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info.yaml
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SAMPLE:
- "151507"
- "151508"
- "151509"
- "151510"
- "151669"
- "151670"
- "151671"
- "151672"
- "151673"
- "151674"
- "151675"
- "151676"
DATASET: "maynard_human_brain_analysis"
OUT_FOLDER: "out_benchmark"
CROSS_VALIDATION_SPLIT:
- [["151507", "151508"], ["151509", "151510", "151669", "151670", "151671", "151672", "151673", "151674", "151675", "151676"]]
- [["151509", "151510"], ["151507", "151508", "151669", "151670", "151671", "151672", "151673", "151674", "151675", "151676"]]
- [["151669", "151670"], ["151507", "151508", "151509", "151510", "151671", "151672", "151673", "151674", "151675", "151676"]]
- [["151671", "151672"], ["151507", "151508", "151509", "151510", "151669", "151670", "151673", "151674", "151675", "151676"]]
- [["151673", "151674"], ["151507", "151508", "151509", "151510", "151669", "151670", "151671", "151672", "151675", "151676"]]
- [["151675", "151676"], ["151507", "151508", "151509", "151510", "151669", "151670", "151671", "151672", "151673", "151674"]]
MODEL_R:
- Leiden
MODEL_PYTHON:
- Baseline
MODEL_FINE_TUNE:
- AESTETIK
- SpaGCN
- GraphST
- STAGATE
- MUSE
- stLearn
- BayesSpace
IMAGE_FEATURES:
- inception
DOWNSAMPLE_FACTOR: 8
IMAGE_FORMAT: "tif"