From a5b7bb29ff135ab8e4b03f162028d16d99aedfb0 Mon Sep 17 00:00:00 2001 From: Shujun Ou Date: Thu, 14 Jan 2021 10:48:20 -0600 Subject: [PATCH] update --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 09d5f87..2c183ed 100644 --- a/README.md +++ b/README.md @@ -100,6 +100,7 @@ Usage:
Other container source... + `singularity pull EDTA.sif docker://quay.io/biocontainers/edta:1.9.5` Or @@ -111,6 +112,7 @@ Visit [BioContainers](https://quay.io/repository/biocontainers/edta?tab=tags) re
Some downsides of using containers... + 1. It is tricky (for me) to specify files with a path to run EDTA. Softlinked files are considered "with path". So please copy all the files to your work directory to run Singularity/docker containers of EDTA. 2. Similarily, it is tricky to specify paths to dependency programs (i.e., repeatmasker, repeatmodeler).