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Fix post_fastqc #29

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BellaArenas opened this issue Jul 2, 2024 · 0 comments
Open

Fix post_fastqc #29

BellaArenas opened this issue Jul 2, 2024 · 0 comments

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@BellaArenas
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In main.nf, both pre- and post-fastqc is run on the raw, untrimmed reads. spoligo_post is the raw reads, not the trimmed reads (fastp_reads1) from fastp. Furthermore, fastp_reads1 is not used anywhere else in the file. spoligo_post should be removed from the channels.into in Line 184.

Line 247-248:
input:
tuple file(trim1), file(trim2) from spoligo_post

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