diff --git a/CHANGELOG.md b/CHANGELOG.md index bda4796a41..1d8c61f939 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -111,7 +111,7 @@ Loametjåhkkå is another one of the main peaks of the Pårte massif. ### Added - [#1502](https://github.com/nf-core/sarek/pull/1502) - export CNVs into VCF format in `bam_variant_calling_cnvkit` -- [#1534](https://github.com/nf-core/sarek/pull/1534), [#1573](https://github.com/nf-core/sarek/pull/1573) - Handling `.fastq.gz.spring` files as input +- [#1534](https://github.com/nf-core/sarek/pull/1534), [#1573](https://github.com/nf-core/sarek/pull/1573), [#1734](https://github.com/nf-core/sarek/pull/1534) - Handling `.fastq.gz.spring` files as input - [#1593](https://github.com/nf-core/sarek/pull/1593) - Prepare release `3.4.2` ### Changed diff --git a/docs/images/sarek_subway.png b/docs/images/sarek_subway.png index f70415fbfe..f2f20ffc01 100644 Binary files a/docs/images/sarek_subway.png and b/docs/images/sarek_subway.png differ diff --git a/docs/images/sarek_subway.svg b/docs/images/sarek_subway.svg index d5129c4b36..62544b70fc 100644 --- a/docs/images/sarek_subway.svg +++ b/docs/images/sarek_subway.svg @@ -2,12 +2,12 @@ pre-processingcramspringfastqfastq/spring/ubamfastqfastq/spring/ubamGermline + y="846.21222" + id="tspan15">Germline deepvariant, deepvariant, freebayes + id="tspan18">freebayes GATK GATK haplotypecaller, + id="tspan21">haplotypecaller, mpileup, strelka2, + id="tspan23"> mpileup, strelka2, Sentieon haplotyper + id="tspan25"> Sentieon haplotyper • manta, tiddit + id="tspan27">• manta, tiddit • cnvkit• cnvkit