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populate mucosal epithelium terms #3449

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dosumis opened this issue Dec 16, 2024 · 1 comment
Open

populate mucosal epithelium terms #3449

dosumis opened this issue Dec 16, 2024 · 1 comment
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@dosumis
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dosumis commented Dec 16, 2024

Aim: Users querying for parts a specific mucosa should find the epithelium term and from there the cell types that are part of that epithelium

We have 120 mucosa terms:

image

But only 60 'epithelium of muscosa' terms

image

To fix:

  • Generate lists of terms
  • modify to isolate general anatomical component & align/diff.
  • --> list of terms to add
  • Remaining terms, review manually.
@dosumis
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dosumis commented Jan 20, 2025

Formal def:

Image

Strategy for query with UberGraph:

  1. Find all mucosa --> what they are part_of
  2. Find all epithelia that are part_of these structures
    --> check if they are subClassOf "epithelium of mucosa"

FOr those that are not - we should be adding part relationship to the relevant mucosa term

Potential difficulty - UberGraph + reasoning will give too many results. Also do we want to add for all grouping terms?

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