diff --git a/notebooks/MultiSolverTest_nodisloc.nbconvert.ipynb b/notebooks/MultiSolverTest_nodisloc.nbconvert.ipynb index 50a6e12..aeae9c4 100644 --- a/notebooks/MultiSolverTest_nodisloc.nbconvert.ipynb +++ b/notebooks/MultiSolverTest_nodisloc.nbconvert.ipynb @@ -2,7 +2,6 @@ "cells": [ { "cell_type": "markdown", - "id": "395bfddb", "metadata": { "hideCode": false, "hidePrompt": false @@ -15,7 +14,6 @@ { "cell_type": "code", "execution_count": 1, - "id": "fd4fcbf9", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:48.795588Z", @@ -32,7 +30,6 @@ { "cell_type": "code", "execution_count": 2, - "id": "6926bdad", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:49.852407Z", @@ -64,7 +61,6 @@ { "cell_type": "code", "execution_count": 3, - "id": "7a6f1e68", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:49.868330Z", @@ -86,7 +82,6 @@ { "cell_type": "code", "execution_count": 4, - "id": "9d62a684", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:50.019088Z", @@ -108,7 +103,6 @@ { "cell_type": "code", "execution_count": 5, - "id": "0a249a9c", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:50.128932Z", @@ -136,7 +130,6 @@ { "cell_type": "code", "execution_count": 6, - "id": "8c8cc9d6", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:50.216124Z", @@ -223,7 +216,6 @@ { "cell_type": "code", "execution_count": 7, - "id": "a79c27c1", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:06:50.284765Z", @@ -255,7 +247,6 @@ { "cell_type": "code", "execution_count": 8, - "id": "b3b50ed0", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T16:07:25.854291Z", @@ -309,7 +300,6 @@ { "cell_type": "code", "execution_count": 9, - "id": "f77e0d7e", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:18.049758Z", @@ -18120,7 +18110,6 @@ { "cell_type": "code", "execution_count": 10, - "id": "1a526a1e", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:18.075561Z", @@ -18141,7 +18130,6 @@ { "cell_type": "code", "execution_count": 11, - "id": "cb666dc4", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:18.319863Z", @@ -18166,7 +18154,6 @@ { "cell_type": "code", "execution_count": 12, - "id": "b7d8fe54", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:19.672733Z", @@ -18206,7 +18193,6 @@ { "cell_type": "code", "execution_count": 13, - "id": "6440b991", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:20.491507Z", @@ -18248,7 +18234,6 @@ { "cell_type": "code", "execution_count": 14, - "id": "b8319dc3", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:22.146075Z", @@ -18292,7 +18277,6 @@ { "cell_type": "code", "execution_count": 15, - "id": "6e4016a5", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:22.164365Z", @@ -18315,7 +18299,6 @@ { "cell_type": "code", "execution_count": 16, - "id": "ec0a71b7", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:33:22.341457Z", @@ -18341,7 +18324,6 @@ { "cell_type": "code", "execution_count": 17, - "id": "2aa2d4b4", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:41:58.261847Z", @@ -18413,7 +18395,6 @@ { "cell_type": "code", "execution_count": 18, - "id": "7ab220e3", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:41:58.586060Z", @@ -18453,7 +18434,6 @@ { "cell_type": "code", "execution_count": 19, - "id": "11e8f49b", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:41:59.170302Z", @@ -18495,7 +18475,6 @@ { "cell_type": "code", "execution_count": 20, - "id": "6cdccb78", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:00.925417Z", @@ -18538,7 +18517,6 @@ { "cell_type": "code", "execution_count": 21, - "id": "dcddb834", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:00.943248Z", @@ -18558,7 +18536,6 @@ }, { "cell_type": "markdown", - "id": "a7ec43c7", "metadata": {}, "source": [ "# Results dump\n", @@ -18568,7 +18545,6 @@ { "cell_type": "code", "execution_count": 22, - "id": "502fa014", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:01.112658Z", @@ -18589,7 +18565,6 @@ { "cell_type": "code", "execution_count": 23, - "id": "d9ddcea7", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:01.206743Z", @@ -18615,7 +18590,6 @@ { "cell_type": "code", "execution_count": 24, - "id": "43fcad6b", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:01.287892Z", @@ -18647,7 +18621,6 @@ { "cell_type": "code", "execution_count": 25, - "id": "d4e290c4", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:01.997337Z", @@ -18690,7 +18663,6 @@ { "cell_type": "code", "execution_count": 26, - "id": "0a8329a0", "metadata": { "ExecuteTime": { "end_time": "2022-07-29T20:42:04.099649Z", @@ -18726,7 +18698,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.8" + "version": "3.8.10" }, "latex_envs": { "LaTeX_envs_menu_present": true, diff --git a/notebooks/MultiSolverTest_screwdisloc.nbconvert.ipynb b/notebooks/MultiSolverTest_screwdisloc.nbconvert.ipynb index dc4ffc8..bb0dbf1 100644 --- a/notebooks/MultiSolverTest_screwdisloc.nbconvert.ipynb +++ b/notebooks/MultiSolverTest_screwdisloc.nbconvert.ipynb @@ -2,20 +2,18 @@ "cells": [ { "cell_type": "markdown", - "id": "395bfddb", "metadata": { "hideCode": false, "hidePrompt": false }, "source": [ "# Multi-reflection BCDI: reconstruction notebook\n", - "## Compact crystal with single screw dislocation\n" + "## Compact crystal with two screw dislocations\n" ] }, { "cell_type": "code", "execution_count": 1, - "id": "bbde76f1", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:01.228555Z", @@ -32,7 +30,6 @@ { "cell_type": "code", "execution_count": 2, - "id": "6926bdad", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:02.394306Z", @@ -65,7 +62,6 @@ { "cell_type": "code", "execution_count": 3, - "id": "7a6f1e68", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:02.411114Z", @@ -89,7 +85,6 @@ { "cell_type": "code", "execution_count": 4, - "id": "9d62a684", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:02.550719Z", @@ -113,7 +108,6 @@ { "cell_type": "code", "execution_count": 5, - "id": "0a249a9c", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:02.657551Z", @@ -140,7 +134,6 @@ { "cell_type": "code", "execution_count": 6, - "id": "8c8cc9d6", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T03:06:08.133541Z", @@ -254,7 +247,6 @@ { "cell_type": "code", "execution_count": 7, - "id": "f77e0d7e", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:13:09.459486Z", @@ -29281,7 +29273,6 @@ { "cell_type": "code", "execution_count": 8, - "id": "b7d8fe54", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:13:09.919967Z", @@ -29332,7 +29323,6 @@ { "cell_type": "code", "execution_count": 9, - "id": "61cf7d6b", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:13:09.935036Z", @@ -29357,7 +29347,6 @@ { "cell_type": "code", "execution_count": 10, - "id": "2641bb5d", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:47.605349Z", @@ -29431,7 +29420,6 @@ { "cell_type": "code", "execution_count": 11, - "id": "f0b47fe7", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:47.935923Z", @@ -29471,7 +29459,6 @@ { "cell_type": "code", "execution_count": 12, - "id": "2355ff3c", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:47.951960Z", @@ -29492,7 +29479,6 @@ { "cell_type": "code", "execution_count": 13, - "id": "c208763b", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:48.017270Z", @@ -29516,7 +29502,6 @@ { "cell_type": "code", "execution_count": 14, - "id": "6440b991", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:48.687031Z", @@ -29561,7 +29546,6 @@ { "cell_type": "code", "execution_count": 15, - "id": "b8319dc3", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:50.186954Z", @@ -29606,7 +29590,6 @@ { "cell_type": "code", "execution_count": 16, - "id": "dcddb834", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:50.203072Z", @@ -29629,7 +29612,6 @@ { "cell_type": "code", "execution_count": 17, - "id": "3a9a5e8d", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:52.496479Z", @@ -29686,7 +29668,6 @@ { "cell_type": "code", "execution_count": 18, - "id": "fb785bd9", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:52.520280Z", @@ -29709,7 +29690,6 @@ { "cell_type": "code", "execution_count": 19, - "id": "f6228226", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:53.150183Z", @@ -29746,7 +29726,7 @@ } ], "source": [ - "n = 20\n", + "n = 15\n", "st = 'reciprocal_space/dataset_%d'%n\n", "tp.TilePlot( \n", " tuple( \n", @@ -29763,7 +29743,6 @@ { "cell_type": "code", "execution_count": null, - "id": "dd3500fb", "metadata": { "ExecuteTime": { "end_time": "2022-07-30T07:48:53.151856Z", @@ -29801,7 +29780,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.8" + "version": "3.8.10" }, "latex_envs": { "LaTeX_envs_menu_present": true, diff --git a/notebooks/SiC_6peaks.nbconvert.ipynb b/notebooks/SiC_6peaks.nbconvert.ipynb index c0b6bca..996facf 100644 --- a/notebooks/SiC_6peaks.nbconvert.ipynb +++ b/notebooks/SiC_6peaks.nbconvert.ipynb @@ -2,7 +2,6 @@ "cells": [ { "cell_type": "markdown", - "id": "395bfddb", "metadata": { "hideCode": false, "hideOutput": true, @@ -16,7 +15,6 @@ { "cell_type": "code", "execution_count": null, - "id": "b7f5e6a6", "metadata": {}, "outputs": [], "source": [ @@ -28,7 +26,6 @@ { "cell_type": "code", "execution_count": 1, - "id": "6926bdad", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.089692Z", @@ -58,7 +55,6 @@ { "cell_type": "code", "execution_count": 2, - "id": "7a6f1e68", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.105878Z", @@ -80,7 +76,6 @@ { "cell_type": "code", "execution_count": 3, - "id": "9d62a684", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.265785Z", @@ -102,7 +97,6 @@ { "cell_type": "code", "execution_count": 4, - "id": "0a249a9c", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.352461Z", @@ -138,7 +132,6 @@ { "cell_type": "code", "execution_count": 5, - "id": "c064ec79", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.442325Z", @@ -159,7 +152,6 @@ { "cell_type": "code", "execution_count": 6, - "id": "9bc9e4a7", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.540478Z", @@ -211,7 +203,6 @@ { "cell_type": "code", "execution_count": 7, - "id": "4aacd2c6", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:53.644523Z", @@ -243,7 +234,6 @@ { "cell_type": "code", "execution_count": 8, - "id": "8c8cc9d6", "metadata": { "ExecuteTime": { "end_time": "2022-04-24T18:31:59.986077Z", @@ -299,7 +289,6 @@ { "cell_type": "code", "execution_count": 9, - "id": "f77e0d7e", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.651459Z", @@ -35750,7 +35739,6 @@ { "cell_type": "code", "execution_count": 10, - "id": "074ac6ed", "metadata": { "execution": { "iopub.execute_input": "2022-05-13T23:09:10.676460Z", @@ -35786,7 +35774,6 @@ { "cell_type": "code", "execution_count": 11, - "id": "1dbaf499", "metadata": { "execution": { "iopub.execute_input": "2022-05-13T23:09:11.157122Z", @@ -35856,7 +35843,6 @@ { "cell_type": "code", "execution_count": 12, - "id": "cb666dc4", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.653769Z", @@ -35881,7 +35867,6 @@ { "cell_type": "code", "execution_count": 13, - "id": "b7d8fe54", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.654548Z", @@ -35921,7 +35906,6 @@ { "cell_type": "code", "execution_count": 14, - "id": "6440b991", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.655989Z", @@ -35964,7 +35948,6 @@ { "cell_type": "code", "execution_count": 15, - "id": "b8319dc3", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.657640Z", @@ -36007,7 +35990,6 @@ { "cell_type": "code", "execution_count": 16, - "id": "54292a10", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.659010Z", @@ -36114,7 +36096,6 @@ { "cell_type": "code", "execution_count": 17, - "id": "dcddb834", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.660456Z", @@ -36134,17 +36115,15 @@ }, { "cell_type": "markdown", - "id": "a7ec43c7", "metadata": {}, "source": [ "# Results dump\n", - "Accessible in HDF5 file named `Result_AuNanocrystal.h5`. " + "Accessible in HDF5 file named `Results_SiC.h5`. " ] }, { "cell_type": "code", "execution_count": 18, - "id": "502fa014", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.661769Z", @@ -36165,7 +36144,6 @@ { "cell_type": "code", "execution_count": 19, - "id": "d9ddcea7", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.663039Z", @@ -36191,7 +36169,6 @@ { "cell_type": "code", "execution_count": 20, - "id": "43fcad6b", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.664405Z", @@ -36223,7 +36200,6 @@ { "cell_type": "code", "execution_count": 21, - "id": "d4e290c4", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.665874Z", @@ -36266,7 +36242,6 @@ { "cell_type": "code", "execution_count": 22, - "id": "0a8329a0", "metadata": { "ExecuteTime": { "end_time": "2022-04-21T16:20:27.667137Z", @@ -36303,7 +36278,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.8.8" + "version": "3.8.10" }, "latex_envs": { "LaTeX_envs_menu_present": true,