install_cache_dependencies.yml

name: Cache install

on:
#  push:
#    branch:
#      - master
  workflow_dispatch:

jobs:
    cache-R-library:
        runs-on: ubuntu-latest

        steps:
        - name: Checkout repository
          uses: actions/checkout@v3
          with:
            fetch-depth: 1

        - name: Setup R
          uses: r-lib/actions/setup-r@v2

        - name: Install system dependencies
          run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev

        - name: Cache R packages 
          if: runner.os != 'Windows' 
          uses: actions/cache@v2 
          with: 
            path: ${{ env.R_LIBS_USER }} 
            key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1

        - name: Install dependencies
          run: |
            R -e 'Sys.setenv("NOT_CRAN" = TRUE)
                  install.packages(c("arrow", "gh", "remotes"))
                  Sys.unsetenv("NOT_CRAN")
                  remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/main.zip")
                  remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")'
          env: 
            GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}