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@uwmisl Molecular Information Systems Lab

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    47 repositories

    • PASTOR-sequencing

      Public
      Jupyter Notebook
      •
      MIT License
      •0•5•0•0•Updated Oct 18, 2024Oct 18, 2024

    • HIPified-DTWax

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • syn_bio_vis

      Public
      An interactive tool for teaching and learning molecular programming.
      JavaScript
      •
      MIT License
      •1•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • cas9-similarity-search

      Public
      DNA similarity search using Cas9
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•11•0•Updated Feb 25, 2024Feb 25, 2024

    • poretitioner

      Public
      Python
      •
      Other
      •1•3•35•3•Updated Jul 23, 2023Jul 23, 2023

    • Deep-Molecules

      Public
      Protein Sequence AutoEncoders
      Jupyter Notebook
      •0•2•0•0•Updated May 25, 2023May 25, 2023

    • purpledrop-software

      Public
      Controller software for the PurpleDrop digital microfluidics platform
      Rust
      •
      MIT License
      •0•1•0•36•Updated Jan 5, 2023Jan 5, 2023

    • pd-electrodeboard-pcb-v4

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Sep 27, 2022Sep 27, 2022

    • PorTis

      Public
      Code repository and replication package for PorTis paper
      Jupyter Notebook
      •0•1•0•0•Updated Aug 26, 2022Aug 26, 2022

    • dna-nanopore-computing

      Public
      Analysis pipeline for running DNA circuits on the nanopore
      Jupyter Notebook
      •0•5•0•0•Updated Jul 13, 2022Jul 13, 2022

    • cas9-random-access

      Public
      Random access of DNA data using Cas9 enrichment and nanopore sequencing
      Jupyter Notebook
      •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

    • purpledrop-driver

      Public
      Python driver and gateway for PurpleDrop USB devices
      Python
      •
      MIT License
      •0•1•0•2•Updated Jun 6, 2022Jun 6, 2022

    • purpledrop-3dmodels

      Public
      Repository of 3D printable tools and accessories for building and using PurpleDrop
      0•0•0•0•Updated Apr 13, 2022Apr 13, 2022

    • pd-frame-50x50

      Public
      PCB frame for purpledrop electrode board with 50x50mm top plate
      0•0•0•0•Updated Mar 18, 2022Mar 18, 2022

    • pd-electrodeboard-pcb-v7

      Public
      Electrode Board Design for the PurpleDrop
      Python
      •0•0•0•0•Updated Mar 11, 2022Mar 11, 2022

    • purpledrop-manual

      Public
      Source for generating the purpledrop manual
      Python
      •0•0•0•0•Updated Mar 9, 2022Mar 9, 2022

    • hamiltonPSD

      Public
      simple serial protocol wrapper for hamilton PSD pumps.
      Python
      •
      BSD 2-Clause "Simplified" License
      •0•1•0•0•Updated Mar 8, 2022Mar 8, 2022

    • pd-frame-50x75

      Public
      PCB frame for 50x75mm top plate on Purpledrop
      0•0•0•0•Updated Mar 2, 2022Mar 2, 2022

    • pd-electrodeboard-pcb-v6

      Public
      Python
      •0•0•0•0•Updated Feb 24, 2022Feb 24, 2022

    • dmfwizard

      Public
      Python library for designing digital microfluidic electrode boards with KiCad
      Python
      •0•2•0•0•Updated Feb 23, 2022Feb 23, 2022

    • pdclient

      Public
      Python client for purple drop
      Python
      •0•0•0•0•Updated Feb 16, 2022Feb 16, 2022

    • purpledrop

      Public
      Newest iteration of PurpleDrop. Reimplemented in kicad5
      MIT License
      •1•15•1•0•Updated Feb 15, 2022Feb 15, 2022

    • purpledrop-stm32

      Public
      Embedded application to run on PurpleDrop STM32 controller
      C++
      •
      MIT License
      •0•1•0•0•Updated Feb 15, 2022Feb 15, 2022

    • combinatorial_primer_project

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Dec 21, 2021Dec 21, 2021

    • mach-nix

      Public
      Create highly reproducible python environments
      Python
      •
      MIT License
      •105•0•0•0•Updated Aug 18, 2021Aug 18, 2021

    • primo-similarity-search

      Public
      Code and models for the primo similarity search project
      Jupyter Notebook
      •2•4•5•1•Updated Jul 11, 2021Jul 11, 2021

    • primo-openimages

      Public
      VGG16-FC2 feature vectors for OpenImagesV4
      Jupyter Notebook
      •0•2•4•0•Updated Jul 8, 2021Jul 8, 2021

    • KinDA

      Public
      Kinetic DNA strand displacement analyzer
      Python
      •
      Other
      •5•0•0•0•Updated Jun 10, 2021Jun 10, 2021

    • electrode_board_template_100x74

      Public
      KiCad project template for custom electrode boards
      HTML
      •0•0•0•0•Updated May 5, 2021May 5, 2021

    • storage-biasing-ncomms20

      Public
      data and codes for Nature Communicates 2020. Title: Quantifying Molecular Bias in DNA Data Storage
      Jupyter Notebook
      •1•3•0•0•Updated Apr 8, 2021Apr 8, 2021