From 2fceec95393d5a8cd8b5d0233c6615447bc29e99 Mon Sep 17 00:00:00 2001 From: Wei Shen Date: Tue, 24 Sep 2024 22:43:44 +0100 Subject: [PATCH] docs: update tips for improving searching speed --- faqs/index.html | 24 +++++++++++++++++------- search/en.data.min.json | 2 +- tutorials/search/index.html | 32 +++++++++++++++++++++++++------- 3 files changed, 43 insertions(+), 15 deletions(-) diff --git a/faqs/index.html b/faqs/index.html index e49af8b..f0a55c2 100644 --- a/faqs/index.html +++ b/faqs/index.html @@ -59,7 +59,7 @@ "url" : "https://bioinf.shenwei.me/LexicMap/faqs/", "headline": "FAQs", "description": "Table of contents Table of contents Does LexicMap support short reads? Does LexicMap support fungi genomes? How’s the hardware requirement? Can I extract the matched sequences? How can I extract the upstream and downstream flanking sequences of matched regions? Why isn’t the pident 100% when aligning with a sequence from the reference genomes? Why is LexicMap slow for batch searching? Does LexicMap support short reads? LexicMap is mainly designed for sequence alignment with a small number of queries (gene\/plasmid\/virus\/phage sequences) longer than 200 bp by default.", - "wordCount" : "773", + "wordCount" : "818", "inLanguage": "en", "isFamilyFriendly": "true", "mainEntityOfPage": { @@ -1830,21 +1830,31 @@

FAQs

LexicMap is mainly designed for sequence alignment with a small number of queries against a database with a huge number (up to 17 million) of genomes. There are some ways to improve the search speed of lexicmap search.