From 5e5bb934f178cc8fc10cafa11d81a167ed946277 Mon Sep 17 00:00:00 2001
From: amstokely <amstokely@ucsd.edu>
Date: Mon, 27 Nov 2023 09:44:43 -0700
Subject: [PATCH] feat: enabled self-hosted CI.

---
 .github/workflows/netsci_CI.yml | 34 ++++++++++++++++-----------------
 netsci.yml                      | 11 +++++++++++
 2 files changed, 28 insertions(+), 17 deletions(-)
 create mode 100644 netsci.yml

diff --git a/.github/workflows/netsci_CI.yml b/.github/workflows/netsci_CI.yml
index 6c5e45c..58a6899 100644
--- a/.github/workflows/netsci_CI.yml
+++ b/.github/workflows/netsci_CI.yml
@@ -1,34 +1,34 @@
 name: netcalc
-on: [push, workflow_dispatch]
+on: [ push, workflow_dispatch ]
 jobs:
   run:
-    runs-on: [self-hosted]
+    runs-on: [ self-hosted ]
     env:
       repo_token: ${{ secrets.GITHUB_TOKEN }}
     steps:
-      - uses: actions/checkout@v2
-      - name: Setup anaconda
-        uses: conda-incubator/setup-miniconda@v2
+      - uses: mamba-org/setup-micromamba@v1
         with:
-          miniconda-version: "latest"
-          channels: bioconda, conda-forge, defaults
-          use-only-tar-bz2: true  # IMPORTANT: This needs to be set for caching to work properly!
-          auto-update-conda: true
-          auto-activate-base: true
+          micromamba-version: '1.3.1-0'
+          environment-file: netsci.yml
+          init-shell: >-
+            bash
+            powershell
+          cache-environment: true
+          post-cleanup: 'all'
       - name: Install netcalc dependencies
         run: |
-            conda install -c conda-forge swig boost numpy cmake pytest
+          conda install -c conda-forge swig boost numpy cmake pytest
       - name: build
         run: |
-            mkdir build
-            cd build
-            cmake .. -DCONDA_DIR=$CONDA_PREFIX -DCUDA_ARCHITECTURE=52
-            cmake --build . -j
-            make python
+          mkdir build
+          cd build
+          cmake .. -DCONDA_DIR=$CONDA_PREFIX -DCUDA_ARCHITECTURE=52
+          cmake --build . -j
+          make python
       - name: ctest
         run: |
           cd build
           ctest
       - name: pytest
         run: |
-            pytest
+          pytest
diff --git a/netsci.yml b/netsci.yml
new file mode 100644
index 0000000..7672c72
--- /dev/null
+++ b/netsci.yml
@@ -0,0 +1,11 @@
+name: netsci
+channels:
+  - conda-forge anaconda
+dependencies:
+  - python=3.10
+  - anaconda::cmake
+  - conda-forge::numpy
+  - conda-forge::doxygen
+  - conda-forge::boost
+  - conda-forge::swig
+  - conda-forge::pytest
\ No newline at end of file