diff --git a/CHANGELOG.md b/CHANGELOG.md index 5476f126..c77859f5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,3 +1,7 @@ +# Version 0.6.1 + +* Added --output-mlst in Search.py + # Version 0.6.0 * Added [coloredlogs](https://pypi.org/project/coloredlogs/) library to format the output diff --git a/images/search_command.png b/images/search_command.png index 5befa85a..db2e8fe9 100644 Binary files a/images/search_command.png and b/images/search_command.png differ diff --git a/staramr/__init__.py b/staramr/__init__.py index ef7eb44d..8411e551 100644 --- a/staramr/__init__.py +++ b/staramr/__init__.py @@ -1 +1 @@ -__version__ = '0.6.0' +__version__ = '0.6.1' diff --git a/staramr/subcommand/Search.py b/staramr/subcommand/Search.py index f47403f4..f4d09dae 100644 --- a/staramr/subcommand/Search.py +++ b/staramr/subcommand/Search.py @@ -142,6 +142,10 @@ def _setup_args(self, arg_parser): output_group.add_argument('--output-hits-dir', action='store', dest='hits_output_dir', type=str, help="The name of the directory to contain the BLAST hit files. Not be be used with '--output-dir'. [None]", default=None, required=False) + output_group.add_argument('--output-mlst', action='store', dest='output_mlst', type=str, + help="The name of the output file containing the mlst results. Not be be used with '--output-dir'. [None]", + default=None, required=False) + arg_parser.add_argument('files', nargs='+')