diff --git a/deprecated-list.html b/deprecated-list.html index b9c123e..efdb890 100644 --- a/deprecated-list.html +++ b/deprecated-list.html @@ -407,13 +407,14 @@

Contents

org.micromanager.PropertyMap.copy() -org.micromanager.data.Coords.copy() -
Use copyBuilder instead
+org.micromanager.acquisition.SequenceSettings.copy() +
When used correctly, SequenceSettings are immutable. + If you really need a copy, use copyBuilder().build();
-org.micromanager.data.SummaryMetadata.copy() -
- Use SummaryMetadata.Builder.copyBuilder instead
+org.micromanager.data.Coords.copy() +
Use copyBuilder instead
@@ -425,9 +426,8 @@

Contents

-org.micromanager.acquisition.SequenceSettings.copy() -
When used correctly, SequenceSettings are immutable. - If you really need a copy, use copyBuilder().build();
+org.micromanager.data.SummaryMetadata.copy() +
- Use SummaryMetadata.Builder.copyBuilder instead
diff --git a/org/micromanager/class-use/PropertyMap.html b/org/micromanager/class-use/PropertyMap.html index 1e79ae5..fd0f061 100644 --- a/org/micromanager/class-use/PropertyMap.html +++ b/org/micromanager/class-use/PropertyMap.html @@ -140,29 +140,29 @@

Uses of -static PropertyMap -PropertyMaps.emptyPropertyMap() -
Return the empty property map.
- - - PropertyMap PropertyManager.emptyPropertyMap()
Returns an empty property map.
- + static PropertyMap -PropertyMaps.fromJSON(java.lang.String json) -
Create a property map from its JSON-serialized form.
+PropertyMaps.emptyPropertyMap() +
Return the empty property map.
- + PropertyMap PropertyManager.fromJSON(java.lang.String json)
Creates a property map from its JSON-serialized form.
+ +static PropertyMap +PropertyMaps.fromJSON(java.lang.String json) +
Create a property map from its JSON-serialized form.
+ + PropertyMap PropertyMap.getPropertyMap(java.lang.String key) @@ -175,14 +175,14 @@

Uses of PropertyMap aDefault)  -static PropertyMap -PropertyMaps.loadJSON(java.io.File file) +PropertyMap +PropertyManager.loadJSON(java.io.File file)
Create a property map from its JSON-serialized form stored in a file.
-PropertyMap -PropertyManager.loadJSON(java.io.File file) +static PropertyMap +PropertyMaps.loadJSON(java.io.File file)
Create a property map from its JSON-serialized form stored in a file.
@@ -194,20 +194,20 @@

Uses of PropertyMap -MultiStagePosition.toPropertyMap() -
Returns a propertymap describing this MultiStagePosition.
+PositionList.toPropertyMap() +
Creates a PropertyMap from this PositionList.
PropertyMap -StagePosition.toPropertyMap() -
Returns this StagePosition instance as a PropertyMap.
+MultiStagePosition.toPropertyMap() +
Returns a propertymap describing this MultiStagePosition.
PropertyMap -PositionList.toPropertyMap() -
Creates a PropertyMap from this PositionList.
+StagePosition.toPropertyMap() +
Returns this StagePosition instance as a PropertyMap.
@@ -356,14 +356,14 @@

Uses of PropertyMap -SummaryMetadata.getUserData() -
Any general-purpose user meta data.
+Metadata.getUserData() +
Arbitrary additional metadata added by third-party code.
PropertyMap -Metadata.getUserData() -
Arbitrary additional metadata added by third-party code.
+SummaryMetadata.getUserData() +
Any general-purpose user meta data.
@@ -431,16 +431,6 @@

Uses of -SummaryMetadata.Builder -SummaryMetadata.Builder.userData(PropertyMap userData)  - - -SummaryMetadata.SummaryMetadataBuilder -SummaryMetadata.SummaryMetadataBuilder.userData(PropertyMap userData) -
Deprecated. 
-  - - Metadata.Builder Metadata.Builder.userData(PropertyMap userData)
Add user-defined data.
@@ -452,6 +442,16 @@

Uses of Deprecated.    + +SummaryMetadata.Builder +SummaryMetadata.Builder.userData(PropertyMap userData)  + + +SummaryMetadata.SummaryMetadataBuilder +SummaryMetadata.SummaryMetadataBuilder.userData(PropertyMap userData) +
Deprecated. 
+  + @@ -468,13 +468,13 @@

Uses of PropertyMap -Overlay.getConfiguration() +AbstractOverlay.getConfiguration()
Return the user-customizable settings for this overlay.
PropertyMap -AbstractOverlay.getConfiguration() +Overlay.getConfiguration()
Return the user-customizable settings for this overlay.
@@ -489,13 +489,13 @@

Uses of void -Overlay.setConfiguration(PropertyMap config) +AbstractOverlay.setConfiguration(PropertyMap config)
Configure the overlay with the given parameters.
void -AbstractOverlay.setConfiguration(PropertyMap config) +Overlay.setConfiguration(PropertyMap config)
Configure the overlay with the given parameters.
diff --git a/org/micromanager/data/class-use/Coords.html b/org/micromanager/data/class-use/Coords.html index 295b642..fae88d8 100644 --- a/org/micromanager/data/class-use/Coords.html +++ b/org/micromanager/data/class-use/Coords.html @@ -252,14 +252,14 @@

Uses of void -RewritableDatastore.deleteImage(Coords coords) -
Delete an image from the Datastore.
+RewritableStorage.deleteImage(Coords coords) +
Delete an image from the Storage.
void -RewritableStorage.deleteImage(Coords coords) -
Delete an image from the Storage.
+RewritableDatastore.deleteImage(Coords coords) +
Delete an image from the Datastore.
@@ -390,14 +390,14 @@

Uses of Coords -DisplayPositionChangedEvent.getDisplayPosition() -
returns the new display position.
+DataViewer.getDisplayPosition() +
Get the coordinates for the currently displayed images.
Coords -DataViewer.getDisplayPosition() -
Get the coordinates for the currently displayed images.
+DisplayPositionChangedEvent.getDisplayPosition() +
returns the new display position.
diff --git a/org/micromanager/data/class-use/Datastore.html b/org/micromanager/data/class-use/Datastore.html index 158ecf1..64d94a7 100644 --- a/org/micromanager/data/class-use/Datastore.html +++ b/org/micromanager/data/class-use/Datastore.html @@ -268,34 +268,34 @@

Uses of Datastore -ImageOverwrittenEvent.getDatastore() -
Provides the Datastore this image was added to; potentially useful for - code that listens to events from multiple Datastores.
+DatastoreClosingEvent.getDatastore() +
Returns the Datastore that is closing.
Datastore -DatastoreClosingEvent.getDatastore() -
Returns the Datastore that is closing.
+ImageDeletedEvent.getDatastore() +
Provides the Datastore this image was added to; potentially useful for + code that listens to events from multiple Datastores.
Datastore -Annotation.getDatastore() -
Return the datastore to which this annotation is associated.
+ImageOverwrittenEvent.getDatastore() +
Provides the Datastore this image was added to; potentially useful for + code that listens to events from multiple Datastores.
Datastore -Pipeline.getDatastore() -
Get the output Datastore for this Pipeline.
+Annotation.getDatastore() +
Return the datastore to which this annotation is associated.
Datastore -ImageDeletedEvent.getDatastore() -
Provides the Datastore this image was added to; potentially useful for - code that listens to events from multiple Datastores.
+Pipeline.getDatastore() +
Get the output Datastore for this Pipeline.
diff --git a/org/micromanager/data/class-use/Image.html b/org/micromanager/data/class-use/Image.html index e113802..044b3e5 100644 --- a/org/micromanager/data/class-use/Image.html +++ b/org/micromanager/data/class-use/Image.html @@ -424,15 +424,15 @@

Uses of void -Datastore.putImage(Image image) -
Insert an image into the Datastore.
+Storage.putImage(Image image) +
Insert an Image into the Storage, so that it may be returned by later + getImage() calls.
void -Storage.putImage(Image image) -
Insert an Image into the Storage, so that it may be returned by later - getImage() calls.
+Datastore.putImage(Image image) +
Insert an image into the Datastore.
@@ -514,7 +514,7 @@

Uses of void -Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, +AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, @@ -525,7 +525,7 @@

Uses of void -AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, +Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, @@ -545,7 +545,7 @@

Uses of void -Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, +AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, @@ -556,7 +556,7 @@

Uses of void -AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, +Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, diff --git a/org/micromanager/data/class-use/SummaryMetadata.html b/org/micromanager/data/class-use/SummaryMetadata.html index 5578220..e4cdffb 100644 --- a/org/micromanager/data/class-use/SummaryMetadata.html +++ b/org/micromanager/data/class-use/SummaryMetadata.html @@ -152,15 +152,15 @@

Uses of SummaryMetadata -ProcessorContext.getSummaryMetadata() -
Access the SummaryMetadata of the Datastore that images will ultimately - be inserted into.
+DataProviderHasNewSummaryMetadataEvent.getSummaryMetadata() +
Returns Summary Metadata.
SummaryMetadata -DataProviderHasNewSummaryMetadataEvent.getSummaryMetadata() -
Returns Summary Metadata.
+ProcessorContext.getSummaryMetadata() +
Access the SummaryMetadata of the Datastore that images will ultimately + be inserted into.
diff --git a/org/micromanager/display/class-use/DataViewer.html b/org/micromanager/display/class-use/DataViewer.html index 558e52e..40f0896 100644 --- a/org/micromanager/display/class-use/DataViewer.html +++ b/org/micromanager/display/class-use/DataViewer.html @@ -146,14 +146,14 @@

Uses of DataViewer -DisplayPositionChangedEvent.getDataViewer() -
The dataViewer posting this event.
+DisplayDidShowImageEvent.getDataViewer() +
Returns the Dataviewer displaying the image.
DataViewer -DisplayDidShowImageEvent.getDataViewer() -
Returns the Dataviewer displaying the image.
+DisplayPositionChangedEvent.getDataViewer() +
The dataViewer posting this event.
@@ -235,15 +235,15 @@

Uses of -void -InspectorPanelController.attachDataViewer(DataViewer viewer)  - - abstract void AbstractInspectorPanelController.attachDataViewer(DataViewer viewer)
Attach to a data viewer.
+ +void +InspectorPanelController.attachDataViewer(DataViewer viewer)  + boolean InspectorPanelPlugin.isApplicableToDataViewer(DataViewer viewer) diff --git a/org/micromanager/display/class-use/DisplaySettings.html b/org/micromanager/display/class-use/DisplaySettings.html index 4503e29..bbd546f 100644 --- a/org/micromanager/display/class-use/DisplaySettings.html +++ b/org/micromanager/display/class-use/DisplaySettings.html @@ -126,14 +126,14 @@

Uses of DisplaySettings -DisplaySettingsChangedEvent.getDisplaySettings() -
Get the new display settings.
+DataViewer.getDisplaySettings() +
Get the current display settings.
DisplaySettings -DataViewer.getDisplaySettings() -
Get the current display settings.
+DisplaySettingsChangedEvent.getDisplaySettings() +
Get the new display settings.
@@ -226,7 +226,7 @@

Uses of void -Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, +AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, @@ -237,7 +237,7 @@

Uses of void -AbstractOverlay.paintOverlay(java.awt.Graphics2D graphicsContext, +Overlay.paintOverlay(java.awt.Graphics2D graphicsContext, java.awt.Rectangle screenRect, DisplaySettings displaySettings, java.util.List<Image> images, diff --git a/org/micromanager/display/inspector/class-use/InspectorPanelListener.html b/org/micromanager/display/inspector/class-use/InspectorPanelListener.html index 4471ff6..6866022 100644 --- a/org/micromanager/display/inspector/class-use/InspectorPanelListener.html +++ b/org/micromanager/display/inspector/class-use/InspectorPanelListener.html @@ -103,19 +103,19 @@

Uses of void -InspectorPanelController.addInspectorPanelListener(InspectorPanelListener listener)  +AbstractInspectorPanelController.addInspectorPanelListener(InspectorPanelListener listener)  void -AbstractInspectorPanelController.addInspectorPanelListener(InspectorPanelListener listener)  +InspectorPanelController.addInspectorPanelListener(InspectorPanelListener listener)  void -InspectorPanelController.removeInspectorPanelListener(InspectorPanelListener listener)  +AbstractInspectorPanelController.removeInspectorPanelListener(InspectorPanelListener listener)  void -AbstractInspectorPanelController.removeInspectorPanelListener(InspectorPanelListener listener)  +InspectorPanelController.removeInspectorPanelListener(InspectorPanelListener listener)  diff --git a/org/micromanager/display/overlay/class-use/OverlayListener.html b/org/micromanager/display/overlay/class-use/OverlayListener.html index ddb4fe2..8b111bf 100644 --- a/org/micromanager/display/overlay/class-use/OverlayListener.html +++ b/org/micromanager/display/overlay/class-use/OverlayListener.html @@ -103,25 +103,25 @@

Uses of void -Overlay.addOverlayListener(OverlayListener listener) +AbstractOverlay.addOverlayListener(OverlayListener listener)
Add a listener.
void -AbstractOverlay.addOverlayListener(OverlayListener listener) +Overlay.addOverlayListener(OverlayListener listener)
Add a listener.
void -Overlay.removeOverlayListener(OverlayListener listener) +AbstractOverlay.removeOverlayListener(OverlayListener listener)
Remove a listener.
void -AbstractOverlay.removeOverlayListener(OverlayListener listener) +Overlay.removeOverlayListener(OverlayListener listener)
Remove a listener.