From f7fd1c3c01d413202f3e916f1269dc8dfe6ad957 Mon Sep 17 00:00:00 2001
From: amstokely <amstokely@ucsd.edu>
Date: Mon, 27 Nov 2023 09:59:56 -0700
Subject: [PATCH] feat: enabled self-hosted CI.

---
 .github/workflows/netsci_CI.yml | 35 ++++++++++++++++-----------------
 1 file changed, 17 insertions(+), 18 deletions(-)

diff --git a/.github/workflows/netsci_CI.yml b/.github/workflows/netsci_CI.yml
index 860a964..9f140bc 100644
--- a/.github/workflows/netsci_CI.yml
+++ b/.github/workflows/netsci_CI.yml
@@ -1,33 +1,32 @@
 name: netcalc
-on: [ push, workflow_dispatch ]
+on: [push]
 jobs:
   run:
-    runs-on: [ self-hosted ]
+    runs-on: [self-hosted]
+    container: dvcorg/cml-py3:latest
     env:
       repo_token: ${{ secrets.GITHUB_TOKEN }}
     steps:
       - uses: actions/checkout@v2
-      - name: Update linux env
-        run: apt-get update
-      - uses: mamba-org/setup-micromamba@v1
+      - name: Setup anaconda
+        uses: conda-incubator/setup-miniconda@v2
         with:
-          micromamba-version: '1.3.1-0'
-          environment-file: netsci.yml
-          init-shell: >-
-            bash
-            powershell
-          cache-environment: true
-          post-cleanup: 'all'
+          miniconda-version: "latest"
+          channels: bioconda, conda-forge, defaults
+          use-only-tar-bz2: true  # IMPORTANT: This needs to be set for caching to work properly!
+          auto-update-conda: true
+          auto-activate-base: true
       - name: Install netcalc dependencies
         run: |
-          conda install -c conda-forge swig boost numpy cmake pytest
+          conda env create -f netsci.yml
+            conda activate netsci
       - name: build
         run: |
-          mkdir build
-          cd build
-          cmake .. -DCONDA_DIR=$CONDA_PREFIX -DCUDA_ARCHITECTURE=52
-          cmake --build . -j
-          make python
+            mkdir build
+            cd build
+            cmake .. -DCONDA_DIR=$CONDA_PREFIX -DCUDA_ARCHITECTURE=52
+            cmake --build . -j
+            make python
       - name: ctest
         run: |
           cd build