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\begin{thebibliography}{10}
\bibitem{The_Tabula_Microcebus_Consortium2022-zo}
{The Tabula Microcebus Consortium}, Camille Ezran, Shixuan Liu, Jingsi Ming,
Lisbeth~A Guethlein, Michael F~Z Wang, Roozbeh Dehghannasiri, Julia Olivieri,
Hannah~K Frank, Alexander Tarashansky, Winston Koh, Qiuyu Jing,
\textbf{\textsc{Olga~B Botvinnik}}, Jane Antony, Stephen Chang,
Angela~Oliveira Pisco, Jim Karkanias, Can Yang, James~E Ferrell, Scott~D
Boyd, Peter Parham, Jonathan~Z Long, Bo~Wang, Julia Salzman, Iwijn
De~Vlaminck, Angela Wu, Stephen~R Quake, and Mark~A Krasnow.
\newblock Mouse lemur transcriptomic atlas elucidates primate genes,
physiology, disease, and evolution.
\newblock {\em bioRxiv}, page 2022.08.06.503035, Aug. 2022.
\bibitem{Tabula_Sapiens_Consortium2022-iy}
{Tabula Sapiens Consortium}.
\newblock {The Tabula Sapiens: A} multiple-organ, single-cell transcriptomic
atlas of humans.
\newblock {\em Science}, 376(6594):eabl4896, May 2022.
\bibitem{Reiter2022-co}
Taylor~E Reiter, N~Tessa Pierce-Ward, Luiz Irber, \textbf{\textsc{Olga~B
Botvinnik}}, and C~Titus~Brown.
\newblock Protein k-mers enable assembly-free microbial metapangenomics.
\newblock {\em bioRxiv}, page 2022.06.27.497795, June 2022.
\bibitem{Ezran2021-ci}
C~Ezran, S~Liu, S~Chang, J~Ming, \textbf{\textsc{Olga~B Botvinnik}}, and
{others}.
\newblock {Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an
emerging primate model organism}.
\newblock {\em bioRxiv}, 2021.
\bibitem{Botvinnik2021-hd}
\textbf{\textsc{Olga~B Botvinnik}}, Venkata Naga~Pranathi Vemuri,
N~Tessa~Pierce, Phoenix~Aja Logan, Saba Nafees, Lekha Karanam, Kyle~Joseph
Travaglini, Camille~Sophie Ezran, Lili Ren, Yanyi Juang, Jianwei Wang,
Jianbin Wang, and C~Titus~Brown.
\newblock Single-cell transcriptomics for the 99.9\% of species without
reference genomes.
\newblock {\em bioRxiv}, page 2021.07.09.450799, July 2021.
\bibitem{Shah2020-qy}
Sachin~J Shah, Peter~N Barish, Priya~A Prasad, Amy Kistler, Norma Neff, Jack
Kamm, Lucy~M Li, Charles~Y Chiu, Jennifer~M Babik, Margaret~C Fang, Yumiko
Abe-Jones, Narges Alipanah, Francisco~N Alvarez, \textbf{\textsc{Olga~B
Botvinnik}}, Gloria Castaneda, {CZB CLIAhub Consortium}, Rand~M Dadasovich,
Jennifer Davis, Xianding Deng, Joseph~L DeRisi, Angela~M Detweiler, Scot
Federman, John Haliburton, Samantha Hao, Andrew~D Kerkhoff, G~Renuka Kumar,
Katherine~B Malcolm, Sabrina~A Mann, Sandra Martinez, Rupa~K Mary, Eran Mick,
Lusajo Mwakibete, Nader Najafi, Michael~J Peluso, Maira Phelps,
Angela~Oliveira Pisco, Kalani Ratnasiri, Luis~A Rubio, Anna Sellas, Kyla~D
Sherwood, Jonathan Sheu, Natasha Spottiswoode, Michelle Tan, Guixia Yu,
Kirsten~Neudoerffer Kangelaris, and Charles Langelier.
\newblock Clinical features, diagnostics, and outcomes of patients presenting
with acute respiratory illness: A retrospective cohort study of patients with
and without {COVID-19}.
\newblock {\em EClinicalMedicine}, 27:100518, Oct. 2020.
\bibitem{Harris2020-oe}
Lincoln Harris, Rohan Vanheusden, \textbf{\textsc{Olga~B Botvinnik}}, and
Spyros Darmanis.
\newblock cerebra: A tool for fast and accurate summarizing of variant calling
format ({VCF}) files.
\newblock {\em J. Open Source Softw.}, 5(54):2432, Oct. 2020.
\bibitem{TabulaMuris:2018gj}
{Tabula Muris Consortium}.
\newblock {Single-cell transcriptomics of 20 mouse organs creates a Tabula
Muris}.
\newblock {\em Nature}, pages 1--25, Oct. 2018,
https://www.biorxiv.org/content/early/2017/12/20/237446.full.pdf.
\bibitem{Klopfenstein2018-jb}
D~V Klopfenstein, Liangsheng Zhang, Brent~S Pedersen, Fidel Ram{\'\i}rez, Alex
Warwick~Vesztrocy, Aur{\'e}lien Naldi, Christopher~J Mungall, Jeffrey~M
Yunes, \textbf{\textsc{Olga~B Botvinnik}}, Mark Weigel, Will Dampier,
Christophe Dessimoz, Patrick Flick, and Haibao Tang.
\newblock {GOATOOLS}: {A Python library for Gene Ontology analyses}.
\newblock {\em Sci. Rep.}, 8(1):10872, July 2018.
\bibitem{song2017}
Yan Song*, \textbf{\textsc{Olga~B Botvinnik*}}, Michael~T Lovci, Boyko
Kakaradov, Patrick Liu, Jia~L Xu, and Gene Yeo.
\newblock {Single-Cell Alternative Splicing Analysis with Expedition Reveals
Splicing Dynamics during Neuron Differentiation}.
\newblock {\em Molecular Cell}, 2017.
\newblock * These authors contributed equally to this work.
\bibitem{Nutter:2016fd}
Curtis~A Nutter, Elizabeth~A Jaworski, Sunil~K Verma, Vaibhav Deshmukh,
Qiongling Wang, \textbf{\textsc{Olga~B Botvinnik}}, Mario~J Lozano, Ismail~J
Abass, Talha Ijaz, Allan~R Brasier, Nisha~J Garg, Xander H~T Wehrens, Gene~W
Yeo, and Muge~N Kuyumcu-Martinez.
\newblock {Dysregulation of RBFOX2 Is an Early Event in Cardiac Pathogenesis of
Diabetes}.
\newblock {\em Cell Reports}, 15(10):2200--2213, 2016.
\bibitem{kim2016characterizing}
Jong~Wook Kim*, \textbf{\textsc{Olga~B Botvinnik*}}, Omar Abudayyeh, Chet
Birger, Joseph Rosenbluh, Yashaswi Shrestha, Mohamed~E Abazeed, Peter~S
Hammerman, Daniel DiCara, David~J Konieczkowski, et~al.
\newblock Characterizing genomic alterations in cancer by complementary
functional associations.
\newblock {\em Nature Biotechnology}, 2016.
\newblock * These authors contributed equally to this work.
\bibitem{wood2012microscale}
Kris~C Wood, David~J Konieczkowski, Cory~M Johannessen, Jesse~S Boehm, Pablo
Tamayo, \textbf{\textsc{Olga~B Botvinnik}}, Jill~P Mesirov, William~C Hahn,
David~E Root, Levi~A Garraway, et~al.
\newblock {MicroSCALE screening reveals genetic modifiers of therapeutic
response in melanoma}.
\newblock {\em Science Signaling}, 5(224):rs4, 2012.
\bibitem{Goncearenco:2012eha}
A~Goncearenco, P~Grynberg, \textbf{\textsc{Olga~B Botvinnik}}, Geoff Macintyre,
and Thomas Abeel.
\newblock {Highlights from the Eighth International Society for Computational
Biology (ISCB) Student Council Symposium 2012}.
\newblock {\em BMC Bioinformatics}, 2012.
\bibitem{galili2012prediction}
Naomi Galili, Pablo Tamayo, \textbf{\textsc{Olga~B Botvinnik}}, Jill~P Mesirov,
Margarita~R Brooks, Gail Brown, and Azra Raza.
\newblock Prediction of response to therapy with ezatiostat in lower risk
myelodysplastic syndrome.
\newblock {\em Journal of Hematology \& Oncology}, 5(1):1, 2012.
\bibitem{galili2011gene}
Naomi Galili, Pablo Tamayo, \textbf{\textsc{Olga~B Botvinnik}}, Jill~P Mesirov,
Jennifer Zikria, Gail Brown, and Azra Raza.
\newblock {Gene Expression Studies May Identify Lower Risk Myelodysplastic
Syndrome Patients Likely to Respond to Therapy with Ezatiostat Hydrochloride
(TLK199)}.
\newblock {\em Blood}, 118(21):2779--2779, 2011.
\bibitem{berger2008variation}
Michael~F Berger, Gwenael Badis, Andrew~R Gehrke, Shaheynoor Talukder,
Anthony~A Philippakis, Lourdes Pena-Castillo, Trevis~M Alleyne, Sanie
Mnaimneh, \textbf{\textsc{Olga~B Botvinnik}}, Esther~T Chan, et~al.
\newblock {Variation in homeodomain DNA binding revealed by high-resolution
analysis of sequence preferences}.
\newblock {\em Cell}, 133(7):1266--1276, 2008.
\end{thebibliography}