From 426296588371209e879038a54dcc4db3f4c559fc Mon Sep 17 00:00:00 2001
From: Adam Talbot <12817534+adamrtalbot@users.noreply.github.com>
Date: Thu, 2 May 2024 12:31:45 +0100
Subject: [PATCH] Add tests for S3, AZ and GS storage

---
 .../validation/ValidateParametersTest.groovy  | 69 +++++++++++++++++++
 1 file changed, 69 insertions(+)

diff --git a/plugins/nf-schema/src/test/nextflow/validation/ValidateParametersTest.groovy b/plugins/nf-schema/src/test/nextflow/validation/ValidateParametersTest.groovy
index 2a87fd82..b8885aec 100644
--- a/plugins/nf-schema/src/test/nextflow/validation/ValidateParametersTest.groovy
+++ b/plugins/nf-schema/src/test/nextflow/validation/ValidateParametersTest.groovy
@@ -674,6 +674,75 @@ class ValidateParametersTest extends Dsl2Spec{
         !stdout
     }
 
+    def 'ignore validation of aws s3' () {
+        given:
+        def schema = Path.of('src/testResources/nextflow_schema_file_path_pattern.json').toAbsolutePath().toString()
+        def SCRIPT = """
+            params.glob = 's3://src/testResources/correct.csv'
+            include { validateParameters } from 'plugin/nf-schema'
+            
+            validateParameters(parameters_schema: '$schema')
+        """
+
+        when:
+        def config = [:]
+        def result = new MockScriptRunner(config).setScript(SCRIPT).execute()
+        def stdout = capture
+                .toString()
+                .readLines()
+                .findResults {it.contains('WARN nextflow.validation.SchemaValidator') || it.startsWith('* --') ? it : null }
+
+        then:
+        noExceptionThrown()
+        !stdout
+    }
+
+    def 'ignore validation of azure blob storage' () {
+        given:
+        def schema = Path.of('src/testResources/nextflow_schema_file_path_pattern.json').toAbsolutePath().toString()
+        def SCRIPT = """
+            params.glob = 'az://src/testResources/correct.csv'
+            include { validateParameters } from 'plugin/nf-schema'
+            
+            validateParameters(parameters_schema: '$schema')
+        """
+
+        when:
+        def config = [:]
+        def result = new MockScriptRunner(config).setScript(SCRIPT).execute()
+        def stdout = capture
+                .toString()
+                .readLines()
+                .findResults {it.contains('WARN nextflow.validation.SchemaValidator') || it.startsWith('* --') ? it : null }
+
+        then:
+        noExceptionThrown()
+        !stdout
+    }
+
+    def 'ignore validation of gcp cloud storage' () {
+        given:
+        def schema = Path.of('src/testResources/nextflow_schema_file_path_pattern.json').toAbsolutePath().toString()
+        def SCRIPT = """
+            params.glob = 'gs://src/testResources/correct.csv'
+            include { validateParameters } from 'plugin/nf-schema'
+            
+            validateParameters(parameters_schema: '$schema')
+        """
+
+        when:
+        def config = [:]
+        def result = new MockScriptRunner(config).setScript(SCRIPT).execute()
+        def stdout = capture
+                .toString()
+                .readLines()
+                .findResults {it.contains('WARN nextflow.validation.SchemaValidator') || it.startsWith('* --') ? it : null }
+
+        then:
+        noExceptionThrown()
+        !stdout
+    }
+
     def 'correct validation of numbers with lenient mode' () {
         given:
         def schema = Path.of('src/testResources/nextflow_schema.json').toAbsolutePath().toString()