Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add additional metrics to MultiQC #46

Open
nh13 opened this issue May 23, 2024 · 1 comment
Open

Add additional metrics to MultiQC #46

nh13 opened this issue May 23, 2024 · 1 comment
Labels
enhancement New feature or request

Comments

@nh13
Copy link
Member

nh13 commented May 23, 2024

Description of feature

See: #42 (comment)

E.g. add metrics produced by GroupReadsByUmi: See: https://github.com/MultiQC/MultiQC/blob/main/docs/modules/fgbio.md

Are there additional QC that we should add? It would be useful to have a table where each row is a sample, and each column is the # of reads after a given step. E.g. raw reads (mapped and grouped), consensus calls (total and mapped), filtered calls (total and mapped).

@nh13 nh13 added the enhancement New feature or request label May 23, 2024
@nh13 nh13 mentioned this issue May 23, 2024
10 tasks
@SPPearce
Copy link
Contributor

Oh yes, a summary of where the reads are "lost" would be really useful.
Potentially also an on-target proportion as generally it is going to be used with a pulldown.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
None yet
Development

No branches or pull requests

2 participants