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files.php
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<?php
include_once 'data.php';
if (isset($_SESSION['auth'])) {
include_once 'functions.php';
if (isset($_POST['filename']))
$_GET['filename'] = $_POST['filename'];
if (isset($_POST['file']))
$_GET['file'] = $_POST['file'];
########## read reference data ##########
database_connect(IL_DATABASE_PATH, 'library');
$file_query = $dbHandle->quote($_GET['file']);
$record = $dbHandle->query("SELECT id,file FROM library WHERE id=$file_query LIMIT 1");
$paper = $record->fetch(PDO::FETCH_ASSOC);
$record = null;
$dbHandle = null;
database_connect(IL_DATABASE_PATH, 'fulltext');
$file_query = $dbHandle->quote($_GET['file']);
$record = $dbHandle->query("SELECT full_text FROM full_text WHERE fileID=$file_query");
$fulltext = $record->fetchColumn();
$record = null;
$dbHandle = null;
?>
<div id="preview"></div>
<table cellspacing="0" style="width:100%;height:100%;margin-top:0px">
<tr>
<td class="alternating_row" style="padding: 5px">
<form id="uploadfiles" enctype="multipart/form-data" action="ajaxsupplement.php" method="POST">
<input type="hidden" name="file" value="<?php print htmlspecialchars($paper['id']) ?>">
<input type="hidden" name="filename" value="<?php print htmlspecialchars($paper['file']) ?>">
<button id="submituploadfiles"><i class="fa fa-save"></i> Save</button>
<br>
<strong>Add or replace PDF:</strong><br>
Local file:<br>
<input type="file" name="form_new_file"><br>
PDF from the Web:<br>
<input type="text" name="form_new_file_link" style="width: 99%"><br>
<br>
<b>Add graphical abstract:</b><br>
<input type="file" name="form_graphical_abstract" accept="image/*"><br>
<br>
<b>Add supplementary files:</b><br>
<input type="file" name="form_supplementary_file[]" multiple><br>
</form>
</td>
<td style="width:90%;padding: 2px 6px">
<div style="border-bottom:1px solid #cfcecc;font-weight:bold">PDF file:</div>
<?php if (file_exists(IL_PDF_PATH . DIRECTORY_SEPARATOR . get_subfolder($paper['file']) . DIRECTORY_SEPARATOR . $paper['file'])) { ?>
<table border=0 cellspacing=0 cellpadding=0 style="width:100%;margin:0px">
<tr class="file-highlight" data-fileid="<?php print $_GET['file'] ?>">
<td style="height:22px;line-height:22px">
<i class="fa fa-file-pdf-o" style="width:1.5em"></i>
<?php
echo '<a href="' . htmlspecialchars('pdfcontroller.php?downloadpdf=1&mode=download&file=' . $paper['file']) . '">' . $paper['file'] . '</a>';
echo '<a href="' . htmlspecialchars('pdfcontroller.php?downloadpdf=1&file=' . $paper['file']) . '" target="_blank">'
. '<i class="fa fa-external-link" style="color:inherit;margin-left:0.5em"></i></a>';
?>
</td>
<?php
if (!empty($fulltext)) {
?>
<td style="width:8em">
<div class="ui-state-default" style="float:right;padding:1px 4px">
<a href="viewindex.php?file=<?php print $_GET['file'] ?>" target="_blank" style="display:block;color:#000000">
<i class="fa fa-file-text-o"></i> See Text
</a>
</div>
</td>
<td style="width:6.5em">
<div class="ui-state-default reindex" id="reindex-<?php print $_GET['file'] ?>" style="float:right;padding:1px 4px">
<i class="fa fa-refresh"></i> Reindex
</div>
</td>
<?php
} else {
?>
<td style="width:25em;text-align:right">
No extractable text.
<div class="ui-state-default ocr" style="float:right;padding:1px 4px;margin-left:0.5em">
<i class="fa fa-file-text-o"></i> Try OCR
</div>
<div class="ui-state-default reindex" id="reindex-<?php print $_GET['file'] ?>" style="float:right;padding:1px 4px;margin-left:0.5em">
<i class="fa fa-refresh"></i> Reindex
</div>
</td>
<?php
}
?>
</tr>
</table>
<?php } ?>
<form id="filesform" enctype="multipart/form-data" action="ajaxsupplement.php" method="POST">
<input type="hidden" name="file" value="<?php print htmlspecialchars($paper['id']) ?>">
<div id="filelist">
<div style="width:100%;margin-top:1em;border-bottom:1px solid #cfcecc;font-weight:bold">Graphical Abstract:</div>
<?php
$integer = sprintf("%05d", intval($paper['file']));
$gr_abs = glob(IL_SUPPLEMENT_PATH . DIRECTORY_SEPARATOR . get_subfolder($integer) . DIRECTORY_SEPARATOR . $integer . "graphical_abstract.*");
if (!empty($gr_abs[0])) {
$url_filename = htmlspecialchars(substr(basename($gr_abs[0]), 5));
print '<table style="width:100%">
<tr class="file-highlight" id="file' . htmlspecialchars(basename($gr_abs[0])) . '">
<td style="height:22px;line-height:22px">
<i class="fa fa-image" style="width:1.5em;cursor: pointer"></i>
<a href="' . htmlspecialchars('attachment.php?attachment=' . basename($gr_abs[0])) . '">' . $url_filename . '</a>
<a href="' . htmlspecialchars('attachment.php?mode=inline&attachment=' . basename($gr_abs[0])) . '" target="_blank">
<i class="fa fa-external-link" style="color:inherit;margin-left:0.5em"></i></a>
</td>
<td style="height:22px;line-height:22px">
<div class="ui-state-default file-remove" style="float:right;padding:1px 4px"><i class="fa fa-trash-o"></i> Remove</div>
</td>
</tr>
</table>';
}
?>
<div style="width:100%;margin-top:1em;border-bottom:1px solid #cfcecc;font-weight:bold">Supplementary files:</div>
<table cellspacing=0 style="width:100%">
<tr><td></td><td></td><td></td></tr>
<?php
$files_to_display = glob(IL_SUPPLEMENT_PATH . DIRECTORY_SEPARATOR . get_subfolder($integer) . DIRECTORY_SEPARATOR . $integer . '*');
if (is_array($files_to_display)) {
foreach ($files_to_display as $supplementary_file) {
$url_filename = substr(basename($supplementary_file), 5);
if (strstr($url_filename, 'graphical_abstract') === false) {
//TODO: REWRITE USING FILEINFO FUNCTION
$extension = pathinfo($supplementary_file, PATHINFO_EXTENSION);
$isimage = null;
if ($extension == 'jpg' || $extension == 'jpeg' || $extension == 'gif' || $extension == 'png') {
$image_array = array();
$image_array = @getimagesize($supplementary_file);
$image_mime = $image_array['mime'];
if ($image_mime == 'image/jpeg' || $image_mime == 'image/gif' || $image_mime == 'image/png')
$isimage = true;
}
$isaudio = null;
if ($extension == 'ogg' || $extension == 'oga' || $extension == 'wav' || $extension == 'mp3' || $extension == 'm4a' || $extension == 'fla' || $extension == 'webma')
$isaudio = true;
$isvideo = null;
if ($extension == 'ogv' || $extension == 'webmv' || $extension == 'm4v' || $extension == 'flv')
$isvideo = true;
print '<tr class="file-highlight" id="file' . htmlspecialchars(basename($supplementary_file)) . '">' . PHP_EOL;
print '<td style="height:22px;line-height:22px;padding:1px 0">' . PHP_EOL;
if ($isimage) {
print '<i class="fa fa-image" style="cursor:pointer;width:1.5em"></i> ';
} elseif ($isaudio) {
print '<i class="fa fa-music audio" style="cursor:pointer;width:1.5em" title="Click to play"></i> ';
} elseif ($isvideo) {
print '<i class="fa fa-film video" style="cursor:pointer;width:1.5em" title="Click to play"></i> ';
} elseif ($extension == 'pdf') {
print '<i class="fa fa-file-pdf-o" style="width:1.5em"></i> ';
} else {
print '<i class="fa fa-file-o" style="width:1.5em"></i> ';
}
print '<a href="' . htmlspecialchars('attachment.php?attachment=' . basename($supplementary_file)) . '">';
print htmlspecialchars($url_filename) . '</a>';
if ($isimage || $isaudio || $isvideo || $extension == 'pdf') {
print '<a href="' . htmlspecialchars('attachment.php?mode=inline&attachment=' . basename($supplementary_file)) . '" target="_blank">';
print '<i class="fa fa-external-link" style="color:inherit;margin-left:0.5em"></i></a>' . PHP_EOL;
}
print '<input class="rename_container" type="text" size="35" name="rename[' . htmlspecialchars(basename($supplementary_file)) . ']" value="' . htmlspecialchars($url_filename) . '" style="display:none;margin-top:1px;width:90%">' . PHP_EOL;
print '</td>' . PHP_EOL;
print '<td style="width:6.5em;height:22px">' . PHP_EOL;
print '<div class="ui-state-default file-rename" style="float:right;padding:1px 4px"><i class="fa fa-pencil"></i> Rename</div>' . PHP_EOL;
print '</td>' . PHP_EOL;
print '<td style="width:6.5em;height:22px">' . PHP_EOL;
print '<div class="ui-state-default file-remove" style="float:right;padding:1px 4px"><i class="fa fa-trash-o"></i> Remove</div>' . PHP_EOL;
print '</td></tr>' . PHP_EOL;
print '<tr><td colspan=3 style="text-align:center">' . PHP_EOL;
if ($isvideo)
print '<div class="videocontainer" style="text-align:center;display:none"></div>';
if ($isaudio)
print '<div class="audiocontainer" style="text-align:center;display:none"></div>';
print '</td></tr>' . PHP_EOL;
}
}
}
?>
</table>
</div>
</form>
</td>
</tr>
</table>
<?php
} else {
print 'Super User or User permissions required.';
}
?>