positions with read depth xx in both samples.

The second part is a genuinely new feature. I will go ahead and implement that.

@micknudsen micknudsen modified the milestone: v0.4.1 May 27, 2020
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