diff --git a/.github/workflows/cd.yml b/.github/workflows/cd.yml
new file mode 100644
index 0000000..0fe602d
--- /dev/null
+++ b/.github/workflows/cd.yml
@@ -0,0 +1,27 @@
+name: Continuous Deployment
+
+on:
+  push:
+    branches:
+      - main
+      - master
+
+jobs:
+  deployment:
+    runs-on: ubuntu-latest
+    steps:
+      -
+        name: Create release
+        id: release-please
+        uses: google-github-actions/release-please-action@v3
+        with:
+          release-type: python
+          package-name: amakihi
+      -
+        name: Publish to PyPI
+        if: ${{ steps.release-please.outputs.release_created }}
+        env:
+          PYPI_TOKEN: ${{ secrets.PYPI_TOKEN }}
+        run: |
+          poetry config pypi-token.pypi $PYPI_TOKEN
+          poetry publish --build --verbose
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..50351fa
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,63 @@
+name: Continuous Integration
+
+on:
+  push:
+    paths-ignore:
+      - 'docs/**'
+  pull_request:
+    paths-ignore:
+      - 'docs/**'
+
+jobs:
+  pre-commit:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ['3.8']
+    steps:
+    -
+      name: Setup code repository
+      uses: actions/checkout@v2
+    -
+      name: Install Pre-Commit
+      run: |
+        pipx install pre-commit
+    -
+      name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+    -
+      name: Execute pre-commit
+      run: |
+        pre-commit run --all-files
+
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        python-version: ['3.8']
+    steps:
+    -
+      name: Setup code repository
+      uses: actions/checkout@v2
+    -
+      name: Install poetry & docker-compose
+      run: |
+        pipx install poetry
+    -
+      name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v4
+      with:
+        python-version: ${{ matrix.python-version }}
+        cache: 'poetry'
+    -
+      name: Install Amakihi
+      run: |
+        poetry install
+    -
+      name: Execute Tests
+      run: |
+        poetry run pytest --cov . --cov-report=lcov -s -v
diff --git a/.gitignore b/.gitignore
index 196452d..b56bbaa 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,22 +1,111 @@
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
+*$py.class
 
-# Sphinx documentation
-#docs/_build/
+# C extensions
+*.so
 
-# setup
-amakihi.egg-info/
-dist/
+# Distribution / packaging
+.Python
 build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/generated/*.rst
+docs/source/generated/*.rst
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
 
-# Particular to amakihi
-CADC_LOGIN.md
-loop_imdiff*
+# mypy
+.mypy_cache/
 
-# token for working on repo
-TOKEN
+# VS Code
+.vscode/
 
-# cookiecutter stuff, will be fixed later
-Makefile
-requirements_dev.txt
+# MacOS
+.DS_Store
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
new file mode 100644
index 0000000..8718532
--- /dev/null
+++ b/.pre-commit-config.yaml
@@ -0,0 +1,96 @@
+repos:
+- hooks:
+  - args:
+    - --multi-line=3
+    - --trailing-comma
+    - --force-grid-wrap=0
+    - --use-parentheses
+    - --line-width=88
+    id: isort
+  repo: https://github.com/pycqa/isort
+  rev: 5.12.0
+- hooks:
+  - args:
+    - --max-line-length=89
+    - --max-complexity=15
+    id: flake8
+  repo: https://github.com/pycqa/flake8
+  rev: 6.0.0
+- hooks:
+  - args:
+    - --py36-plus
+    id: pyupgrade
+  repo: https://github.com/asottile/pyupgrade
+  rev: v3.9.0
+- hooks:
+  - id: black
+  repo: https://github.com/psf/black
+  rev: 23.7.0
+- hooks:
+  - additional_dependencies:
+    - types-attrs
+    - types-requests
+    - types-setuptools
+    - types-PyYAML
+    args:
+    - --ignore-missing-imports
+    - --no-implicit-optional
+    id: mypy
+  repo: https://github.com/pre-commit/mirrors-mypy
+  rev: v1.4.1
+- hooks:
+  - args:
+    - --convention=numpy
+    - --add-ignore=D104
+    id: pydocstyle
+  repo: https://github.com/pycqa/pydocstyle
+  rev: 6.3.0
+- hooks:
+  - id: blacken-docs
+  repo: https://github.com/asottile/blacken-docs
+  rev: 1.15.0
+- hooks:
+  - exclude: ^docs/*
+    id: trailing-whitespace
+  - exclude: ^docs/*
+    id: end-of-file-fixer
+  - id: debug-statements
+  - id: check-case-conflict
+  - id: check-json
+  - args:
+    - --unsafe
+    id: check-yaml
+  - id: mixed-line-ending
+  - id: check-toml
+  - id: pretty-format-json
+  - id: check-docstring-first
+  - id: check-symlinks
+  - id: detect-private-key
+  repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.4.0
+- hooks:
+  - args:
+    - -iii
+    - -lll
+    id: bandit
+  repo: https://github.com/PyCQA/bandit
+  rev: 1.7.5
+- hooks:
+  - additional_dependencies:
+    - radon
+    args:
+    - cc
+    - --min=C
+    - --total-average
+    entry: radon
+    id: radon
+    language: python
+    name: radon
+    verbose: true
+  repo: local
+- hooks:
+  - id: commitizen
+    stages:
+    - commit-msg
+  repo: https://github.com/commitizen-tools/commitizen
+  rev: 3.5.3
diff --git a/AUTHORS.md b/AUTHORS.md
new file mode 100644
index 0000000..efcb7e5
--- /dev/null
+++ b/AUTHORS.md
@@ -0,0 +1,9 @@
+# Credits
+
+## Development Lead
+
+-   Nicholas Vieira \<<nicholas.vieira@mail.mcgill.ca>\>
+
+## Contributors
+
+None yet. Why not be the first?
diff --git a/AUTHORS.rst b/AUTHORS.rst
deleted file mode 100644
index 6ad1f1c..0000000
--- a/AUTHORS.rst
+++ /dev/null
@@ -1,13 +0,0 @@
-=======
-Credits
-=======
-
-Development Lead
-----------------
-
-* Nicholas Vieira <nicholas.vieira@mail.mcgill.ca>
-
-Contributors
-------------
-
-None yet. Why not be the first?
diff --git a/CHANGELOG.md b/CHANGELOG.md
new file mode 100644
index 0000000..e69de29
diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md
new file mode 100644
index 0000000..fd46bb6
--- /dev/null
+++ b/CONTRIBUTING.md
@@ -0,0 +1,158 @@
+# Contributing
+
+Contributions are welcome, and they are greatly appreciated! Every
+little bit helps, and credit will always be given.
+
+You can contribute in many ways:
+
+## Types of Contributions
+
+### Report Bugs
+
+Report bugs at <https://github.com/nvieira-mcgill/amakihi/issues>.
+
+If you are reporting a bug, please include:
+
+- Your operating system name and version.
+- Any details about your local setup that might be helpful in troubleshooting.
+- Detailed steps to reproduce the bug.
+
+### Fix Bugs
+
+Look through the GitHub issues for bugs. Anything tagged with \"bug\"
+and \"help wanted\" is open to whoever wants to implement it.
+
+### Implement Features
+
+Look through the GitHub issues for features. Anything tagged with
+\"enhancement\" and \"help wanted\" is open to whoever wants to
+implement it.
+
+### Write Documentation
+
+amakihi could always use more documentation, whether as part of the
+official amakihi docs, in docstrings, or even on the web in blog posts,
+articles, and such.
+
+### Submit Feedback
+
+The best way to send feedback is to file an issue at
+<https://github.com/nvieira-mcgill/amakihi/issues>.
+
+If you are proposing a feature:
+
+- Explain in detail how it would work.
+- Keep the scope as narrow as possible, to make it easier to implement.
+- Remember that this is a volunteer-driven project, and that contributions are welcome :)
+
+## Getting Started
+
+Ready to contribute? Here\'s how to set up [amakihi](https://github.com/nvieira-mcgill/amakihi) for
+local development.
+
+1. Fork the [amakihi](https://github.com/nvieira-mcgill/amakihi) repo on GitHub.
+
+2. Clone your fork locally:
+
+    ```shell
+    git clone git@github.com:your_name_here/amakihi.git
+    ```
+
+3. Amakihi uses Poetry[https://python-poetry.org] for dependency management. To install Poetry, follow the instructions [here](https://python-poetry.org/docs/#installation).
+
+    Once Poetry is installed, install the dependencies for amakihi:
+
+    ``` shell
+    cd /where/you/cloned/amakihi
+    poetry install
+    ```
+
+    This will install all dependencies, including development dependencies in a virtualenv.
+
+    To activate the virtualenv, run:
+
+    ```shell
+    poetry shell
+    ```
+
+    To add a new dependency, run:
+
+    ```shell
+    poetry add <package-name>
+    ```
+
+    To add a new development dependency, run:
+
+    ```shell
+    poetry add --group=dev <package-name>
+    ```
+
+    To remove a dependency, run:
+
+    ```shell
+    poetry remove <package-name>
+    ```
+
+4. Create a branch for local development and make your changes locally:
+
+   ``` shell
+   git checkout -b name-of-your-bugfix-or-feature
+   ```
+
+5. When you\'re done making changes, check that your changes pass pre-commit checks. As the name suggests, these checks are run before you commit your changes. To run these checks, run:
+
+    ``` shell
+    pre-commit run --all-files
+    ```
+
+    Alternatively, to run these checks automatically before every commit, run:
+
+    ``` shell
+    pre-commit install
+    ```
+
+    This will install a git hook that will run the pre-commit checks before every commit. If the checks fail, the commit will be aborted.
+
+6. To commit your changes and push your branch to GitHub:
+
+   For standardized commit messages, amakihi uses [commitizen](https://github.com/commitizen/cz-cli). To use commitizen, run:
+
+    ``` shell
+    git add .
+    $ cz commit
+    ```
+
+    This will prompt you to fill out any necessary fields for your commit message.
+
+    **Note:** We use standardized commit messages to generate the changelog and automatically bump the version number when a new release is made.
+
+    ``` shell
+    git push origin name-of-your-bugfix-or-feature
+    ```
+
+7. Submit a pull request through the GitHub website.
+
+## Pull Request Guidelines
+
+Before you submit a pull request, check that it meets these guidelines:
+
+1. The pull request should include tests.
+2. If the pull request adds functionality, the docs should be updated.Put your new functionality into a function with a docstring.
+3. The pull request should work for Python >=3.8
+
+## Tips
+
+To run tests, you can use the following command:
+
+```shell
+poetry shell
+pytest
+```
+
+This will run all tests in the tests directory and subdirectories.
+
+To run a subset of tests:
+
+``` shell
+python pytests tests/test_amakihi.py
+```
diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst
deleted file mode 100644
index c9e40aa..0000000
--- a/CONTRIBUTING.rst
+++ /dev/null
@@ -1,128 +0,0 @@
-.. highlight:: shell
-
-============
-Contributing
-============
-
-Contributions are welcome, and they are greatly appreciated! Every little bit
-helps, and credit will always be given.
-
-You can contribute in many ways:
-
-Types of Contributions
-----------------------
-
-Report Bugs
-~~~~~~~~~~~
-
-Report bugs at https://github.com/nvieira-mcgill/amakihi/issues.
-
-If you are reporting a bug, please include:
-
-* Your operating system name and version.
-* Any details about your local setup that might be helpful in troubleshooting.
-* Detailed steps to reproduce the bug.
-
-Fix Bugs
-~~~~~~~~
-
-Look through the GitHub issues for bugs. Anything tagged with "bug" and "help
-wanted" is open to whoever wants to implement it.
-
-Implement Features
-~~~~~~~~~~~~~~~~~~
-
-Look through the GitHub issues for features. Anything tagged with "enhancement"
-and "help wanted" is open to whoever wants to implement it.
-
-Write Documentation
-~~~~~~~~~~~~~~~~~~~
-
-amakihi could always use more documentation, whether as part of the
-official amakihi docs, in docstrings, or even on the web in blog posts,
-articles, and such.
-
-Submit Feedback
-~~~~~~~~~~~~~~~
-
-The best way to send feedback is to file an issue at https://github.com/nvieira-mcgill/amakihi/issues.
-
-If you are proposing a feature:
-
-* Explain in detail how it would work.
-* Keep the scope as narrow as possible, to make it easier to implement.
-* Remember that this is a volunteer-driven project, and that contributions
-  are welcome :)
-
-Get Started!
-------------
-
-Ready to contribute? Here's how to set up `amakihi` for local development.
-
-1. Fork the `amakihi` repo on GitHub.
-2. Clone your fork locally::
-
-    $ git clone git@github.com:your_name_here/amakihi.git
-
-3. Install your local copy into a virtualenv. Assuming you have virtualenvwrapper installed, this is how you set up your fork for local development::
-
-    $ mkvirtualenv amakihi
-    $ cd amakihi/
-    $ python setup.py develop
-
-4. Create a branch for local development::
-
-    $ git checkout -b name-of-your-bugfix-or-feature
-
-   Now you can make your changes locally.
-
-5. When you're done making changes, check that your changes pass flake8 and the
-   tests, including testing other Python versions with tox::
-
-    $ flake8 amakihi tests
-    $ python setup.py test or pytest
-    $ tox
-
-   To get flake8 and tox, just pip install them into your virtualenv.
-
-6. Commit your changes and push your branch to GitHub::
-
-    $ git add .
-    $ git commit -m "Your detailed description of your changes."
-    $ git push origin name-of-your-bugfix-or-feature
-
-7. Submit a pull request through the GitHub website.
-
-Pull Request Guidelines
------------------------
-
-Before you submit a pull request, check that it meets these guidelines:
-
-1. The pull request should include tests.
-2. If the pull request adds functionality, the docs should be updated. Put
-   your new functionality into a function with a docstring, and add the
-   feature to the list in README.rst.
-3. The pull request should work for Python 3.5, 3.6, 3.7 and 3.8, and for PyPy. Check
-   https://travis-ci.com/nvieira-mcgill/amakihi/pull_requests
-   and make sure that the tests pass for all supported Python versions.
-
-Tips
-----
-
-To run a subset of tests::
-
-
-    $ python -m unittest tests.test_amakihi
-
-Deploying
----------
-
-A reminder for the maintainers on how to deploy.
-Make sure all your changes are committed (including an entry in HISTORY.rst).
-Then run::
-
-$ bump2version patch # possible: major / minor / patch
-$ git push
-$ git push --tags
-
-Travis will then deploy to PyPI if tests pass.
diff --git a/HISTORY.rst b/HISTORY.rst
deleted file mode 100644
index a07db1f..0000000
--- a/HISTORY.rst
+++ /dev/null
@@ -1,8 +0,0 @@
-=======
-History
-=======
-
-0.1.0 (2023-02-14)
-------------------
-
-* First release on PyPI.
diff --git a/LICENSE b/LICENSE
index e125ad7..e296576 100644
--- a/LICENSE
+++ b/LICENSE
@@ -19,4 +19,3 @@ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
 SOFTWARE.
-
diff --git a/MANIFEST.in b/MANIFEST.in
deleted file mode 100644
index 965b2dd..0000000
--- a/MANIFEST.in
+++ /dev/null
@@ -1,11 +0,0 @@
-include AUTHORS.rst
-include CONTRIBUTING.rst
-include HISTORY.rst
-include LICENSE
-include README.rst
-
-recursive-include tests *
-recursive-exclude * __pycache__
-recursive-exclude * *.py[co]
-
-recursive-include docs *.rst conf.py Makefile make.bat *.jpg *.png *.gif
diff --git a/README.md b/README.md
new file mode 100644
index 0000000..096637e
--- /dev/null
+++ b/README.md
@@ -0,0 +1,101 @@
+# amakihi
+
+[![image](https://img.shields.io/pypi/v/amakihi.svg)](https://pypi.python.org/pypi/amakihi)
+
+[![image](https://img.shields.io/travis/nvieira-mcgill/amakihi.svg)](https://travis-ci.com/nvieira-mcgill/amakihi)
+
+[![Documentation Status](https://readthedocs.org/projects/amakihi/badge/?version=latest)](https://amakihi.readthedocs.io/en/latest/?version=latest)
+
+End-to-end image differencing and transient detection software,
+including:
+
+-   Downloading reference images (a.k.a. templates) from various surveys
+-   Image background subtraction/estimation
+-   Image masking, including masking of saturated pixels
+-   Building effective Point-Spread Functions (ePSFs)
+-   Image alignment (a.k.a. image registration)
+-   Image differencing (a.k.a. image subtraction)
+-   Transient detection and basic vetting of candidate transients
+
+The end products of a pipeline constructed from `amakihi` are
+\"triplets\", i.e., [N]{.title-ref} length-3 arrays of the (science,
+reference, difference) images cropped around [N]{.title-ref} candidate
+transient sources. These candidate transients can then be further vetted
+with e.g. your favourite machine learning algorithm. (I use
+[braai](https://github.com/dmitryduev/braai)).
+
+Some modules for interfacing with `braai` are included here as well.
+
+This software was developed to serve in a pipeline for the MegaCam
+instrument of the Canada-France-Hawaii Telescope (CFHT). This pipeline
+was used for all image differencing and transient detection in the
+following paper describing our CFHT MegaCam follow-up of the
+gravitational wave event GW190814:
+
+[Vieira, N., Ruan, J.J, Haggard, D., Drout, M.R. et al. 2020, ApJ, 895,
+96, 2. \*A Deep CFHT Optical Search for a Counterpart to the Possible
+Neutron Star - Black Hole Merger
+GW190814.](https://ui.adsabs.harvard.edu/abs/2020arXiv200309437V/abstract)
+
+## Documentation
+
+Detailed documentation for all modules can be found
+[here](https://amakihi.readthedocs.io/en/latest/).. In the future,
+example scripts/notebooks will be added.
+
+## Installation
+
+Currently, needs to be installed directly from github. May be
+installable with `conda` and/or `pip` in the future.
+
+Dependencies must be installed manually for the time being. Dependencies
+are:
+
+**Essential dependencies:**
+
+-   numpy
+-   scipy
+-   matplotlib
+-   [astropy](https://docs.astropy.org/en/stable/)
+-   [photutils](https://photutils.readthedocs.io/en/stable/)
+-   [scikit-image](https://scikit-image.org/)
+-   [scikit-learn](https://scikit-learn.org/stable/install.html)
+-   [astroquery](https://astroquery.readthedocs.io/en/latest/) (for
+    [crossmatch]{.title-ref} module)
+-   [lmxl](https://lxml.de/) (for [query_CFIS]{.title-ref} module)
+
+**Semi-optional dependencies:**
+
+-   [tensorflow](https://www.tensorflow.org/install) (if using
+    [rb_model_utils.write_model()]{.title-ref},
+    [.load_model()]{.title-ref}, [.use_model()]{.title-ref}, or
+    [.vgg6()]{.title-ref})
+
+**Really optional dependencies:**
+
+-   [imblearn](https://imbalanced-learn.org/stable/index.html) (if using
+    [rb_dataset_utils.augment_dataset_SMOTE()]{.title-ref})
+
+**Non-Python:**
+
+-   [astrometry.net](http://astrometry.net/use.html) (can however be
+    ignored in favour of source detection with the image segmentation
+    methods of `photutils` instead)
+-   [hotpants](https://github.com/acbecker/hotpants)
+
+Once you have the dependencies, to install `amakihi`, simply run :
+
+    python setup.py install
+
+## Contact
+
+<nicholas.vieira@mail.mcgill.ca>
+
+## Credits
+
+Free software: MIT license
+
+This package was created in part with
+[Cookiecutter](https://github.com/audreyr/cookiecutter) and the
+[audreyr/cookiecutter-pypackage](https://github.com/audreyr/cookiecutter-pypackage)
+project template.
diff --git a/README.rst b/README.rst
deleted file mode 100644
index 3d9e419..0000000
--- a/README.rst
+++ /dev/null
@@ -1,114 +0,0 @@
-=======
-amakihi
-=======
-
-.. image:: https://img.shields.io/pypi/v/amakihi.svg
-        :target: https://pypi.python.org/pypi/amakihi
-
-.. image:: https://img.shields.io/travis/nvieira-mcgill/amakihi.svg
-        :target: https://travis-ci.com/nvieira-mcgill/amakihi
-
-.. image:: https://readthedocs.org/projects/amakihi/badge/?version=latest
-        :target: https://amakihi.readthedocs.io/en/latest/?version=latest
-        :alt: Documentation Status
-
-
-End-to-end image differencing and transient detection software, including:
-
-- Downloading reference images (a.k.a. templates) from various surveys
-- Image background subtraction/estimation
-- Image masking, including masking of saturated pixels
-- Building effective Point-Spread Functions (ePSFs)
-- Image alignment (a.k.a. image registration)
-- Image differencing (a.k.a. image subtraction)
-- Transient detection and basic vetting of candidate transients 
-
-The end products of a pipeline constructed from ``amakihi`` are "triplets", i.e., `N` length-3 arrays of the (science, reference, difference) images cropped around `N` candidate transient sources. These candidate transients can then be further vetted with e.g. your favourite machine learning algorithm. (I use braai_). 
-
-Some modules for interfacing with ``braai`` are included here as well. 
-
-This software was developed to serve in a pipeline for the MegaCam instrument of the Canada-France-Hawaii Telescope (CFHT). This pipeline was used for all image differencing and transient detection in the following paper describing our CFHT MegaCam follow-up of the gravitational wave event GW190814:
-
-`Vieira, N., Ruan, J.J, Haggard, D., Drout, M.R. et al. 2020, ApJ, 895, 96, 2. *A Deep CFHT Optical Search for a Counterpart to the Possible Neutron Star - Black Hole Merger GW190814.`_
-
-
-
-Documentation
-=============
-
-Detailed documentation for all modules can be found `here <https://amakihi.readthedocs.io/en/latest/>`_.. In the future, example scripts/notebooks will be added.
-
-
-
-Installation
-============
-
-Currently, needs to be installed directly from github. May be installable with ``conda`` and/or ``pip`` in the future.
-
-Dependencies must be installed manually for the time being. Dependencies are:
-
-**Essential dependencies:**
-
-- numpy
-- scipy
-- matplotlib
-- astropy_
-- photutils_
-- `scikit-image`_
-- `scikit-learn`_
-- astroquery_ (for `crossmatch` module)
-- lmxl_ (for `query_CFIS` module)
-
-**Semi-optional dependencies:**
-
-- tensorflow_ (if using `rb_model_utils.write_model()`, `.load_model()`, `.use_model()`, or `.vgg6()`)
-
-**Really optional dependencies:** 
-
-- imblearn_ (if using `rb_dataset_utils.augment_dataset_SMOTE()`)
-
-
-**Non-Python:**
-
-- `astrometry.net`_ (can however be ignored in favour of source detection with the image segmentation methods of ``photutils`` instead)
-- hotpants_
-
-
-Once you have the dependencies, to install ``amakihi``, simply run ::
-
-	python setup.py install
-
-
-
-Contact
-=======
-
-nicholas.vieira@mail.mcgill.ca
-
-
-
-Credits
-=======
-
-Free software: MIT license
-
-This package was created in part with Cookiecutter_ and the `audreyr/cookiecutter-pypackage`_ project template.
-
-
-.. _braai: https://github.com/dmitryduev/braai
-.. _astropy: https://docs.astropy.org/en/stable/
-.. _photutils: https://photutils.readthedocs.io/en/stable/
-.. _`scikit-image`: https://scikit-image.org/
-.. _`scikit-learn`: https://scikit-learn.org/stable/install.html
-.. _tensorflow: https://www.tensorflow.org/install
-.. _imblearn: https://imbalanced-learn.org/stable/index.html
-.. _lmxl: https://lxml.de/
-.. _astroquery: https://astroquery.readthedocs.io/en/latest/
-
-.. _`astrometry.net`: http://astrometry.net/use.html
-.. _hotpants: https://github.com/acbecker/hotpants
-
-.. _`Vieira, N., Ruan, J.J, Haggard, D., Drout, M.R. et al. 2020, ApJ, 895, 96, 2. *A Deep CFHT Optical Search for a Counterpart to the Possible Neutron Star - Black Hole Merger GW190814.`: https://ui.adsabs.harvard.edu/abs/2020arXiv200309437V/abstract
-
-.. _Cookiecutter: https://github.com/audreyr/cookiecutter
-.. _`audreyr/cookiecutter-pypackage`: https://github.com/audreyr/cookiecutter-pypackage
diff --git a/docs/conf.py b/docs/conf.py
index fe1ddcc..2e08fb5 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -1,26 +1,26 @@
 #!/usr/bin/env python
-#
-# amakihi documentation build configuration file, created by
-# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
-#
-# This file is execfile()d with the current directory set to its
-# containing dir.
-#
-# Note that not all possible configuration values are present in this
-# autogenerated file.
-#
-# All configuration values have a default; values that are commented out
-# serve to show the default.
 
-# If extensions (or modules to document with autodoc) are in another
-# directory, add these directories to sys.path here. If the directory is
-# relative to the documentation root, use os.path.abspath to make it
-# absolute, like shown here.
-#
-import os
-import sys
-sys.path.insert(0, os.path.abspath('..'))
-sys.path.append("../amakihi/")
+"""
+Sphinx configuration file for amakihi documentation.
+
+amakihi documentation build configuration file, created by
+sphinx-quickstart on Fri Jun  9 13:47:02 2017.
+
+This file is execfile()d with the current directory set to its
+containing dir.
+
+Note that not all possible configuration values are present in this
+autogenerated file.
+
+All configuration values have a default; values that are commented out
+serve to show the default.
+
+If extensions (or modules to document with autodoc) are in another
+directory, add these directories to sys.path here. If the directory is
+relative to the documentation root, use os.path.abspath to make it
+absolute, like shown here.
+"""
+from typing import Dict
 
 import amakihi
 
@@ -33,26 +33,26 @@
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
 extensions = [
-    'sphinx.ext.autodoc',
-    'sphinx.ext.napoleon', ## ADDED BY NICK
-    'sphinx-jsonschema' # ADDED BY NICK
+    "sphinx.ext.autodoc",
+    "sphinx.ext.napoleon",  # ADDED BY NICK
+    "sphinx-jsonschema",  # ADDED BY NICK
 ]
 
 
 # Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
+templates_path = ["_templates"]
 
 # The suffix(es) of source filenames.
 # You can specify multiple suffix as a list of string:
 #
 # source_suffix = ['.rst', '.md']
-source_suffix = '.rst'
+source_suffix = ".rst"
 
 # The master toctree document.
-master_doc = 'index'
+master_doc = "index"
 
 # General information about the project.
-project = 'amakihi'
+project = "amakihi"
 copyright = "2023, Nicholas Vieira"
 author = "Nicholas Vieira"
 
@@ -75,21 +75,21 @@
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
 
 # The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
+pygments_style = "sphinx"
 
 # If true, `todo` and `todoList` produce output, else they produce nothing.
 todo_include_todos = False
 
-## ADDED BY NICK
+# ADDED BY NICK
 # allows correct reading of x1, x2 : int, optional
-napoleon_use_param = False 
+napoleon_use_param = False
 
-## ADDED BY NICK
+# ADDED BY NICK
 # sort functions/classes/etc by source code rather than alphabetically
-autodoc_member_order = 'bysource' 
+autodoc_member_order = "bysource"
 
 
 # -- Options for HTML output -------------------------------------------
@@ -97,7 +97,7 @@
 # The theme to use for HTML and HTML Help pages.  See the documentation for
 # a list of builtin themes.
 #
-html_theme = 'sphinx_rtd_theme' ## ADDED BY NICK
+html_theme = "sphinx_rtd_theme"  # ADDED BY NICK
 
 # Theme options are theme-specific and customize the look and feel of a
 # theme further.  For a list of options available for each theme, see the
@@ -108,30 +108,27 @@
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
+html_static_path = ["_static"]
 
 
 # -- Options for HTMLHelp output ---------------------------------------
 
 # Output file base name for HTML help builder.
-htmlhelp_basename = 'amakihidoc'
+htmlhelp_basename = "amakihidoc"
 
 
 # -- Options for LaTeX output ------------------------------------------
 
-latex_elements = {
+latex_elements: Dict[str, str] = {
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',
-
     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',
-
     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',
-
     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
@@ -141,9 +138,7 @@
 # (source start file, target name, title, author, documentclass
 # [howto, manual, or own class]).
 latex_documents = [
-    (master_doc, 'amakihi.tex',
-     'amakihi Documentation',
-     'Nicholas Vieira', 'manual'),
+    (master_doc, "amakihi.tex", "amakihi Documentation", "Nicholas Vieira", "manual"),
 ]
 
 
@@ -151,11 +146,7 @@
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'amakihi',
-     'amakihi Documentation',
-     [author], 1)
-]
+man_pages = [(master_doc, "amakihi", "amakihi Documentation", [author], 1)]
 
 
 # -- Options for Texinfo output ----------------------------------------
@@ -164,13 +155,13 @@
 # (source start file, target name, title, author,
 #  dir menu entry, description, category)
 texinfo_documents = [
-    (master_doc, 'amakihi',
-     'amakihi Documentation',
-     author,
-     'amakihi',
-     'One line description of project.',
-     'Miscellaneous'),
+    (
+        master_doc,
+        "amakihi",
+        "amakihi Documentation",
+        author,
+        "amakihi",
+        "One line description of project.",
+        "Miscellaneous",
+    ),
 ]
-
-
-
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 0000000..ae23b2d
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,2086 @@
+# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand.
+
+[[package]]
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+version = "3.1.1"
+description = "Bash tab completion for argparse"
+optional = false
+python-versions = ">=3.6"
+files = [
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+    {file = "argcomplete-3.1.1.tar.gz", hash = "sha256:6c4c563f14f01440aaffa3eae13441c5db2357b5eec639abe7c0b15334627dff"},
+]
+
+[package.extras]
+test = ["coverage", "mypy", "pexpect", "ruff", "wheel"]
+
+[[package]]
+name = "astropy"
+version = "5.2.2"
+description = "Astronomy and astrophysics core library"
+optional = false
+python-versions = ">=3.8"
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+
+[[package]]
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+optional = false
+python-versions = ">=3.7"
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+zstd = ["zstandard (>=0.18.0)"]
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+[[package]]
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+description = "Virtual Python Environment builder"
+optional = false
+python-versions = ">=3.7"
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+[package.extras]
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+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezer (>=0.4.6)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.8)", "time-machine (>=2.9)"]
+
+[[package]]
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+description = "Measures the displayed width of unicode strings in a terminal"
+optional = false
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+[[package]]
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+version = "3.16.0"
+description = "Backport of pathlib-compatible object wrapper for zip files"
+optional = false
+python-versions = ">=3.8"
+files = [
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+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
+
+[metadata]
+lock-version = "2.0"
+python-versions = "^3.8"
+content-hash = "17cedc83793675e3a79add17ae8aff3fb070276826e71b00f49712f30bda93c0"
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..b722a9c
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,42 @@
+[tool.poetry]
+name = "amakihi"
+version = "0.1.0"
+description = "End-to-end image differencing and transient detection software"
+authors = ["Nicholas Vieira <nicholas.vieira@mail.mcgill.ca>"]
+license = "MIT"
+readme = ["README.md", "AUTHORS.md", "CHANGELOG.md"]
+classifiers = [
+    "Development Status :: 2 - Pre-Alpha",
+    "Intended Audience :: Developers",
+    "License :: OSI Approved :: MIT License",
+    "Natural Language :: English",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+]
+repository = "https://github.com/nvieira-mcgill/amakihi"
+
+[tool.poetry.dependencies]
+python = "^3.8"
+numpy = "^1.23"
+matplotlib = "^3.7"
+scipy = "^1.9"
+astropy = "^5.2"
+photutils = "^1.1"
+scikit-image = "^0.19"
+scikit-learn = "^1.1"
+astroquery = "^0.4"
+lxml = "^4.9.3"
+
+
+[tool.poetry.group.dev.dependencies]
+mypy = "^1.4"
+pytest = "^7.4"
+pre-commit = "^3.3"
+pytest-cov = "^4.1.0"
+commitizen = "^3.5.3"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
diff --git a/setup.cfg b/setup.cfg
deleted file mode 100644
index fc13863..0000000
--- a/setup.cfg
+++ /dev/null
@@ -1,18 +0,0 @@
-[bumpversion]
-current_version = 0.1.0
-commit = True
-tag = True
-
-[bumpversion:file:setup.py]
-search = version='{current_version}'
-replace = version='{new_version}'
-
-[bumpversion:file:amakihi/__init__.py]
-search = __version__ = '{current_version}'
-replace = __version__ = '{new_version}'
-
-[bdist_wheel]
-universal = 1
-
-[flake8]
-exclude = docs
diff --git a/setup.py b/setup.py
deleted file mode 100644
index 6231701..0000000
--- a/setup.py
+++ /dev/null
@@ -1,42 +0,0 @@
-#!/usr/bin/env python
-
-"""The setup script."""
-
-from setuptools import setup, find_packages
-
-with open('README.rst') as readme_file:
-    readme = readme_file.read()
-
-with open('HISTORY.rst') as history_file:
-    history = history_file.read()
-
-requirements = [ ]
-
-test_requirements = [ ]
-
-setup(
-    author="Nicholas Vieira",
-    author_email='nicholas.vieira@mail.mcgill.ca',
-    python_requires='>=3.6',
-    classifiers=[
-        'Development Status :: 2 - Pre-Alpha',
-        'Intended Audience :: Developers',
-        'License :: OSI Approved :: MIT License',
-        'Natural Language :: English',
-        'Programming Language :: Python :: 3',
-        'Programming Language :: Python :: 3.8',
-    ],
-    description="End-to-end image differencing and transient detection software",
-    install_requires=requirements,
-    license="MIT license",
-    long_description=readme + '\n\n' + history,
-    include_package_data=True,
-    keywords='amakihi',
-    name='amakihi',
-    packages=find_packages(include=['amakihi', 'amakihi.*']),
-    test_suite='tests',
-    tests_require=test_requirements,
-    url='https://github.com/nvieira-mcgill/amakihi',
-    version='0.1.0',
-    zip_safe=False,
-)
diff --git a/tests/__init__.py b/tests/__init__.py
new file mode 100644
index 0000000..e69de29
diff --git a/tests/test_import.py b/tests/test_import.py
new file mode 100644
index 0000000..68d3002
--- /dev/null
+++ b/tests/test_import.py
@@ -0,0 +1,8 @@
+"""Test that the package can be imported."""
+
+
+def test_import():
+    """
+    Test that the package can be imported.
+    """
+    import amakihi  # noqa
diff --git a/tox.ini b/tox.ini
deleted file mode 100644
index eeddfe6..0000000
--- a/tox.ini
+++ /dev/null
@@ -1,19 +0,0 @@
-[tox]
-envlist = py36, py37, py38, flake8
-
-[travis]
-python =
-    3.8: py38
-    3.7: py37
-    3.6: py36
-
-[testenv:flake8]
-basepython = python
-deps = flake8
-commands = flake8 amakihi tests
-
-[testenv]
-setenv =
-    PYTHONPATH = {toxinidir}
-
-commands = python setup.py test