From a7b60fa5539991e0e75fff6c34c1b2f50f3b3e83 Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Mon, 27 May 2024 17:34:56 -0600 Subject: [PATCH 01/19] first remove manage_externals and update docs --- .github/PULL_REQUEST_TEMPLATE.md | 2 +- Externals.cfg | 94 - Externals_CLM.cfg | 9 - README | 6 +- manage_externals/.dir_locals.el | 12 - manage_externals/.github/ISSUE_TEMPLATE.md | 6 - .../.github/PULL_REQUEST_TEMPLATE.md | 17 - .../.github/workflows/bumpversion.yml | 19 - manage_externals/.github/workflows/tests.yml | 30 - manage_externals/.gitignore | 17 - manage_externals/.travis.yml | 18 - manage_externals/LICENSE.txt | 34 - manage_externals/README.md | 231 -- manage_externals/README_FIRST | 54 - manage_externals/checkout_externals | 36 - manage_externals/manic/__init__.py | 9 - manage_externals/manic/checkout.py | 446 ---- .../manic/externals_description.py | 830 -------- manage_externals/manic/externals_status.py | 164 -- manage_externals/manic/global_constants.py | 18 - 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diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 7c9512c9c3..c4a381383b 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -16,7 +16,7 @@ Testing performed, if any: (List what testing you did to show your changes worked as expected) (This can be manual testing or running of the different test suites) (Documentation on system testing is here: https://github.com/ESCOMP/ctsm/wiki/System-Testing-Guide) -(aux_clm on cheyenne for intel/gnu and izumi for intel/gnu/nag/pgi is the standard for tags on master) +(aux_clm on derecho for intel/gnu and izumi for intel/gnu/nag/nvhpc is the standard for tags on master) **NOTE: Be sure to check your coding style against the standard (https://github.com/ESCOMP/ctsm/wiki/CTSM-coding-guidelines) and review diff --git a/Externals.cfg b/Externals.cfg deleted file mode 100644 index 70d103a94b..0000000000 --- a/Externals.cfg +++ /dev/null @@ -1,94 +0,0 @@ -[clm] -local_path = . -protocol = externals_only -externals = Externals_CLM.cfg -required = True - -[cism] -local_path = components/cism -protocol = git -repo_url = https://github.com/ESCOMP/CISM-wrapper -tag = cismwrap_2_1_100 -externals = Externals_CISM.cfg -required = True - -[rtm] -local_path = components/rtm -protocol = git -repo_url = https://github.com/ESCOMP/RTM -tag = rtm1_0_79 -required = True - -[mosart] -local_path = components/mosart -protocol = git -repo_url = https://github.com/ESCOMP/MOSART -tag = mosart1_0_49 -required = True - -[mizuRoute] -tag = cesm-coupling.n02_v2.1.2 -protocol = git -local_path = components/mizuroute -repo_url = https://github.com/ESCOMP/mizuRoute -required = True - -[ccs_config] -tag = ccs_config_cesm0.0.106 -protocol = git -repo_url = https://github.com/ESMCI/ccs_config_cesm.git -local_path = ccs_config -required = True - -[cime] -local_path = cime -protocol = git -repo_url = https://github.com/ESMCI/cime -tag = cime6.0.238_httpsbranch01 -required = True - -[cmeps] -tag = cmeps0.14.63 -protocol = git -repo_url = https://github.com/ESCOMP/CMEPS.git -local_path = components/cmeps -required = True - -[cdeps] -tag = cdeps1.0.33 -protocol = git -repo_url = https://github.com/ESCOMP/CDEPS.git -local_path = components/cdeps -externals = Externals_CDEPS.cfg -required = True - -[share] -tag = share1.0.18 -protocol = git -repo_url = https://github.com/ESCOMP/CESM_share -local_path = share -required = True - -[mct] -tag = MCT_2.11.0 -protocol = git -repo_url = https://github.com/MCSclimate/MCT -local_path = libraries/mct -required = True - -[parallelio] -tag = pio2_6_2 -protocol = git -repo_url = https://github.com/NCAR/ParallelIO -local_path = libraries/parallelio -required = True - -[doc-builder] -local_path = doc/doc-builder -protocol = git -repo_url = https://github.com/ESMCI/doc-builder -tag = v1.0.8 -required = False - -[externals_description] -schema_version = 1.0.0 diff --git a/Externals_CLM.cfg b/Externals_CLM.cfg deleted file mode 100644 index 866b9ac5b2..0000000000 --- a/Externals_CLM.cfg +++ /dev/null @@ -1,9 +0,0 @@ -[fates] -local_path = src/fates -protocol = git -repo_url = https://github.com/NGEET/fates -tag = sci.1.73.0_api.35.0.0 -required = True - -[externals_description] -schema_version = 1.0.0 diff --git a/README b/README index af45a14909..0f1a38edf3 100644 --- a/README +++ b/README @@ -49,7 +49,7 @@ src --------------- CTSM Source code. lilac ------------- Lightweight Infrastructure for Land-Atmosphere Coupling (for coupling to a host atmosphere model) tools ------------- CTSM Offline tools to prepare input datasets and process output. cime_config ------- Configuration files of cime for compsets and CTSM settings -manage_externals -- Script to manage the external source directories (deprecated) +bin/git-fleximod -- Script to manage the external source directories py_env_create ----- Script to setup the python environment for CTSM python tools using conda python ------------ Python modules used in tools and testing and automated checking of ALL CTSM python scirpts @@ -73,7 +73,6 @@ Top level documentation ($CTSMROOT): README ------------------- This file README.md ---------------- File that displays on github under https::/github.com/ESCOMP/CTSM.git README.rst --------------- File that displays under the project in github -README_EXTERNALS.rst ----- Information on how to work with manage_externals for CTSM (deprecated) CODE_OF_CONDUCT.md ------- Code of Conduct for how to work with each other on the CTSM project Copyright ---------------- CESM Copyright file doc/UpdateChangeLog.pl --- Script to add documentation on a tag to the @@ -97,9 +96,6 @@ bld/namelist_files/namelist_defaults_ctsm.xml ----- Default values Important files in main directories (under $CTSMROOT): ============================================================================================= -Externals.cfg --------------- File for management of the main high level external (deprecated) -Externals_CLM.cfg ----------- File for management of the CTSM specific externals (i.e. FATES) - run_sys_tests --------------- Python script to send the standard CTSM testing off (submits the create_test test suite for several different compilers on the machines we do standard CTSM testing on). diff --git a/manage_externals/.dir_locals.el b/manage_externals/.dir_locals.el deleted file mode 100644 index a370490e92..0000000000 --- a/manage_externals/.dir_locals.el +++ /dev/null @@ -1,12 +0,0 @@ -; -*- mode: Lisp -*- - -((python-mode - . ( - ;; fill the paragraph to 80 columns when using M-q - (fill-column . 80) - - ;; Use 4 spaces to indent in Python - (python-indent-offset . 4) - (indent-tabs-mode . nil) - ))) - diff --git a/manage_externals/.github/ISSUE_TEMPLATE.md b/manage_externals/.github/ISSUE_TEMPLATE.md deleted file mode 100644 index 8ecb2ae64b..0000000000 --- a/manage_externals/.github/ISSUE_TEMPLATE.md +++ /dev/null @@ -1,6 +0,0 @@ -### Summary of Issue: -### Expected behavior and actual behavior: -### Steps to reproduce the problem (should include model description file(s) or link to publi c repository): -### What is the changeset ID of the code, and the machine you are using: -### have you modified the code? If so, it must be committed and available for testing: -### Screen output or log file showing the error message and context: diff --git a/manage_externals/.github/PULL_REQUEST_TEMPLATE.md b/manage_externals/.github/PULL_REQUEST_TEMPLATE.md deleted file mode 100644 index b68b1fb5e2..0000000000 --- a/manage_externals/.github/PULL_REQUEST_TEMPLATE.md +++ /dev/null @@ -1,17 +0,0 @@ -[ 50 character, one line summary ] - -[ Description of the changes in this commit. It should be enough - information for someone not following this development to understand. - Lines should be wrapped at about 72 characters. ] - -User interface changes?: [ No/Yes ] -[ If yes, describe what changed, and steps taken to ensure backward compatibilty ] - -Fixes: [Github issue #s] And brief description of each issue. - -Testing: - test removed: - unit tests: - system tests: - manual testing: - diff --git a/manage_externals/.github/workflows/bumpversion.yml b/manage_externals/.github/workflows/bumpversion.yml deleted file mode 100644 index f4dc9b7ca5..0000000000 --- a/manage_externals/.github/workflows/bumpversion.yml +++ /dev/null @@ -1,19 +0,0 @@ -name: Bump version -on: - push: - branches: - - main -jobs: - build: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - name: Bump version and push tag - id: tag_version - uses: mathieudutour/github-tag-action@v5.5 - with: - github_token: ${{ secrets.GITHUB_TOKEN }} - create_annotated_tag: true - default_bump: patch - dry_run: false - tag_prefix: manic- diff --git a/manage_externals/.github/workflows/tests.yml b/manage_externals/.github/workflows/tests.yml deleted file mode 100644 index dd75b91b49..0000000000 --- a/manage_externals/.github/workflows/tests.yml +++ /dev/null @@ -1,30 +0,0 @@ -# This is a workflow to compile the cmeps source without cime -name: Test Manic - -# Controls when the action will run. Triggers the workflow on push or pull request -# events but only for the master branch -on: - push: - branches: [ main ] - pull_request: - branches: [ main ] - -# A workflow run is made up of one or more jobs that can run sequentially or in parallel -jobs: - test-manic: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - name: Test Manic - run: | - pushd test - git config --global user.email "devnull@example.com" - git config --global user.name "GITHUB tester" - git config --global protocol.file.allow always - make utest - make stest - popd - - - name: Setup tmate session - if: ${{ failure() }} - uses: mxschmitt/action-tmate@v3 diff --git a/manage_externals/.gitignore b/manage_externals/.gitignore deleted file mode 100644 index a71ac0cd75..0000000000 --- a/manage_externals/.gitignore +++ /dev/null @@ -1,17 +0,0 @@ -# directories that are checked out by the tool -cime/ -cime_config/ -components/ - -# generated local files -*.log - -# editor files -*~ -*.bak - -# generated python files -*.pyc - -# test tmp file -test/tmp diff --git a/manage_externals/.travis.yml b/manage_externals/.travis.yml deleted file mode 100644 index d9b24c584d..0000000000 --- a/manage_externals/.travis.yml +++ /dev/null @@ -1,18 +0,0 @@ -language: python -os: linux -python: - - "3.4" - - "3.5" - - "3.6" - - "3.7" - - "3.8" -install: - - pip install -r test/requirements.txt -before_script: - - git --version -script: - - cd test; make test - - cd test; make lint -after_success: - - cd test; make coverage - - cd test; coveralls diff --git a/manage_externals/LICENSE.txt b/manage_externals/LICENSE.txt deleted file mode 100644 index 665ee03fbc..0000000000 --- a/manage_externals/LICENSE.txt +++ /dev/null @@ -1,34 +0,0 @@ -Copyright (c) 2017-2018, University Corporation for Atmospheric Research (UCAR) -All rights reserved. - -Developed by: - University Corporation for Atmospheric Research - National Center for Atmospheric Research - https://www2.cesm.ucar.edu/working-groups/sewg - -Permission is hereby granted, free of charge, to any person obtaining -a copy of this software and associated documentation files (the "Software"), -to deal with the Software without restriction, including without limitation -the rights to use, copy, modify, merge, publish, distribute, sublicense, -and/or sell copies of the Software, and to permit persons to whom -the Software is furnished to do so, subject to the following conditions: - - - Redistributions of source code must retain the above copyright notice, - this list of conditions and the following disclaimers. - - Redistributions in binary form must reproduce the above copyright notice, - this list of conditions and the following disclaimers in the documentation - and/or other materials provided with the distribution. - - Neither the names of [Name of Development Group, UCAR], - nor the names of its contributors may be used to endorse or promote - products derived from this Software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" -AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE -IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE -ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE -LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR -CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF -SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS -INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN -CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) -ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE -POSSIBILITY OF SUCH DAMAGE. diff --git a/manage_externals/README.md b/manage_externals/README.md deleted file mode 100644 index 9475301b5d..0000000000 --- a/manage_externals/README.md +++ /dev/null @@ -1,231 +0,0 @@ --- AUTOMATICALLY GENERATED FILE. DO NOT EDIT -- - -[![Build Status](https://travis-ci.org/ESMCI/manage_externals.svg?branch=master)](https://travis-ci.org/ESMCI/manage_externals)[![Coverage Status](https://coveralls.io/repos/github/ESMCI/manage_externals/badge.svg?branch=master)](https://coveralls.io/github/ESMCI/manage_externals?branch=master) -``` -usage: checkout_externals [-h] [-e [EXTERNALS]] [-o] [-S] [-v] [--backtrace] - [-d] [--no-logging] - -checkout_externals manages checking out groups of externals from revision -control based on a externals description file. By default only the -required externals are checkout out. - -Operations performed by manage_externals utilities are explicit and -data driven. checkout_externals will always make the working copy *exactly* -match what is in the externals file when modifying the working copy of -a repository. - -If checkout_externals isn't doing what you expected, double check the contents -of the externals description file. - -Running checkout_externals without the '--status' option will always attempt to -synchronize the working copy to exactly match the externals description. - -optional arguments: - -h, --help show this help message and exit - -e [EXTERNALS], --externals [EXTERNALS] - The externals description filename. Default: - Externals.cfg. - -o, --optional By default only the required externals are checked - out. This flag will also checkout the optional - externals. - -S, --status Output status of the repositories managed by - checkout_externals. By default only summary - information is provided. Use verbose output to see - details. - -v, --verbose Output additional information to the screen and log - file. This flag can be used up to two times, - increasing the verbosity level each time. - --backtrace DEVELOPER: show exception backtraces as extra - debugging output - -d, --debug DEVELOPER: output additional debugging information to - the screen and log file. - --no-logging DEVELOPER: disable logging. - -``` -NOTE: checkout_externals *MUST* be run from the root of the source tree it -is managing. For example, if you cloned a repository with: - - $ git clone git@github.com/{SOME_ORG}/some-project some-project-dev - -Then the root of the source tree is /path/to/some-project-dev. If you -obtained a sub-project via a checkout of another project: - - $ git clone git@github.com/{SOME_ORG}/some-project some-project-dev - -and you need to checkout the sub-project externals, then the root of the -source tree is /path/to/some-project-dev. Do *NOT* run checkout_externals -from within /path/to/some-project-dev/sub-project - -The root of the source tree will be referred to as `${SRC_ROOT}` below. - -# Supported workflows - - * Checkout all required components from the default externals - description file: - - $ cd ${SRC_ROOT} - $ ./manage_externals/checkout_externals - - * To update all required components to the current values in the - externals description file, re-run checkout_externals: - - $ cd ${SRC_ROOT} - $ ./manage_externals/checkout_externals - - If there are *any* modifications to *any* working copy according - to the git or svn 'status' command, checkout_externals - will not update any external repositories. Modifications - include: modified files, added files, removed files, or missing - files. - - To avoid this safety check, edit the externals description file - and comment out the modified external block. - - * Checkout all required components from a user specified externals - description file: - - $ cd ${SRC_ROOT} - $ ./manage_externals/checkout_externals --externals my-externals.cfg - - * Status summary of the repositories managed by checkout_externals: - - $ cd ${SRC_ROOT} - $ ./manage_externals/checkout_externals --status - - ./cime - s ./components/cism - ./components/mosart - e-o ./components/rtm - M ./src/fates - e-o ./tools/PTCLM - - where: - * column one indicates the status of the repository in relation - to the externals description file. - * column two indicates whether the working copy has modified files. - * column three shows how the repository is managed, optional or required - - Column one will be one of these values: - * s : out-of-sync : repository is checked out at a different commit - compared with the externals description - * e : empty : directory does not exist - checkout_externals has not been run - * ? : unknown : directory exists but .git or .svn directories are missing - - Column two will be one of these values: - * M : Modified : modified, added, deleted or missing files - * : blank / space : clean - * - : dash : no meaningful state, for empty repositories - - Column three will be one of these values: - * o : optional : optionally repository - * : blank / space : required repository - - * Detailed git or svn status of the repositories managed by checkout_externals: - - $ cd ${SRC_ROOT} - $ ./manage_externals/checkout_externals --status --verbose - -# Externals description file - - The externals description contains a list of the external - repositories that are used and their version control locations. The - file format is the standard ini/cfg configuration file format. Each - external is defined by a section containing the component name in - square brackets: - - * name (string) : component name, e.g. [cime], [cism], etc. - - Each section has the following keyword-value pairs: - - * required (boolean) : whether the component is a required checkout, - 'true' or 'false'. - - * local_path (string) : component path *relative* to where - checkout_externals is called. - - * protoctol (string) : version control protocol that is used to - manage the component. Valid values are 'git', 'svn', - 'externals_only'. - - Switching an external between different protocols is not - supported, e.g. from svn to git. To switch protocols, you need to - manually move the old working copy to a new location. - - Note: 'externals_only' will only process the external's own - external description file without trying to manage a repository - for the component. This is used for retreiving externals for - standalone components like cam and clm. If the source root of the - externals_only component is the same as the main source root, then - the local path must be set to '.', the unix current working - directory, e. g. 'local_path = .' - - * repo_url (string) : URL for the repository location, examples: - * https://svn-ccsm-models.cgd.ucar.edu/glc - * git@github.com:esmci/cime.git - * /path/to/local/repository - * . - - NOTE: To operate on only the local clone and and ignore remote - repositories, set the url to '.' (the unix current path), - i.e. 'repo_url = .' . This can be used to checkout a local branch - instead of the upstream branch. - - If a repo url is determined to be a local path (not a network url) - then user expansion, e.g. ~/, and environment variable expansion, - e.g. $HOME or $REPO_ROOT, will be performed. - - Relative paths are difficult to get correct, especially for mixed - use repos. It is advised that local paths expand to absolute paths. - If relative paths are used, they should be relative to one level - above local_path. If local path is 'src/foo', the the relative url - should be relative to 'src'. - - * tag (string) : tag to checkout - - * hash (string) : the git hash to checkout. Only applies to git - repositories. - - * branch (string) : branch to checkout from the specified - repository. Specifying a branch on a remote repository means that - checkout_externals will checkout the version of the branch in the remote, - not the the version in the local repository (if it exists). - - Note: one and only one of tag, branch hash must be supplied. - - * externals (string) : used to make manage_externals aware of - sub-externals required by an external. This is a relative path to - the external's root directory. For example, the main externals - description has an external checkout out at 'src/useful_library'. - useful_library requires additional externals to be complete. - Those additional externals are managed from the source root by the - externals description file pointed 'useful_library/sub-xternals.cfg', - Then the main 'externals' field in the top level repo should point to - 'sub-externals.cfg'. - Note that by default, `checkout_externals` will clone an external's - submodules. As a special case, the entry, `externals = None`, will - prevent this behavior. For more control over which externals are - checked out, create an externals file (and see the `from_submodule` - configuration entry below). - - * from_submodule (True / False) : used to pull the repo_url, local_path, - and hash properties for this external from the .gitmodules file in - this repository. Note that the section name (the entry in square - brackets) must match the name in the .gitmodules file. - If from_submodule is True, the protocol must be git and no repo_url, - local_path, hash, branch, or tag entries are allowed. - Default: False - - * sparse (string) : used to control a sparse checkout. This optional - entry should point to a filename (path relative to local_path) that - contains instructions on which repository paths to include (or - exclude) from the working tree. - See the "SPARSE CHECKOUT" section of https://git-scm.com/docs/git-read-tree - Default: sparse checkout is disabled - - * Lines begining with '#' or ';' are comments and will be ignored. - -# Obtaining this tool, reporting issues, etc. - - The master repository for manage_externals is - https://github.com/ESMCI/manage_externals. Any issues with this tool - should be reported there. diff --git a/manage_externals/README_FIRST b/manage_externals/README_FIRST deleted file mode 100644 index c8a47d7806..0000000000 --- a/manage_externals/README_FIRST +++ /dev/null @@ -1,54 +0,0 @@ -CESM is comprised of a number of different components that are -developed and managed independently. Each component may have -additional 'external' dependancies and optional parts that are also -developed and managed independently. - -The checkout_externals.py tool manages retreiving and updating the -components and their externals so you have a complete set of source -files for the model. - -checkout_externals.py relies on a model description file that -describes what components are needed, where to find them and where to -put them in the source tree. The default file is called "CESM.xml" -regardless of whether you are checking out CESM or a standalone -component. - -checkout_externals requires access to git and svn repositories that -require authentication. checkout_externals may pass through -authentication requests, but it will not cache them for you. For the -best and most robust user experience, you should have svn and git -working without password authentication. See: - - https://help.github.com/articles/connecting-to-github-with-ssh/ - - ?svn ref? - -NOTE: checkout_externals.py *MUST* be run from the root of the source -tree it is managing. For example, if you cloned CLM with: - - $ git clone git@github.com/ncar/clm clm-dev - -Then the root of the source tree is /path/to/cesm-dev. If you obtained -CLM via an svn checkout of CESM and you need to checkout the CLM -externals, then the root of the source tree for CLM is: - - /path/to/cesm-dev/components/clm - -The root of the source tree will be referred to as ${SRC_ROOT} below. - -To get started quickly, checkout all required components from the -default model description file: - - $ cd ${SRC_ROOT} - $ ./checkout_cesm/checkout_externals.py - -For additional information about using checkout model, please see: - - ${SRC_ROOT}/checkout_cesm/README - -or run: - - $ cd ${SRC_ROOT} - $ ./checkout_cesm/checkout_externals.py --help - - diff --git a/manage_externals/checkout_externals b/manage_externals/checkout_externals deleted file mode 100755 index 48bce24010..0000000000 --- a/manage_externals/checkout_externals +++ /dev/null @@ -1,36 +0,0 @@ -#!/usr/bin/env python3 - -"""Main driver wrapper around the manic/checkout utility. - -Tool to assemble external respositories represented in an externals -description file. - -""" -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import sys -import traceback - -import manic - -if sys.hexversion < 0x02070000: - print(70 * '*') - print('ERROR: {0} requires python >= 2.7.x. '.format(sys.argv[0])) - print('It appears that you are running python {0}'.format( - '.'.join(str(x) for x in sys.version_info[0:3]))) - print(70 * '*') - sys.exit(1) - - -if __name__ == '__main__': - ARGS = manic.checkout.commandline_arguments() - try: - RET_STATUS, _ = manic.checkout.main(ARGS) - sys.exit(RET_STATUS) - except Exception as error: # pylint: disable=broad-except - manic.printlog(str(error)) - if ARGS.backtrace: - traceback.print_exc() - sys.exit(1) diff --git a/manage_externals/manic/__init__.py b/manage_externals/manic/__init__.py deleted file mode 100644 index 11badedd3b..0000000000 --- a/manage_externals/manic/__init__.py +++ /dev/null @@ -1,9 +0,0 @@ -"""Public API for the manage_externals library -""" - -from manic import checkout -from manic.utils import printlog - -__all__ = [ - 'checkout', 'printlog', -] diff --git a/manage_externals/manic/checkout.py b/manage_externals/manic/checkout.py deleted file mode 100755 index 3f5537adce..0000000000 --- a/manage_externals/manic/checkout.py +++ /dev/null @@ -1,446 +0,0 @@ -#!/usr/bin/env python3 - -""" -Tool to assemble repositories represented in a model-description file. - -If loaded as a module (e.g., in a component's buildcpp), it can be used -to check the validity of existing subdirectories and load missing sources. -""" -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import argparse -import logging -import os -import os.path -import sys - -from manic.externals_description import create_externals_description -from manic.externals_description import read_externals_description_file -from manic.externals_status import check_safe_to_update_repos -from manic.sourcetree import SourceTree -from manic.utils import printlog, fatal_error -from manic.global_constants import VERSION_SEPERATOR, LOG_FILE_NAME - -if sys.hexversion < 0x02070000: - print(70 * '*') - print('ERROR: {0} requires python >= 2.7.x. '.format(sys.argv[0])) - print('It appears that you are running python {0}'.format( - VERSION_SEPERATOR.join(str(x) for x in sys.version_info[0:3]))) - print(70 * '*') - sys.exit(1) - - -# --------------------------------------------------------------------- -# -# User input -# -# --------------------------------------------------------------------- -def commandline_arguments(args=None): - """Process the command line arguments - - Params: args - optional args. Should only be used during systems - testing. - - Returns: processed command line arguments - """ - description = ''' - -%(prog)s manages checking out groups of externals from revision -control based on an externals description file. By default only the -required externals are checkout out. - -Running %(prog)s without the '--status' option will always attempt to -synchronize the working copy to exactly match the externals description. -''' - - epilog = ''' -``` -NOTE: %(prog)s *MUST* be run from the root of the source tree it -is managing. For example, if you cloned a repository with: - - $ git clone git@github.com/{SOME_ORG}/some-project some-project-dev - -Then the root of the source tree is /path/to/some-project-dev. If you -obtained a sub-project via a checkout of another project: - - $ git clone git@github.com/{SOME_ORG}/some-project some-project-dev - -and you need to checkout the sub-project externals, then the root of the -source tree remains /path/to/some-project-dev. Do *NOT* run %(prog)s -from within /path/to/some-project-dev/sub-project - -The root of the source tree will be referred to as `${SRC_ROOT}` below. - - -# Supported workflows - - * Checkout all required components from the default externals - description file: - - $ cd ${SRC_ROOT} - $ ./manage_externals/%(prog)s - - * To update all required components to the current values in the - externals description file, re-run %(prog)s: - - $ cd ${SRC_ROOT} - $ ./manage_externals/%(prog)s - - If there are *any* modifications to *any* working copy according - to the git or svn 'status' command, %(prog)s - will not update any external repositories. Modifications - include: modified files, added files, removed files, or missing - files. - - To avoid this safety check, edit the externals description file - and comment out the modified external block. - - * Checkout all required components from a user specified externals - description file: - - $ cd ${SRC_ROOT} - $ ./manage_externals/%(prog)s --externals my-externals.cfg - - * Status summary of the repositories managed by %(prog)s: - - $ cd ${SRC_ROOT} - $ ./manage_externals/%(prog)s --status - - ./cime - s ./components/cism - ./components/mosart - e-o ./components/rtm - M ./src/fates - e-o ./tools/PTCLM - - - where: - * column one indicates the status of the repository in relation - to the externals description file. - * column two indicates whether the working copy has modified files. - * column three shows how the repository is managed, optional or required - - Column one will be one of these values: - * s : out-of-sync : repository is checked out at a different commit - compared with the externals description - * e : empty : directory does not exist - %(prog)s has not been run - * ? : unknown : directory exists but .git or .svn directories are missing - - Column two will be one of these values: - * M : Modified : modified, added, deleted or missing files - * : blank / space : clean - * - : dash : no meaningful state, for empty repositories - - Column three will be one of these values: - * o : optional : optionally repository - * : blank / space : required repository - - * Detailed git or svn status of the repositories managed by %(prog)s: - - $ cd ${SRC_ROOT} - $ ./manage_externals/%(prog)s --status --verbose - -# Externals description file - - The externals description contains a list of the external - repositories that are used and their version control locations. The - file format is the standard ini/cfg configuration file format. Each - external is defined by a section containing the component name in - square brackets: - - * name (string) : component name, e.g. [cime], [cism], etc. - - Each section has the following keyword-value pairs: - - * required (boolean) : whether the component is a required checkout, - 'true' or 'false'. - - * local_path (string) : component path *relative* to where - %(prog)s is called. - - * protoctol (string) : version control protocol that is used to - manage the component. Valid values are 'git', 'svn', - 'externals_only'. - - Switching an external between different protocols is not - supported, e.g. from svn to git. To switch protocols, you need to - manually move the old working copy to a new location. - - Note: 'externals_only' will only process the external's own - external description file without trying to manage a repository - for the component. This is used for retrieving externals for - standalone components like cam and ctsm which also serve as - sub-components within a larger project. If the source root of the - externals_only component is the same as the main source root, then - the local path must be set to '.', the unix current working - directory, e. g. 'local_path = .' - - * repo_url (string) : URL for the repository location, examples: - * https://svn-ccsm-models.cgd.ucar.edu/glc - * git@github.com:esmci/cime.git - * /path/to/local/repository - * . - - NOTE: To operate on only the local clone and and ignore remote - repositories, set the url to '.' (the unix current path), - i.e. 'repo_url = .' . This can be used to checkout a local branch - instead of the upstream branch. - - If a repo url is determined to be a local path (not a network url) - then user expansion, e.g. ~/, and environment variable expansion, - e.g. $HOME or $REPO_ROOT, will be performed. - - Relative paths are difficult to get correct, especially for mixed - use repos. It is advised that local paths expand to absolute paths. - If relative paths are used, they should be relative to one level - above local_path. If local path is 'src/foo', the the relative url - should be relative to 'src'. - - * tag (string) : tag to checkout - - * hash (string) : the git hash to checkout. Only applies to git - repositories. - - * branch (string) : branch to checkout from the specified - repository. Specifying a branch on a remote repository means that - %(prog)s will checkout the version of the branch in the remote, - not the the version in the local repository (if it exists). - - Note: one and only one of tag, branch hash must be supplied. - - * externals (string) : used to make manage_externals aware of - sub-externals required by an external. This is a relative path to - the external's root directory. For example, if LIBX is often used - as a sub-external, it might have an externals file (for its - externals) called Externals_LIBX.cfg. To use libx as a standalone - checkout, it would have another file, Externals.cfg with the - following entry: - - [ libx ] - local_path = . - protocol = externals_only - externals = Externals_LIBX.cfg - required = True - - Now, %(prog)s will process Externals.cfg and also process - Externals_LIBX.cfg as if it was a sub-external. - - Note that by default, checkout_externals will clone an external's - submodules. As a special case, the entry, "externals = None", will - prevent this behavior. For more control over which externals are - checked out, create an externals file (and see the from_submodule - configuration entry below). - - * from_submodule (True / False) : used to pull the repo_url, local_path, - and hash properties for this external from the .gitmodules file in - this repository. Note that the section name (the entry in square - brackets) must match the name in the .gitmodules file. - If from_submodule is True, the protocol must be git and no repo_url, - local_path, hash, branch, or tag entries are allowed. - Default: False - - * sparse (string) : used to control a sparse checkout. This optional - entry should point to a filename (path relative to local_path) that - contains instructions on which repository paths to include (or - exclude) from the working tree. - See the "SPARSE CHECKOUT" section of https://git-scm.com/docs/git-read-tree - Default: sparse checkout is disabled - - * Lines beginning with '#' or ';' are comments and will be ignored. - -# Obtaining this tool, reporting issues, etc. - - The master repository for manage_externals is - https://github.com/ESMCI/manage_externals. Any issues with this tool - should be reported there. - -# Troubleshooting - -Operations performed by manage_externals utilities are explicit and -data driven. %(prog)s will always attempt to make the working copy -*exactly* match what is in the externals file when modifying the -working copy of a repository. - -If %(prog)s is not doing what you expected, double check the contents -of the externals description file or examine the output of -./manage_externals/%(prog)s --status - -''' - - parser = argparse.ArgumentParser( - description=description, epilog=epilog, - formatter_class=argparse.RawDescriptionHelpFormatter) - - # - # user options - # - parser.add_argument("components", nargs="*", - help="Specific component(s) to checkout. By default, " - "all required externals are checked out.") - - parser.add_argument('-e', '--externals', nargs='?', - default='Externals.cfg', - help='The externals description filename. ' - 'Default: %(default)s.') - - parser.add_argument('-x', '--exclude', nargs='*', - help='Component(s) listed in the externals file which should be ignored.') - - parser.add_argument('-o', '--optional', action='store_true', default=False, - help='By default only the required externals ' - 'are checked out. This flag will also checkout the ' - 'optional externals.') - - parser.add_argument('-S', '--status', action='store_true', default=False, - help='Output the status of the repositories managed by ' - '%(prog)s. By default only summary information ' - 'is provided. Use the verbose option to see details.') - - parser.add_argument('-v', '--verbose', action='count', default=0, - help='Output additional information to ' - 'the screen and log file. This flag can be ' - 'used up to two times, increasing the ' - 'verbosity level each time.') - - parser.add_argument('--svn-ignore-ancestry', action='store_true', default=False, - help='By default, subversion will abort if a component is ' - 'already checked out and there is no common ancestry with ' - 'the new URL. This flag passes the "--ignore-ancestry" flag ' - 'to the svn switch call. (This is not recommended unless ' - 'you are sure about what you are doing.)') - - # - # developer options - # - parser.add_argument('--backtrace', action='store_true', - help='DEVELOPER: show exception backtraces as extra ' - 'debugging output') - - parser.add_argument('-d', '--debug', action='store_true', default=False, - help='DEVELOPER: output additional debugging ' - 'information to the screen and log file.') - - logging_group = parser.add_mutually_exclusive_group() - - logging_group.add_argument('--logging', dest='do_logging', - action='store_true', - help='DEVELOPER: enable logging.') - logging_group.add_argument('--no-logging', dest='do_logging', - action='store_false', default=False, - help='DEVELOPER: disable logging ' - '(this is the default)') - - if args: - options = parser.parse_args(args) - else: - options = parser.parse_args() - return options - -def _dirty_local_repo_msg(program_name, config_file): - return """The external repositories labeled with 'M' above are not in a clean state. -The following are four options for how to proceed: -(1) Go into each external that is not in a clean state and issue either a 'git status' or - an 'svn status' command (depending on whether the external is managed by git or - svn). Either revert or commit your changes so that all externals are in a clean - state. (To revert changes in git, follow the instructions given when you run 'git - status'.) (Note, though, that it is okay to have untracked files in your working - directory.) Then rerun {program_name}. -(2) Alternatively, you do not have to rely on {program_name}. Instead, you can manually - update out-of-sync externals (labeled with 's' above) as described in the - configuration file {config_file}. (For example, run 'git fetch' and 'git checkout' - commands to checkout the appropriate tags for each external, as given in - {config_file}.) -(3) You can also use {program_name} to manage most, but not all externals: You can specify - one or more externals to ignore using the '-x' or '--exclude' argument to - {program_name}. Excluding externals labeled with 'M' will allow {program_name} to - update the other, non-excluded externals. -(4) As a last resort, if you are confident that there is no work that needs to be saved - from a given external, you can remove that external (via "rm -rf [directory]") and - then rerun the {program_name} tool. This option is mainly useful as a workaround for - issues with this tool (such as https://github.com/ESMCI/manage_externals/issues/157). -The external repositories labeled with '?' above are not under version -control using the expected protocol. If you are sure you want to switch -protocols, and you don't have any work you need to save from this -directory, then run "rm -rf [directory]" before rerunning the -{program_name} tool. -""".format(program_name=program_name, config_file=config_file) -# --------------------------------------------------------------------- -# -# main -# -# --------------------------------------------------------------------- -def main(args): - """ - Function to call when module is called from the command line. - Parse externals file and load required repositories or all repositories if - the --all option is passed. - - Returns a tuple (overall_status, tree_status). overall_status is 0 - on success, non-zero on failure. tree_status is a dict mapping local path - to ExternalStatus -- if no checkout is happening. If checkout is happening, tree_status - is None. - """ - if args.do_logging: - logging.basicConfig(filename=LOG_FILE_NAME, - format='%(levelname)s : %(asctime)s : %(message)s', - datefmt='%Y-%m-%d %H:%M:%S', - level=logging.DEBUG) - - program_name = os.path.basename(sys.argv[0]) - logging.info('Beginning of %s', program_name) - - load_all = False - if args.optional: - load_all = True - - root_dir = os.path.abspath(os.getcwd()) - model_data = read_externals_description_file(root_dir, args.externals) - ext_description = create_externals_description( - model_data, components=args.components, exclude=args.exclude) - - for comp in args.components: - if comp not in ext_description.keys(): - # Note we can't print out the list of found externals because - # they were filtered in create_externals_description above. - fatal_error( - "No component {} found in {}".format( - comp, args.externals)) - - source_tree = SourceTree(root_dir, ext_description, svn_ignore_ancestry=args.svn_ignore_ancestry) - if args.components: - components_str = 'specified components' - else: - components_str = 'required & optional components' - printlog('Checking local status of ' + components_str + ': ', end='') - tree_status = source_tree.status(print_progress=True) - printlog('') - - if args.status: - # user requested status-only - for comp in sorted(tree_status): - tree_status[comp].log_status_message(args.verbose) - else: - # checkout / update the external repositories. - safe_to_update = check_safe_to_update_repos(tree_status) - if not safe_to_update: - # print status - for comp in sorted(tree_status): - tree_status[comp].log_status_message(args.verbose) - # exit gracefully - printlog('-' * 70) - printlog(_dirty_local_repo_msg(program_name, args.externals)) - printlog('-' * 70) - else: - if not args.components: - source_tree.checkout(args.verbose, load_all) - for comp in args.components: - source_tree.checkout(args.verbose, load_all, load_comp=comp) - printlog('') - # New tree status is unknown, don't return anything. - tree_status = None - - logging.info('%s completed without exceptions.', program_name) - # NOTE(bja, 2017-11) tree status is used by the systems tests - return 0, tree_status diff --git a/manage_externals/manic/externals_description.py b/manage_externals/manic/externals_description.py deleted file mode 100644 index 546e7fdcb4..0000000000 --- a/manage_externals/manic/externals_description.py +++ /dev/null @@ -1,830 +0,0 @@ -#!/usr/bin/env python3 - -"""Model description - -Model description is the representation of the various externals -included in the model. It processes in input data structure, and -converts it into a standard interface that is used by the rest of the -system. - -To maintain backward compatibility, externals description files should -follow semantic versioning rules, http://semver.org/ - - - -""" -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import logging -import os -import os.path -import re - -# ConfigParser in python2 was renamed to configparser in python3. -# In python2, ConfigParser returns byte strings, str, instead of unicode. -# We need unicode to be compatible with xml and json parser and python3. -try: - # python2 - from ConfigParser import SafeConfigParser as config_parser - from ConfigParser import MissingSectionHeaderError - from ConfigParser import NoSectionError, NoOptionError - - USE_PYTHON2 = True - - def config_string_cleaner(text): - """convert strings into unicode - """ - return text.decode('utf-8') -except ImportError: - # python3 - from configparser import ConfigParser as config_parser - from configparser import MissingSectionHeaderError - from configparser import NoSectionError, NoOptionError - - USE_PYTHON2 = False - - def config_string_cleaner(text): - """Python3 already uses unicode strings, so just return the string - without modification. - - """ - return text - -from .utils import printlog, fatal_error, str_to_bool, expand_local_url -from .utils import execute_subprocess -from .global_constants import EMPTY_STR, PPRINTER, VERSION_SEPERATOR - -# -# Globals -# -DESCRIPTION_SECTION = 'externals_description' -VERSION_ITEM = 'schema_version' - - -def read_externals_description_file(root_dir, file_name): - """Read a file containing an externals description and - create its internal representation. - - """ - root_dir = os.path.abspath(root_dir) - msg = 'In directory : {0}'.format(root_dir) - logging.info(msg) - printlog('Processing externals description file : {0} ({1})'.format(file_name, - root_dir)) - - file_path = os.path.join(root_dir, file_name) - if not os.path.exists(file_name): - if file_name.lower() == "none": - msg = ('INTERNAL ERROR: Attempt to read externals file ' - 'from {0} when not configured'.format(file_path)) - else: - msg = ('ERROR: Model description file, "{0}", does not ' - 'exist at path:\n {1}\nDid you run from the root of ' - 'the source tree?'.format(file_name, file_path)) - - fatal_error(msg) - - externals_description = None - if file_name == ExternalsDescription.GIT_SUBMODULES_FILENAME: - externals_description = _read_gitmodules_file(root_dir, file_name) - else: - try: - config = config_parser() - config.read(file_path) - externals_description = config - except MissingSectionHeaderError: - # not a cfg file - pass - - if externals_description is None: - msg = 'Unknown file format!' - fatal_error(msg) - - return externals_description - -class LstripReader(object): - "LstripReader formats .gitmodules files to be acceptable for configparser" - def __init__(self, filename): - with open(filename, 'r') as infile: - lines = infile.readlines() - self._lines = list() - self._num_lines = len(lines) - self._index = 0 - for line in lines: - self._lines.append(line.lstrip()) - - def readlines(self): - """Return all the lines from this object's file""" - return self._lines - - def readline(self, size=-1): - """Format and return the next line or raise StopIteration""" - try: - line = self.next() - except StopIteration: - line = '' - - if (size > 0) and (len(line) < size): - return line[0:size] - - return line - - def __iter__(self): - """Begin an iteration""" - self._index = 0 - return self - - def next(self): - """Return the next line or raise StopIteration""" - if self._index >= self._num_lines: - raise StopIteration - - self._index = self._index + 1 - return self._lines[self._index - 1] - - def __next__(self): - return self.next() - -def git_submodule_status(repo_dir): - """Run the git submodule status command to obtain submodule hashes. - """ - # This function is here instead of GitRepository to avoid a dependency loop - cmd = 'git -C {repo_dir} submodule status'.format( - repo_dir=repo_dir).split() - git_output = execute_subprocess(cmd, output_to_caller=True) - submodules = {} - submods = git_output.split('\n') - for submod in submods: - if submod: - status = submod[0] - items = submod[1:].split(' ') - if len(items) > 2: - tag = items[2] - else: - tag = None - - submodules[items[1]] = {'hash':items[0], 'status':status, 'tag':tag} - - return submodules - -def parse_submodules_desc_section(section_items, file_path): - """Find the path and url for this submodule description""" - path = None - url = None - for item in section_items: - name = item[0].strip().lower() - if name == 'path': - path = item[1].strip() - elif name == 'url': - url = item[1].strip() - elif name == 'branch': - # We do not care about branch since we have a hash - silently ignore - pass - else: - msg = 'WARNING: Ignoring unknown {} property, in {}' - msg = msg.format(item[0], file_path) # fool pylint - logging.warning(msg) - - return path, url - -def _read_gitmodules_file(root_dir, file_name): - # pylint: disable=deprecated-method - # Disabling this check because the method is only used for python2 - # pylint: disable=too-many-locals - # pylint: disable=too-many-branches - # pylint: disable=too-many-statements - """Read a .gitmodules file and convert it to be compatible with an - externals description. - """ - root_dir = os.path.abspath(root_dir) - msg = 'In directory : {0}'.format(root_dir) - logging.info(msg) - - file_path = os.path.join(root_dir, file_name) - if not os.path.exists(file_name): - msg = ('ERROR: submodules description file, "{0}", does not ' - 'exist in dir:\n {1}'.format(file_name, root_dir)) - fatal_error(msg) - - submodules_description = None - externals_description = None - try: - config = config_parser() - if USE_PYTHON2: - config.readfp(LstripReader(file_path), filename=file_name) - else: - config.read_file(LstripReader(file_path), source=file_name) - - submodules_description = config - except MissingSectionHeaderError: - # not a cfg file - pass - - if submodules_description is None: - msg = 'Unknown file format!' - fatal_error(msg) - else: - # Convert the submodules description to an externals description - externals_description = config_parser() - # We need to grab all the commit hashes for this repo - submods = git_submodule_status(root_dir) - for section in submodules_description.sections(): - if section[0:9] == 'submodule': - sec_name = section[9:].strip(' "') - externals_description.add_section(sec_name) - section_items = submodules_description.items(section) - path, url = parse_submodules_desc_section(section_items, - file_path) - - if path is None: - msg = 'Submodule {} missing path'.format(sec_name) - fatal_error(msg) - - if url is None: - msg = 'Submodule {} missing url'.format(sec_name) - fatal_error(msg) - - externals_description.set(sec_name, - ExternalsDescription.PATH, path) - externals_description.set(sec_name, - ExternalsDescription.PROTOCOL, 'git') - externals_description.set(sec_name, - ExternalsDescription.REPO_URL, url) - externals_description.set(sec_name, - ExternalsDescription.REQUIRED, 'True') - if sec_name in submods: - submod_name = sec_name - else: - # The section name does not have to match the path - submod_name = path - - if submod_name in submods: - git_hash = submods[submod_name]['hash'] - externals_description.set(sec_name, - ExternalsDescription.HASH, - git_hash) - else: - emsg = "submodule status has no section, '{}'" - emsg += "\nCheck section names in externals config file" - fatal_error(emsg.format(submod_name)) - - # Required items - externals_description.add_section(DESCRIPTION_SECTION) - externals_description.set(DESCRIPTION_SECTION, VERSION_ITEM, '1.0.0') - - return externals_description - -def create_externals_description( - model_data, model_format='cfg', components=None, exclude=None, parent_repo=None): - """Create the a externals description object from the provided data - - components: list of component names to include, None to include all. If a - name isn't found, it is silently omitted from the return value. - exclude: list of component names to skip. - """ - externals_description = None - if model_format == 'dict': - externals_description = ExternalsDescriptionDict( - model_data, components=components, exclude=exclude) - elif model_format == 'cfg': - major, _, _ = get_cfg_schema_version(model_data) - if major == 1: - externals_description = ExternalsDescriptionConfigV1( - model_data, components=components, exclude=exclude, parent_repo=parent_repo) - else: - msg = ('Externals description file has unsupported schema ' - 'version "{0}".'.format(major)) - fatal_error(msg) - else: - msg = 'Unknown model data format "{0}"'.format(model_format) - fatal_error(msg) - return externals_description - - -def get_cfg_schema_version(model_cfg): - """Extract the major, minor, patch version of the config file schema - - Params: - model_cfg - config parser object containing the externas description data - - Returns: - major = integer major version - minor = integer minor version - patch = integer patch version - """ - semver_str = '' - try: - semver_str = model_cfg.get(DESCRIPTION_SECTION, VERSION_ITEM) - except (NoSectionError, NoOptionError): - msg = ('externals description file must have the required ' - 'section: "{0}" and item "{1}"'.format(DESCRIPTION_SECTION, - VERSION_ITEM)) - fatal_error(msg) - - # NOTE(bja, 2017-11) Assume we don't care about the - # build/pre-release metadata for now! - version_list = re.split(r'[-+]', semver_str) - version_str = version_list[0] - version = version_str.split(VERSION_SEPERATOR) - try: - major = int(version[0].strip()) - minor = int(version[1].strip()) - patch = int(version[2].strip()) - except ValueError: - msg = ('Config file schema version must have integer digits for ' - 'major, minor and patch versions. ' - 'Received "{0}"'.format(version_str)) - fatal_error(msg) - return major, minor, patch - - -class ExternalsDescription(dict): - """Base externals description class that is independent of the user input - format. Different input formats can all be converted to this - representation to provide a consistent represtentation for the - rest of the objects in the system. - - NOTE(bja, 2018-03): do NOT define _schema_major etc at the class - level in the base class. The nested/recursive nature of externals - means different schema versions may be present in a single run! - - All inheriting classes must overwrite: - self._schema_major and self._input_major - self._schema_minor and self._input_minor - self._schema_patch and self._input_patch - - where _schema_x is the supported schema, _input_x is the user - input value. - - """ - # keywords defining the interface into the externals description data; these - # are brought together by the schema below. - EXTERNALS = 'externals' # path to externals file. - BRANCH = 'branch' - SUBMODULE = 'from_submodule' - HASH = 'hash' - NAME = 'name' - PATH = 'local_path' - PROTOCOL = 'protocol' - REPO = 'repo' - REPO_URL = 'repo_url' - REQUIRED = 'required' - TAG = 'tag' - SPARSE = 'sparse' - - PROTOCOL_EXTERNALS_ONLY = 'externals_only' - PROTOCOL_GIT = 'git' - PROTOCOL_SVN = 'svn' - GIT_SUBMODULES_FILENAME = '.gitmodules' - KNOWN_PRROTOCOLS = [PROTOCOL_GIT, PROTOCOL_SVN, PROTOCOL_EXTERNALS_ONLY] - - # v1 xml keywords - _V1_TREE_PATH = 'TREE_PATH' - _V1_ROOT = 'ROOT' - _V1_TAG = 'TAG' - _V1_BRANCH = 'BRANCH' - _V1_REQ_SOURCE = 'REQ_SOURCE' - - # Dictionary keys are component names. The corresponding values are laid out - # according to this schema. - _source_schema = {REQUIRED: True, - PATH: 'string', - EXTERNALS: 'string', - SUBMODULE : True, - REPO: {PROTOCOL: 'string', - REPO_URL: 'string', - TAG: 'string', - BRANCH: 'string', - HASH: 'string', - SPARSE: 'string', - } - } - - def __init__(self, parent_repo=None): - """Convert the xml into a standardized dict that can be used to - construct the source objects - - """ - dict.__init__(self) - - self._schema_major = None - self._schema_minor = None - self._schema_patch = None - self._input_major = None - self._input_minor = None - self._input_patch = None - self._parent_repo = parent_repo - - def _verify_schema_version(self): - """Use semantic versioning rules to verify we can process this schema. - - """ - known = '{0}.{1}.{2}'.format(self._schema_major, - self._schema_minor, - self._schema_patch) - received = '{0}.{1}.{2}'.format(self._input_major, - self._input_minor, - self._input_patch) - - if self._input_major != self._schema_major: - # should never get here, the factory should handle this correctly! - msg = ('DEV_ERROR: version "{0}" parser received ' - 'version "{1}" input.'.format(known, received)) - fatal_error(msg) - - if self._input_minor > self._schema_minor: - msg = ('Incompatible schema version:\n' - ' User supplied schema version "{0}" is too new."\n' - ' Can only process version "{1}" files and ' - 'older.'.format(received, known)) - fatal_error(msg) - - if self._input_patch > self._schema_patch: - # NOTE(bja, 2018-03) ignoring for now... Not clear what - # conditions the test is needed. - pass - - def _check_user_input(self): - """Run a series of checks to attempt to validate the user input and - detect errors as soon as possible. - - NOTE(bja, 2018-03) These checks are called *after* the file is - read. That means the schema check can not occur here. - - Note: the order is important. check_optional will create - optional with null data. run check_data first to ensure - required data was provided correctly by the user. - - """ - self._check_data() - self._check_optional() - self._validate() - - def _check_data(self): - # pylint: disable=too-many-branches,too-many-statements - """Check user supplied data is valid where possible. - """ - for ext_name in self.keys(): - if (self[ext_name][self.REPO][self.PROTOCOL] - not in self.KNOWN_PRROTOCOLS): - msg = 'Unknown repository protocol "{0}" in "{1}".'.format( - self[ext_name][self.REPO][self.PROTOCOL], ext_name) - fatal_error(msg) - - if (self[ext_name][self.REPO][self.PROTOCOL] == - self.PROTOCOL_SVN): - if self.HASH in self[ext_name][self.REPO]: - msg = ('In repo description for "{0}". svn repositories ' - 'may not include the "hash" keyword.'.format( - ext_name)) - fatal_error(msg) - - if ((self[ext_name][self.REPO][self.PROTOCOL] != self.PROTOCOL_GIT) - and (self.SUBMODULE in self[ext_name])): - msg = ('self.SUBMODULE is only supported with {0} protocol, ' - '"{1}" is defined as an {2} repository') - fatal_error(msg.format(self.PROTOCOL_GIT, ext_name, - self[ext_name][self.REPO][self.PROTOCOL])) - - if (self[ext_name][self.REPO][self.PROTOCOL] != - self.PROTOCOL_EXTERNALS_ONLY): - ref_count = 0 - found_refs = '' - if self.TAG in self[ext_name][self.REPO]: - ref_count += 1 - found_refs = '"{0} = {1}", {2}'.format( - self.TAG, self[ext_name][self.REPO][self.TAG], - found_refs) - if self.BRANCH in self[ext_name][self.REPO]: - ref_count += 1 - found_refs = '"{0} = {1}", {2}'.format( - self.BRANCH, self[ext_name][self.REPO][self.BRANCH], - found_refs) - if self.HASH in self[ext_name][self.REPO]: - ref_count += 1 - found_refs = '"{0} = {1}", {2}'.format( - self.HASH, self[ext_name][self.REPO][self.HASH], - found_refs) - if (self.SUBMODULE in self[ext_name] and - self[ext_name][self.SUBMODULE]): - ref_count += 1 - found_refs = '"{0} = {1}", {2}'.format( - self.SUBMODULE, - self[ext_name][self.SUBMODULE], found_refs) - - if ref_count > 1: - msg = 'Model description is over specified! ' - if self.SUBMODULE in self[ext_name]: - msg += ('from_submodule is not compatible with ' - '"tag", "branch", or "hash" ') - else: - msg += (' Only one of "tag", "branch", or "hash" ' - 'may be specified ') - - msg += 'for repo description of "{0}".'.format(ext_name) - msg = '{0}\nFound: {1}'.format(msg, found_refs) - fatal_error(msg) - elif ref_count < 1: - msg = ('Model description is under specified! One of ' - '"tag", "branch", or "hash" must be specified for ' - 'repo description of "{0}"'.format(ext_name)) - fatal_error(msg) - - if (self.REPO_URL not in self[ext_name][self.REPO] and - (self.SUBMODULE not in self[ext_name] or - not self[ext_name][self.SUBMODULE])): - msg = ('Model description is under specified! Must have ' - '"repo_url" in repo ' - 'description for "{0}"'.format(ext_name)) - fatal_error(msg) - - if (self.SUBMODULE in self[ext_name] and - self[ext_name][self.SUBMODULE]): - if self.REPO_URL in self[ext_name][self.REPO]: - msg = ('Model description is over specified! ' - 'from_submodule keyword is not compatible ' - 'with {0} keyword for'.format(self.REPO_URL)) - msg = '{0} repo description of "{1}"'.format(msg, - ext_name) - fatal_error(msg) - - if self.PATH in self[ext_name]: - msg = ('Model description is over specified! ' - 'from_submodule keyword is not compatible with ' - '{0} keyword for'.format(self.PATH)) - msg = '{0} repo description of "{1}"'.format(msg, - ext_name) - fatal_error(msg) - - if self.REPO_URL in self[ext_name][self.REPO]: - url = expand_local_url( - self[ext_name][self.REPO][self.REPO_URL], ext_name) - self[ext_name][self.REPO][self.REPO_URL] = url - - def _check_optional(self): - # pylint: disable=too-many-branches - """Some fields like externals, repo:tag repo:branch are - (conditionally) optional. We don't want the user to be - required to enter them in every externals description file, but - still want to validate the input. Check conditions and add - default values if appropriate. - - """ - submod_desc = None # Only load submodules info once - for field in self: - # truely optional - if self.EXTERNALS not in self[field]: - self[field][self.EXTERNALS] = EMPTY_STR - - # git and svn repos must tags and branches for validation purposes. - if self.TAG not in self[field][self.REPO]: - self[field][self.REPO][self.TAG] = EMPTY_STR - if self.BRANCH not in self[field][self.REPO]: - self[field][self.REPO][self.BRANCH] = EMPTY_STR - if self.HASH not in self[field][self.REPO]: - self[field][self.REPO][self.HASH] = EMPTY_STR - if self.REPO_URL not in self[field][self.REPO]: - self[field][self.REPO][self.REPO_URL] = EMPTY_STR - if self.SPARSE not in self[field][self.REPO]: - self[field][self.REPO][self.SPARSE] = EMPTY_STR - - # from_submodule has a complex relationship with other fields - if self.SUBMODULE in self[field]: - # User wants to use submodule information, is it available? - if self._parent_repo is None: - # No parent == no submodule information - PPRINTER.pprint(self[field]) - msg = 'No parent submodule for "{0}"'.format(field) - fatal_error(msg) - elif self._parent_repo.protocol() != self.PROTOCOL_GIT: - PPRINTER.pprint(self[field]) - msg = 'Parent protocol, "{0}", does not support submodules' - fatal_error(msg.format(self._parent_repo.protocol())) - else: - args = self._repo_config_from_submodule(field, submod_desc) - repo_url, repo_path, ref_hash, submod_desc = args - - if repo_url is None: - msg = ('Cannot checkout "{0}" as a submodule, ' - 'repo not found in {1} file') - fatal_error(msg.format(field, - self.GIT_SUBMODULES_FILENAME)) - # Fill in submodule fields - self[field][self.REPO][self.REPO_URL] = repo_url - self[field][self.REPO][self.HASH] = ref_hash - self[field][self.PATH] = repo_path - - if self[field][self.SUBMODULE]: - # We should get everything from the parent submodule - # configuration. - pass - # No else (from _submodule = False is the default) - else: - # Add the default value (not using submodule information) - self[field][self.SUBMODULE] = False - - def _repo_config_from_submodule(self, field, submod_desc): - """Find the external config information for a repository from - its submodule configuration information. - """ - if submod_desc is None: - repo_path = os.getcwd() # Is this always correct? - submod_file = self._parent_repo.submodules_file(repo_path=repo_path) - if submod_file is None: - msg = ('Cannot checkout "{0}" from submodule information\n' - ' Parent repo, "{1}" does not have submodules') - fatal_error(msg.format(field, self._parent_repo.name())) - - printlog( - 'Processing submodules description file : {0} ({1})'.format( - submod_file, repo_path)) - submod_model_data= _read_gitmodules_file(repo_path, submod_file) - submod_desc = create_externals_description(submod_model_data) - - # Can we find our external? - repo_url = None - repo_path = None - ref_hash = None - for ext_field in submod_desc: - if field == ext_field: - ext = submod_desc[ext_field] - repo_url = ext[self.REPO][self.REPO_URL] - repo_path = ext[self.PATH] - ref_hash = ext[self.REPO][self.HASH] - break - - return repo_url, repo_path, ref_hash, submod_desc - - def _validate(self): - """Validate that the parsed externals description contains all necessary - fields. - - """ - def print_compare_difference(data_a, data_b, loc_a, loc_b): - """Look through the data structures and print the differences. - - """ - for item in data_a: - if item in data_b: - if not isinstance(data_b[item], type(data_a[item])): - printlog(" {item}: {loc} = {val} ({val_type})".format( - item=item, loc=loc_a, val=data_a[item], - val_type=type(data_a[item]))) - printlog(" {item} {loc} = {val} ({val_type})".format( - item=' ' * len(item), loc=loc_b, val=data_b[item], - val_type=type(data_b[item]))) - else: - printlog(" {item}: {loc} = {val} ({val_type})".format( - item=item, loc=loc_a, val=data_a[item], - val_type=type(data_a[item]))) - printlog(" {item} {loc} missing".format( - item=' ' * len(item), loc=loc_b)) - - def validate_data_struct(schema, data): - """Compare a data structure against a schema and validate all required - fields are present. - - """ - is_valid = False - in_ref = True - valid = True - if isinstance(schema, dict) and isinstance(data, dict): - # Both are dicts, recursively verify that all fields - # in schema are present in the data. - for key in schema: - in_ref = in_ref and (key in data) - if in_ref: - valid = valid and ( - validate_data_struct(schema[key], data[key])) - - is_valid = in_ref and valid - else: - # non-recursive structure. verify data and schema have - # the same type. - is_valid = isinstance(data, type(schema)) - - if not is_valid: - printlog(" Unmatched schema and input:") - if isinstance(schema, dict): - print_compare_difference(schema, data, 'schema', 'input') - print_compare_difference(data, schema, 'input', 'schema') - else: - printlog(" schema = {0} ({1})".format( - schema, type(schema))) - printlog(" input = {0} ({1})".format(data, type(data))) - - return is_valid - - for field in self: - valid = validate_data_struct(self._source_schema, self[field]) - if not valid: - PPRINTER.pprint(self._source_schema) - PPRINTER.pprint(self[field]) - msg = 'ERROR: source for "{0}" did not validate'.format(field) - fatal_error(msg) - - -class ExternalsDescriptionDict(ExternalsDescription): - """Create a externals description object from a dictionary using the API - representations. Primarily used to simplify creating model - description files for unit testing. - - """ - - def __init__(self, model_data, components=None, exclude=None): - """Parse a native dictionary into a externals description. - """ - ExternalsDescription.__init__(self) - self._schema_major = 1 - self._schema_minor = 0 - self._schema_patch = 0 - self._input_major = 1 - self._input_minor = 0 - self._input_patch = 0 - self._verify_schema_version() - if components: - for key in list(model_data.keys()): - if key not in components: - del model_data[key] - - if exclude: - for key in list(model_data.keys()): - if key in exclude: - del model_data[key] - - self.update(model_data) - self._check_user_input() - - -class ExternalsDescriptionConfigV1(ExternalsDescription): - """Create a externals description object from a config_parser object, - schema version 1. - - """ - - def __init__(self, model_data, components=None, exclude=None, parent_repo=None): - """Convert the config data into a standardized dict that can be used to - construct the source objects - - components: list of component names to include, None to include all. - exclude: list of component names to skip. - """ - ExternalsDescription.__init__(self, parent_repo=parent_repo) - self._schema_major = 1 - self._schema_minor = 1 - self._schema_patch = 0 - self._input_major, self._input_minor, self._input_patch = \ - get_cfg_schema_version(model_data) - self._verify_schema_version() - self._remove_metadata(model_data) - self._parse_cfg(model_data, components=components, exclude=exclude) - self._check_user_input() - - @staticmethod - def _remove_metadata(model_data): - """Remove the metadata section from the model configuration file so - that it is simpler to look through the file and construct the - externals description. - - """ - model_data.remove_section(DESCRIPTION_SECTION) - - def _parse_cfg(self, cfg_data, components=None, exclude=None): - """Parse a config_parser object into a externals description. - - components: list of component names to include, None to include all. - exclude: list of component names to skip. - """ - def list_to_dict(input_list, convert_to_lower_case=True): - """Convert a list of key-value pairs into a dictionary. - """ - output_dict = {} - for item in input_list: - key = config_string_cleaner(item[0].strip()) - value = config_string_cleaner(item[1].strip()) - if convert_to_lower_case: - key = key.lower() - output_dict[key] = value - return output_dict - - for section in cfg_data.sections(): - name = config_string_cleaner(section.lower().strip()) - if (components and name not in components) or (exclude and name in exclude): - continue - self[name] = {} - self[name].update(list_to_dict(cfg_data.items(section))) - self[name][self.REPO] = {} - loop_keys = self[name].copy().keys() - for item in loop_keys: - if item in self._source_schema: - if isinstance(self._source_schema[item], bool): - self[name][item] = str_to_bool(self[name][item]) - elif item in self._source_schema[self.REPO]: - self[name][self.REPO][item] = self[name][item] - del self[name][item] - else: - msg = ('Invalid input: "{sect}" contains unknown ' - 'item "{item}".'.format(sect=name, item=item)) - fatal_error(msg) diff --git a/manage_externals/manic/externals_status.py b/manage_externals/manic/externals_status.py deleted file mode 100644 index 6bc29e9732..0000000000 --- a/manage_externals/manic/externals_status.py +++ /dev/null @@ -1,164 +0,0 @@ -"""ExternalStatus - -Class to store status and state information about repositories and -create a string representation. - -""" -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -from .global_constants import EMPTY_STR -from .utils import printlog, indent_string -from .global_constants import VERBOSITY_VERBOSE, VERBOSITY_DUMP - - -class ExternalStatus(object): - """Class to represent the status of a given source repository or tree. - - Individual repositories determine their own status in the - Repository objects. This object is just resposible for storing the - information and passing it up to a higher level for reporting or - global decisions. - - There are two states of concern: - - * If the repository is in-sync with the externals description file. - - * If the repostiory working copy is clean and there are no pending - transactions (e.g. add, remove, rename, untracked files). - - """ - # sync_state and clean_state can be one of the following: - DEFAULT = '-' # not set yet (sync_state). clean_state can be this if sync_state is EMPTY. - UNKNOWN = '?' - EMPTY = 'e' - MODEL_MODIFIED = 's' # repo version != externals (sync_state only) - DIRTY = 'M' # repo is dirty (clean_state only) - STATUS_OK = ' ' # repo is clean (clean_state) or matches externals version (sync_state) - STATUS_ERROR = '!' - - # source_type can be one of the following: - OPTIONAL = 'o' - STANDALONE = 's' - MANAGED = ' ' - - def __init__(self): - self.sync_state = self.DEFAULT - self.clean_state = self.DEFAULT - self.source_type = self.DEFAULT - self.path = EMPTY_STR - self.current_version = EMPTY_STR - self.expected_version = EMPTY_STR - self.status_output = EMPTY_STR - - def log_status_message(self, verbosity): - """Write status message to the screen and log file - """ - printlog(self._default_status_message()) - if verbosity >= VERBOSITY_VERBOSE: - printlog(self._verbose_status_message()) - if verbosity >= VERBOSITY_DUMP: - printlog(self._dump_status_message()) - - def __repr__(self): - return self._default_status_message() - - def _default_status_message(self): - """Return the default terse status message string - """ - return '{sync}{clean}{src_type} {path}'.format( - sync=self.sync_state, clean=self.clean_state, - src_type=self.source_type, path=self.path) - - def _verbose_status_message(self): - """Return the verbose status message string - """ - clean_str = self.DEFAULT - if self.clean_state == self.STATUS_OK: - clean_str = 'clean sandbox' - elif self.clean_state == self.DIRTY: - clean_str = 'modified sandbox' - - sync_str = 'on {0}'.format(self.current_version) - if self.sync_state != self.STATUS_OK: - sync_str = '{current} --> {expected}'.format( - current=self.current_version, expected=self.expected_version) - return ' {clean}, {sync}'.format(clean=clean_str, sync=sync_str) - - def _dump_status_message(self): - """Return the dump status message string - """ - return indent_string(self.status_output, 12) - - def safe_to_update(self): - """Report if it is safe to update a repository. Safe is defined as: - - * If a repository is empty, it is safe to update. - - * If a repository exists and has a clean working copy state - with no pending transactions. - - """ - safe_to_update = False - repo_exists = self.exists() - if not repo_exists: - safe_to_update = True - else: - # If the repo exists, it must be in ok or modified - # sync_state. Any other sync_state at this point - # represents a logic error that should have been handled - # before now! - sync_safe = ((self.sync_state == ExternalStatus.STATUS_OK) or - (self.sync_state == ExternalStatus.MODEL_MODIFIED)) - if sync_safe: - # The clean_state must be STATUS_OK to update. Otherwise we - # are dirty or there was a missed error previously. - if self.clean_state == ExternalStatus.STATUS_OK: - safe_to_update = True - return safe_to_update - - def exists(self): - """Determine if the repo exists. This is indicated by: - - * sync_state is not EMPTY - - * if the sync_state is empty, then the valid states for - clean_state are default, empty or unknown. Anything else - and there was probably an internal logic error. - - NOTE(bja, 2017-10) For the moment we are considering a - sync_state of default or unknown to require user intervention, - but we may want to relax this convention. This is probably a - result of a network error or internal logic error but more - testing is needed. - - """ - is_empty = (self.sync_state == ExternalStatus.EMPTY) - clean_valid = ((self.clean_state == ExternalStatus.DEFAULT) or - (self.clean_state == ExternalStatus.EMPTY) or - (self.clean_state == ExternalStatus.UNKNOWN)) - - if is_empty and clean_valid: - exists = False - else: - exists = True - return exists - - -def check_safe_to_update_repos(tree_status): - """Check if *ALL* repositories are in a safe state to update. We don't - want to do a partial update of the repositories then die, leaving - the model in an inconsistent state. - - Note: if there is an update to do, the repositories will by - definiation be out of synce with the externals description, so we - can't use that as criteria for updating. - - """ - safe_to_update = True - for comp in tree_status: - stat = tree_status[comp] - safe_to_update &= stat.safe_to_update() - - return safe_to_update diff --git a/manage_externals/manic/global_constants.py b/manage_externals/manic/global_constants.py deleted file mode 100644 index 0e91cffc90..0000000000 --- a/manage_externals/manic/global_constants.py +++ /dev/null @@ -1,18 +0,0 @@ -"""Globals shared across modules -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import pprint - -EMPTY_STR = '' -LOCAL_PATH_INDICATOR = '.' -VERSION_SEPERATOR = '.' -LOG_FILE_NAME = 'manage_externals.log' -PPRINTER = pprint.PrettyPrinter(indent=4) - -VERBOSITY_DEFAULT = 0 -VERBOSITY_VERBOSE = 1 -VERBOSITY_DUMP = 2 diff --git a/manage_externals/manic/repository.py b/manage_externals/manic/repository.py deleted file mode 100644 index ea4230fb7b..0000000000 --- a/manage_externals/manic/repository.py +++ /dev/null @@ -1,98 +0,0 @@ -"""Base class representation of a repository -""" - -from .externals_description import ExternalsDescription -from .utils import fatal_error -from .global_constants import EMPTY_STR - - -class Repository(object): - """ - Class to represent and operate on a repository description. - """ - - def __init__(self, component_name, repo): - """ - Parse repo externals description - """ - self._name = component_name - self._protocol = repo[ExternalsDescription.PROTOCOL] - self._tag = repo[ExternalsDescription.TAG] - self._branch = repo[ExternalsDescription.BRANCH] - self._hash = repo[ExternalsDescription.HASH] - self._url = repo[ExternalsDescription.REPO_URL] - self._sparse = repo[ExternalsDescription.SPARSE] - - if self._url is EMPTY_STR: - fatal_error('repo must have a URL') - - if ((self._tag is EMPTY_STR) and (self._branch is EMPTY_STR) and - (self._hash is EMPTY_STR)): - fatal_error('{0} repo must have a branch, tag or hash element') - - ref_count = 0 - if self._tag is not EMPTY_STR: - ref_count += 1 - if self._branch is not EMPTY_STR: - ref_count += 1 - if self._hash is not EMPTY_STR: - ref_count += 1 - if ref_count != 1: - fatal_error('repo {0} must have exactly one of ' - 'tag, branch or hash.'.format(self._name)) - - def checkout(self, base_dir_path, repo_dir_name, verbosity, recursive): # pylint: disable=unused-argument - """ - If the repo destination directory exists, ensure it is correct (from - correct URL, correct branch or tag), and possibly update the source. - If the repo destination directory does not exist, checkout the correce - branch or tag. - NB: is include as an argument for compatibility with - git functionality (repository_git.py) - """ - msg = ('DEV_ERROR: checkout method must be implemented in all ' - 'repository classes! {0}'.format(self.__class__.__name__)) - fatal_error(msg) - - def status(self, stat, repo_dir_path): # pylint: disable=unused-argument - """Report the status of the repo - - """ - msg = ('DEV_ERROR: status method must be implemented in all ' - 'repository classes! {0}'.format(self.__class__.__name__)) - fatal_error(msg) - - def submodules_file(self, repo_path=None): - # pylint: disable=no-self-use,unused-argument - """Stub for use by non-git VC systems""" - return None - - def url(self): - """Public access of repo url. - """ - return self._url - - def tag(self): - """Public access of repo tag - """ - return self._tag - - def branch(self): - """Public access of repo branch. - """ - return self._branch - - def hash(self): - """Public access of repo hash. - """ - return self._hash - - def name(self): - """Public access of repo name. - """ - return self._name - - def protocol(self): - """Public access of repo protocol. - """ - return self._protocol diff --git a/manage_externals/manic/repository_factory.py b/manage_externals/manic/repository_factory.py deleted file mode 100644 index 18c73ffc4b..0000000000 --- a/manage_externals/manic/repository_factory.py +++ /dev/null @@ -1,30 +0,0 @@ -"""Factory for creating and initializing the appropriate repository class -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -from .repository_git import GitRepository -from .repository_svn import SvnRepository -from .externals_description import ExternalsDescription -from .utils import fatal_error - - -def create_repository(component_name, repo_info, svn_ignore_ancestry=False): - """Determine what type of repository we have, i.e. git or svn, and - create the appropriate object. - - Can return None (e.g. if protocol is 'externals_only'). - """ - protocol = repo_info[ExternalsDescription.PROTOCOL].lower() - if protocol == 'git': - repo = GitRepository(component_name, repo_info) - elif protocol == 'svn': - repo = SvnRepository(component_name, repo_info, ignore_ancestry=svn_ignore_ancestry) - elif protocol == 'externals_only': - repo = None - else: - msg = 'Unknown repo protocol "{0}"'.format(protocol) - fatal_error(msg) - return repo diff --git a/manage_externals/manic/repository_git.py b/manage_externals/manic/repository_git.py deleted file mode 100644 index aab1a468a8..0000000000 --- a/manage_externals/manic/repository_git.py +++ /dev/null @@ -1,859 +0,0 @@ -"""Class for interacting with git repositories -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import copy -import os -import sys - -from .global_constants import EMPTY_STR, LOCAL_PATH_INDICATOR -from .global_constants import VERBOSITY_VERBOSE -from .repository import Repository -from .externals_status import ExternalStatus -from .externals_description import ExternalsDescription, git_submodule_status -from .utils import expand_local_url, split_remote_url, is_remote_url -from .utils import fatal_error, printlog -from .utils import execute_subprocess - - -class GitRepository(Repository): - """Class to represent and operate on a repository description. - - For testing purpose, all system calls to git should: - - * be isolated in separate functions with no application logic - * of the form: - - cmd = 'git -C {dirname} ...'.format(dirname=dirname).split() - - value = execute_subprocess(cmd, output_to_caller={T|F}, - status_to_caller={T|F}) - - return value - * be static methods (not rely on self) - * name as _git_subcommand_args(user_args) - - This convention allows easy unit testing of the repository logic - by mocking the specific calls to return predefined results. - - """ - - def __init__(self, component_name, repo): - """ - repo: ExternalsDescription. - """ - Repository.__init__(self, component_name, repo) - self._gitmodules = None - self._submods = None - - # ---------------------------------------------------------------- - # - # Public API, defined by Repository - # - # ---------------------------------------------------------------- - def checkout(self, base_dir_path, repo_dir_name, verbosity, recursive): - """ - If the repo destination directory exists, ensure it is correct (from - correct URL, correct branch or tag), and possibly update the source. - If the repo destination directory does not exist, checkout the correct - branch or tag. - """ - repo_dir_path = os.path.join(base_dir_path, repo_dir_name) - repo_dir_exists = os.path.exists(repo_dir_path) - if (repo_dir_exists and not os.listdir( - repo_dir_path)) or not repo_dir_exists: - self._clone_repo(base_dir_path, repo_dir_name, verbosity) - self._checkout_ref(repo_dir_path, verbosity, recursive) - gmpath = os.path.join(repo_dir_path, - ExternalsDescription.GIT_SUBMODULES_FILENAME) - if os.path.exists(gmpath): - self._gitmodules = gmpath - self._submods = git_submodule_status(repo_dir_path) - else: - self._gitmodules = None - self._submods = None - - def status(self, stat, repo_dir_path): - """ - If the repo destination directory exists, ensure it is correct (from - correct URL, correct branch or tag), and possibly update the source. - If the repo destination directory does not exist, checkout the correct - branch or tag. - """ - self._check_sync(stat, repo_dir_path) - if os.path.exists(repo_dir_path): - self._status_summary(stat, repo_dir_path) - - def submodules_file(self, repo_path=None): - if repo_path is not None: - gmpath = os.path.join(repo_path, - ExternalsDescription.GIT_SUBMODULES_FILENAME) - if os.path.exists(gmpath): - self._gitmodules = gmpath - self._submods = git_submodule_status(repo_path) - - return self._gitmodules - - # ---------------------------------------------------------------- - # - # Internal work functions - # - # ---------------------------------------------------------------- - def _clone_repo(self, base_dir_path, repo_dir_name, verbosity): - """Clones repo_dir_name into base_dir_path. - """ - self._git_clone(self._url, os.path.join(base_dir_path, repo_dir_name), - verbosity=verbosity) - - def _current_ref(self, dirname): - """Determine the *name* associated with HEAD at dirname. - - If we're on a tag, then returns the tag name; otherwise, returns - the current hash. Returns an empty string if no reference can be - determined (e.g., if we're not actually in a git repository). - - If we're on a branch, then the branch name is also included in - the returned string (in addition to the tag / hash). - """ - ref_found = False - - # If we're exactly at a tag, use that as the current ref - tag_found, tag_name = self._git_current_tag(dirname) - if tag_found: - current_ref = tag_name - ref_found = True - - if not ref_found: - # Otherwise, use current hash as the current ref - hash_found, hash_name = self._git_current_hash(dirname) - if hash_found: - current_ref = hash_name - ref_found = True - - if ref_found: - # If we're on a branch, include branch name in current ref - branch_found, branch_name = self._git_current_branch(dirname) - if branch_found: - current_ref = "{} (branch {})".format(current_ref, branch_name) - else: - # If we still can't find a ref, return empty string. This - # can happen if we're not actually in a git repo - current_ref = '' - - return current_ref - - def _check_sync(self, stat, repo_dir_path): - """Determine whether a git repository is in-sync with the model - description. - - Because repos can have multiple remotes, the only criteria is - whether the branch or tag is the same. - - """ - if not os.path.exists(repo_dir_path): - # NOTE(bja, 2017-10) condition should have been determined - # by _Source() object and should never be here! - stat.sync_state = ExternalStatus.STATUS_ERROR - else: - git_dir = os.path.join(repo_dir_path, '.git') - if not os.path.exists(git_dir): - # NOTE(bja, 2017-10) directory exists, but no git repo - # info.... Can't test with subprocess git command - # because git will move up directory tree until it - # finds the parent repo git dir! - stat.sync_state = ExternalStatus.UNKNOWN - else: - self._check_sync_logic(stat, repo_dir_path) - - def _check_sync_logic(self, stat, repo_dir_path): - """Compare the underlying hashes of the currently checkout ref and the - expected ref. - - Output: sets the sync_state as well as the current and - expected ref in the input status object. - - """ - def compare_refs(current_ref, expected_ref): - """Compare the current and expected ref. - - """ - if current_ref == expected_ref: - status = ExternalStatus.STATUS_OK - else: - status = ExternalStatus.MODEL_MODIFIED - return status - - # get the full hash of the current commit - _, current_ref = self._git_current_hash(repo_dir_path) - - if self._branch: - if self._url == LOCAL_PATH_INDICATOR: - expected_ref = self._branch - else: - remote_name = self._remote_name_for_url(self._url, - repo_dir_path) - if not remote_name: - # git doesn't know about this remote. by definition - # this is a modified state. - expected_ref = "unknown_remote/{0}".format(self._branch) - else: - expected_ref = "{0}/{1}".format(remote_name, self._branch) - elif self._hash: - expected_ref = self._hash - elif self._tag: - expected_ref = self._tag - else: - msg = 'In repo "{0}": none of branch, hash or tag are set'.format( - self._name) - fatal_error(msg) - - # record the *names* of the current and expected branches - stat.current_version = self._current_ref(repo_dir_path) - stat.expected_version = copy.deepcopy(expected_ref) - - if current_ref == EMPTY_STR: - stat.sync_state = ExternalStatus.UNKNOWN - else: - # get the underlying hash of the expected ref - revparse_status, expected_ref_hash = self._git_revparse_commit( - expected_ref, repo_dir_path) - if revparse_status: - # We failed to get the hash associated with - # expected_ref. Maybe we should assign this to some special - # status, but for now we're just calling this out-of-sync to - # remain consistent with how this worked before. - stat.sync_state = ExternalStatus.MODEL_MODIFIED - else: - # compare the underlying hashes - stat.sync_state = compare_refs(current_ref, expected_ref_hash) - - @classmethod - def _remote_name_for_url(cls, remote_url, dirname): - """Return the remote name matching remote_url (or None) - - """ - git_output = cls._git_remote_verbose(dirname) - git_output = git_output.splitlines() - for line in git_output: - data = line.strip() - if not data: - continue - data = data.split() - name = data[0].strip() - url = data[1].strip() - if remote_url == url: - return name - return None - - def _create_remote_name(self): - """The url specified in the externals description file was not known - to git. We need to add it, which means adding a unique and - safe name.... - - The assigned name needs to be safe for git to use, e.g. can't - look like a path 'foo/bar' and work with both remote and local paths. - - Remote paths include but are not limited to: git, ssh, https, - github, gitlab, bitbucket, custom server, etc. - - Local paths can be relative or absolute. They may contain - shell variables, e.g. ${REPO_ROOT}/repo_name, or username - expansion, i.e. ~/ or ~someuser/. - - Relative paths must be at least one layer of redirection, i.e. - container/../ext_repo, but may be many layers deep, e.g. - container/../../../../../ext_repo - - NOTE(bja, 2017-11) - - The base name below may not be unique, for example if the - user has local paths like: - - /path/to/my/repos/nice_repo - /path/to/other/repos/nice_repo - - But the current implementation should cover most common - use cases for remotes and still provide usable names. - - """ - url = copy.deepcopy(self._url) - if is_remote_url(url): - url = split_remote_url(url) - else: - url = expand_local_url(url, self._name) - url = url.split('/') - repo_name = url[-1] - base_name = url[-2] - # repo name should nominally already be something that git can - # deal with. We need to remove other possibly troublesome - # punctuation, e.g. /, $, from the base name. - unsafe_characters = '!@#$%^&*()[]{}\\/,;~' - for unsafe in unsafe_characters: - base_name = base_name.replace(unsafe, '') - remote_name = "{0}_{1}".format(base_name, repo_name) - return remote_name - - def _checkout_ref(self, repo_dir, verbosity, submodules): - """Checkout the user supplied reference - if is True, recursively initialize and update - the repo's submodules - """ - # import pdb; pdb.set_trace() - if self._url.strip() == LOCAL_PATH_INDICATOR: - self._checkout_local_ref(verbosity, submodules, repo_dir) - else: - self._checkout_external_ref(verbosity, submodules, repo_dir) - - if self._sparse: - self._sparse_checkout(repo_dir, verbosity) - - - def _checkout_local_ref(self, verbosity, submodules, dirname): - """Checkout the reference considering the local repo only. Do not - fetch any additional remotes or specify the remote when - checkout out the ref. - if is True, recursively initialize and update - the repo's submodules - """ - if self._tag: - ref = self._tag - elif self._branch: - ref = self._branch - else: - ref = self._hash - - self._check_for_valid_ref(ref, remote_name=None, - dirname=dirname) - self._git_checkout_ref(ref, verbosity, submodules, dirname) - - def _checkout_external_ref(self, verbosity, submodules, dirname): - """Checkout the reference from a remote repository into dirname. - if is True, recursively initialize and update - the repo's submodules. - Note that this results in a 'detached HEAD' state if checking out - a branch, because we check out the remote branch rather than the - local. See https://github.com/ESMCI/manage_externals/issues/34 for - more discussion. - """ - if self._tag: - ref = self._tag - elif self._branch: - ref = self._branch - else: - ref = self._hash - - remote_name = self._remote_name_for_url(self._url, dirname) - if not remote_name: - remote_name = self._create_remote_name() - self._git_remote_add(remote_name, self._url, dirname) - self._git_fetch(remote_name, dirname) - - # NOTE(bja, 2018-03) we need to send separate ref and remote - # name to check_for_vaild_ref, but the combined name to - # checkout_ref! - self._check_for_valid_ref(ref, remote_name, dirname) - - if self._branch: - # Prepend remote name to branch. This means we avoid various - # special cases if the local branch is not tracking the remote or - # cannot be trivially fast-forwarded to match; but, it also - # means we end up in a 'detached HEAD' state. - ref = '{0}/{1}'.format(remote_name, ref) - self._git_checkout_ref(ref, verbosity, submodules, dirname) - - def _sparse_checkout(self, repo_dir, verbosity): - """Use git read-tree to thin the working tree.""" - cmd = ['cp', os.path.join(repo_dir, self._sparse), - os.path.join(repo_dir, - '.git/info/sparse-checkout')] - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - self._git_sparse_checkout(verbosity, repo_dir) - - def _check_for_valid_ref(self, ref, remote_name, dirname): - """Try some basic sanity checks on the user supplied reference so we - can provide a more useful error message than calledprocess - error... - - remote_name can be NOne - """ - is_tag = self._ref_is_tag(ref, dirname) - is_branch = self._ref_is_branch(ref, remote_name, dirname) - is_hash = self._ref_is_hash(ref, dirname) - is_valid = is_tag or is_branch or is_hash - if not is_valid: - msg = ('In repo "{0}": reference "{1}" does not appear to be a ' - 'valid tag, branch or hash! Please verify the reference ' - 'name (e.g. spelling), is available from: {2} '.format( - self._name, ref, self._url)) - fatal_error(msg) - - if is_tag: - is_unique_tag, msg = self._is_unique_tag(ref, remote_name, - dirname) - if not is_unique_tag: - msg = ('In repo "{0}": tag "{1}" {2}'.format( - self._name, self._tag, msg)) - fatal_error(msg) - - return is_valid - - def _is_unique_tag(self, ref, remote_name, dirname): - """Verify that a reference is a valid tag and is unique (not a branch) - - Tags may be tag names, or SHA id's. It is also possible that a - branch and tag have the some name. - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - - """ - is_tag = self._ref_is_tag(ref, dirname) - is_branch = self._ref_is_branch(ref, remote_name, dirname) - is_hash = self._ref_is_hash(ref, dirname) - - msg = '' - is_unique_tag = False - if is_tag and not is_branch: - # unique tag - msg = 'is ok' - is_unique_tag = True - elif is_tag and is_branch: - msg = ('is both a branch and a tag. git may checkout the branch ' - 'instead of the tag depending on your version of git.') - is_unique_tag = False - elif not is_tag and is_branch: - msg = ('is a branch, and not a tag. If you intended to checkout ' - 'a branch, please change the externals description to be ' - 'a branch. If you intended to checkout a tag, it does not ' - 'exist. Please check the name.') - is_unique_tag = False - else: # not is_tag and not is_branch: - if is_hash: - # probably a sha1 or HEAD, etc, we call it a tag - msg = 'is ok' - is_unique_tag = True - else: - # undetermined state. - msg = ('does not appear to be a valid tag, branch or hash! ' - 'Please check the name and repository.') - is_unique_tag = False - - return is_unique_tag, msg - - def _ref_is_tag(self, ref, dirname): - """Verify that a reference is a valid tag according to git. - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - """ - is_tag = False - value = self._git_showref_tag(ref, dirname) - if value == 0: - is_tag = True - return is_tag - - def _ref_is_branch(self, ref, remote_name, dirname): - """Verify if a ref is any kind of branch (local, tracked remote, - untracked remote). - - remote_name can be None. - """ - local_branch = False - remote_branch = False - if remote_name: - remote_branch = self._ref_is_remote_branch(ref, remote_name, - dirname) - local_branch = self._ref_is_local_branch(ref, dirname) - - is_branch = False - if local_branch or remote_branch: - is_branch = True - return is_branch - - def _ref_is_local_branch(self, ref, dirname): - """Verify that a reference is a valid branch according to git. - - show-ref branch returns local branches that have been - previously checked out. It will not necessarily pick up - untracked remote branches. - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - - """ - is_branch = False - value = self._git_showref_branch(ref, dirname) - if value == 0: - is_branch = True - return is_branch - - def _ref_is_remote_branch(self, ref, remote_name, dirname): - """Verify that a reference is a valid branch according to git. - - show-ref branch returns local branches that have been - previously checked out. It will not necessarily pick up - untracked remote branches. - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - - """ - is_branch = False - value = self._git_lsremote_branch(ref, remote_name, dirname) - if value == 0: - is_branch = True - return is_branch - - def _ref_is_commit(self, ref, dirname): - """Verify that a reference is a valid commit according to git. - - This could be a tag, branch, sha1 id, HEAD and potentially others... - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - """ - is_commit = False - value, _ = self._git_revparse_commit(ref, dirname) - if value == 0: - is_commit = True - return is_commit - - def _ref_is_hash(self, ref, dirname): - """Verify that a reference is a valid hash according to git. - - Git doesn't seem to provide an exact way to determine if user - supplied reference is an actual hash. So we verify that the - ref is a valid commit and return the underlying commit - hash. Then check that the commit hash begins with the user - supplied string. - - Note: values returned by git_showref_* and git_revparse are - shell return codes, which are zero for success, non-zero for - error! - - """ - is_hash = False - status, git_output = self._git_revparse_commit(ref, dirname) - if status == 0: - if git_output.strip().startswith(ref): - is_hash = True - return is_hash - - def _status_summary(self, stat, repo_dir_path): - """Determine the clean/dirty status of a git repository - - """ - git_output = self._git_status_porcelain_v1z(repo_dir_path) - is_dirty = self._status_v1z_is_dirty(git_output) - if is_dirty: - stat.clean_state = ExternalStatus.DIRTY - else: - stat.clean_state = ExternalStatus.STATUS_OK - - # Now save the verbose status output incase the user wants to - # see it. - stat.status_output = self._git_status_verbose(repo_dir_path) - - @staticmethod - def _status_v1z_is_dirty(git_output): - """Parse the git status output from --porcelain=v1 -z and determine if - the repo status is clean or dirty. Dirty means: - - * modified files - * missing files - * added files - * removed - * renamed - * unmerged - - Whether untracked files are considered depends on how the status - command was run (i.e., whether it was run with the '-u' option). - - NOTE: Based on the above definition, the porcelain status - should be an empty string to be considered 'clean'. Of course - this assumes we only get an empty string from an status - command on a clean checkout, and not some error - condition... Could alse use 'git diff --quiet'. - - """ - is_dirty = False - if git_output: - is_dirty = True - return is_dirty - - # ---------------------------------------------------------------- - # - # system call to git for information gathering - # - # ---------------------------------------------------------------- - @staticmethod - def _git_current_hash(dirname): - """Return the full hash of the currently checked-out version. - - Returns a tuple, (hash_found, hash), where hash_found is a - logical specifying whether a hash was found for HEAD (False - could mean we're not in a git repository at all). (If hash_found - is False, then hash is ''.) - """ - status, git_output = GitRepository._git_revparse_commit("HEAD", - dirname) - hash_found = not status - if not hash_found: - git_output = '' - return hash_found, git_output - - @staticmethod - def _git_current_remote_branch(dirname): - """Determines the name of the current remote branch, if any. - - if dir is None, uses the cwd. - - Returns a tuple, (branch_found, branch_name), where branch_found - is a bool specifying whether a branch name was found for - HEAD. (If branch_found is False, then branch_name is ''). - branch_name is in the format '$remote/$branch', e.g. 'origin/foo'. - """ - branch_found = False - branch_name = '' - - cmd = 'git -C {dirname} log -n 1 --pretty=%d HEAD'.format( - dirname=dirname).split() - status, git_output = execute_subprocess(cmd, - output_to_caller=True, - status_to_caller=True) - branch_found = 'HEAD,' in git_output - if branch_found: - # git_output is of the form " (HEAD, origin/blah)" - branch_name = git_output.split(',')[1].strip()[:-1] - return branch_found, branch_name - - @staticmethod - def _git_current_branch(dirname): - """Determines the name of the current local branch. - - Returns a tuple, (branch_found, branch_name), where branch_found - is a bool specifying whether a branch name was found for - HEAD. (If branch_found is False, then branch_name is ''.) - Note that currently we check out the remote branch rather than - the local, so this command does not return the just-checked-out - branch. See _git_current_remote_branch. - """ - cmd = 'git -C {dirname} symbolic-ref --short -q HEAD'.format( - dirname=dirname).split() - status, git_output = execute_subprocess(cmd, - output_to_caller=True, - status_to_caller=True) - branch_found = not status - if branch_found: - git_output = git_output.strip() - else: - git_output = '' - return branch_found, git_output - - @staticmethod - def _git_current_tag(dirname): - """Determines the name tag corresponding to HEAD (if any). - - if dirname is None, uses the cwd. - - Returns a tuple, (tag_found, tag_name), where tag_found is a - bool specifying whether we found a tag name corresponding to - HEAD. (If tag_found is False, then tag_name is ''.) - """ - cmd = 'git -C {dirname} describe --exact-match --tags HEAD'.format( - dirname=dirname).split() - status, git_output = execute_subprocess(cmd, - output_to_caller=True, - status_to_caller=True) - tag_found = not status - if tag_found: - git_output = git_output.strip() - else: - git_output = '' - return tag_found, git_output - - @staticmethod - def _git_showref_tag(ref, dirname): - """Run git show-ref check if the user supplied ref is a tag. - - could also use git rev-parse --quiet --verify tagname^{tag} - """ - cmd = ('git -C {dirname} show-ref --quiet --verify refs/tags/{ref}' - .format(dirname=dirname, ref=ref).split()) - status = execute_subprocess(cmd, status_to_caller=True) - return status - - @staticmethod - def _git_showref_branch(ref, dirname): - """Run git show-ref check if the user supplied ref is a local or - tracked remote branch. - - """ - cmd = ('git -C {dirname} show-ref --quiet --verify refs/heads/{ref}' - .format(dirname=dirname, ref=ref).split()) - status = execute_subprocess(cmd, status_to_caller=True) - return status - - @staticmethod - def _git_lsremote_branch(ref, remote_name, dirname): - """Run git ls-remote to check if the user supplied ref is a remote - branch that is not being tracked - - """ - cmd = ('git -C {dirname} ls-remote --exit-code --heads ' - '{remote_name} {ref}').format( - dirname=dirname, remote_name=remote_name, ref=ref).split() - status, output = execute_subprocess(cmd, status_to_caller=True, output_to_caller=True) - if not status and not f"refs/heads/{ref}" in output: - # In this case the ref is contained in the branch name but is not the complete branch name - return -1 - return status - - @staticmethod - def _git_revparse_commit(ref, dirname): - """Run git rev-parse to detect if a reference is a SHA, HEAD or other - valid commit. - - """ - cmd = ('git -C {dirname} rev-parse --quiet --verify {ref}^{commit}' - .format(dirname=dirname, ref=ref, commit='{commit}').split()) - status, git_output = execute_subprocess(cmd, status_to_caller=True, - output_to_caller=True) - git_output = git_output.strip() - return status, git_output - - @staticmethod - def _git_status_porcelain_v1z(dirname): - """Run git status to obtain repository information. - - This is run with '--untracked=no' to ignore untracked files. - - The machine-portable format that is guaranteed not to change - between git versions or *user configuration*. - - """ - cmd = ('git -C {dirname} status --untracked-files=no --porcelain -z' - .format(dirname=dirname)).split() - git_output = execute_subprocess(cmd, output_to_caller=True) - return git_output - - @staticmethod - def _git_status_verbose(dirname): - """Run the git status command to obtain repository information. - """ - cmd = 'git -C {dirname} status'.format(dirname=dirname).split() - git_output = execute_subprocess(cmd, output_to_caller=True) - return git_output - - @staticmethod - def _git_remote_verbose(dirname): - """Run the git remote command to obtain repository information. - - Returned string is of the form: - myfork git@github.com:johnpaulalex/manage_externals_jp.git (fetch) - myfork git@github.com:johnpaulalex/manage_externals_jp.git (push) - """ - cmd = 'git -C {dirname} remote --verbose'.format( - dirname=dirname).split() - return execute_subprocess(cmd, output_to_caller=True) - - @staticmethod - def has_submodules(repo_dir_path): - """Return True iff the repository at has a - '.gitmodules' file - """ - fname = os.path.join(repo_dir_path, - ExternalsDescription.GIT_SUBMODULES_FILENAME) - - return os.path.exists(fname) - - # ---------------------------------------------------------------- - # - # system call to git for sideffects modifying the working tree - # - # ---------------------------------------------------------------- - @staticmethod - def _git_clone(url, repo_dir_name, verbosity): - """Clones url into repo_dir_name. - """ - cmd = 'git clone --quiet {url} {repo_dir_name}'.format( - url=url, repo_dir_name=repo_dir_name).split() - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - - @staticmethod - def _git_remote_add(name, url, dirname): - """Run the git remote command for the side effect of adding a remote - """ - cmd = 'git -C {dirname} remote add {name} {url}'.format( - dirname=dirname, name=name, url=url).split() - execute_subprocess(cmd) - - @staticmethod - def _git_fetch(remote_name, dirname): - """Run the git fetch command for the side effect of updating the repo - """ - cmd = 'git -C {dirname} fetch --quiet --tags {remote_name}'.format( - dirname=dirname, remote_name=remote_name).split() - execute_subprocess(cmd) - - @staticmethod - def _git_checkout_ref(ref, verbosity, submodules, dirname): - """Run the git checkout command for the side effect of updating the repo - - Param: ref is a reference to a local or remote object in the - form 'origin/my_feature', or 'tag1'. - - """ - cmd = 'git -C {dirname} checkout --quiet {ref}'.format( - dirname=dirname, ref=ref).split() - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - if submodules: - GitRepository._git_update_submodules(verbosity, dirname) - - @staticmethod - def _git_sparse_checkout(verbosity, dirname): - """Configure repo via read-tree.""" - cmd = 'git -C {dirname} config core.sparsecheckout true'.format( - dirname=dirname).split() - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - cmd = 'git -C {dirname} read-tree -mu HEAD'.format( - dirname=dirname).split() - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - - @staticmethod - def _git_update_submodules(verbosity, dirname): - """Run git submodule update for the side effect of updating this - repo's submodules. - """ - # due to https://vielmetti.typepad.com/logbook/2022/10/git-security-fixes-lead-to-fatal-transport-file-not-allowed-error-in-ci-systems-cve-2022-39253.html - # submodules from file doesn't work without overriding the protocol, this is done - # for testing submodule support but should not be done in practice - file_protocol = "" - if 'unittest' in sys.modules.keys(): - file_protocol = "-c protocol.file.allow=always" - - # First, verify that we have a .gitmodules file - if os.path.exists( - os.path.join(dirname, - ExternalsDescription.GIT_SUBMODULES_FILENAME)): - cmd = ('git {file_protocol} -C {dirname} submodule update --init --recursive' - .format(file_protocol=file_protocol, dirname=dirname)).split() - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - - execute_subprocess(cmd) diff --git a/manage_externals/manic/repository_svn.py b/manage_externals/manic/repository_svn.py deleted file mode 100644 index 32a71184b4..0000000000 --- a/manage_externals/manic/repository_svn.py +++ /dev/null @@ -1,291 +0,0 @@ -"""Class for interacting with svn repositories -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import os -import re -import xml.etree.ElementTree as ET - -from .global_constants import EMPTY_STR, VERBOSITY_VERBOSE -from .repository import Repository -from .externals_status import ExternalStatus -from .utils import fatal_error, indent_string, printlog -from .utils import execute_subprocess - - -class SvnRepository(Repository): - """ - Class to represent and operate on a repository description. - - For testing purpose, all system calls to svn should: - - * be isolated in separate functions with no application logic - * of the form: - - cmd = ['svn', ...] - - value = execute_subprocess(cmd, output_to_caller={T|F}, - status_to_caller={T|F}) - - return value - * be static methods (not rely on self) - * name as _svn_subcommand_args(user_args) - - This convention allows easy unit testing of the repository logic - by mocking the specific calls to return predefined results. - - """ - RE_URLLINE = re.compile(r'^URL:') - - def __init__(self, component_name, repo, ignore_ancestry=False): - """ - Parse repo (a XML element). - """ - Repository.__init__(self, component_name, repo) - if 'github.com' in self._url: - msg = "SVN access to github.com is no longer supported" - fatal_error(msg) - self._ignore_ancestry = ignore_ancestry - if self._url.endswith('/'): - # there is already a '/' separator in the URL; no need to add another - url_sep = '' - else: - url_sep = '/' - if self._branch: - self._url = self._url + url_sep + self._branch - elif self._tag: - self._url = self._url + url_sep + self._tag - else: - msg = "DEV_ERROR in svn repository. Shouldn't be here!" - fatal_error(msg) - - # ---------------------------------------------------------------- - # - # Public API, defined by Repository - # - # ---------------------------------------------------------------- - def checkout(self, base_dir_path, repo_dir_name, verbosity, recursive): # pylint: disable=unused-argument - """Checkout or update the working copy - - If the repo destination directory exists, switch the sandbox to - match the externals description. - - If the repo destination directory does not exist, checkout the - correct branch or tag. - NB: is include as an argument for compatibility with - git functionality (repository_git.py) - - """ - repo_dir_path = os.path.join(base_dir_path, repo_dir_name) - if os.path.exists(repo_dir_path): - cwd = os.getcwd() - os.chdir(repo_dir_path) - self._svn_switch(self._url, self._ignore_ancestry, verbosity) - # svn switch can lead to a conflict state, but it gives a - # return code of 0. So now we need to make sure that we're - # in a clean (non-conflict) state. - self._abort_if_dirty(repo_dir_path, - "Expected clean state following switch") - os.chdir(cwd) - else: - self._svn_checkout(self._url, repo_dir_path, verbosity) - - def status(self, stat, repo_dir_path): - """ - Check and report the status of the repository - """ - self._check_sync(stat, repo_dir_path) - if os.path.exists(repo_dir_path): - self._status_summary(stat, repo_dir_path) - - # ---------------------------------------------------------------- - # - # Internal work functions - # - # ---------------------------------------------------------------- - def _check_sync(self, stat, repo_dir_path): - """Check to see if repository directory exists and is at the expected - url. Return: status object - - """ - if not os.path.exists(repo_dir_path): - # NOTE(bja, 2017-10) this state should have been handled by - # the source object and we never get here! - stat.sync_state = ExternalStatus.STATUS_ERROR - else: - svn_output = self._svn_info(repo_dir_path) - if not svn_output: - # directory exists, but info returned nothing. .svn - # directory removed or incomplete checkout? - stat.sync_state = ExternalStatus.UNKNOWN - else: - stat.sync_state, stat.current_version = \ - self._check_url(svn_output, self._url) - stat.expected_version = '/'.join(self._url.split('/')[3:]) - - def _abort_if_dirty(self, repo_dir_path, message): - """Check if the repo is in a dirty state; if so, abort with a - helpful message. - - """ - - stat = ExternalStatus() - self._status_summary(stat, repo_dir_path) - if stat.clean_state != ExternalStatus.STATUS_OK: - status = self._svn_status_verbose(repo_dir_path) - status = indent_string(status, 4) - errmsg = """In directory - {cwd} - -svn status now shows: -{status} - -ERROR: {message} - -One possible cause of this problem is that there may have been untracked -files in your working directory that had the same name as tracked files -in the new revision. - -To recover: Clean up the above directory (resolving conflicts, etc.), -then rerun checkout_externals. -""".format(cwd=repo_dir_path, message=message, status=status) - - fatal_error(errmsg) - - @staticmethod - def _check_url(svn_output, expected_url): - """Determine the svn url from svn info output and return whether it - matches the expected value. - - """ - url = None - for line in svn_output.splitlines(): - if SvnRepository.RE_URLLINE.match(line): - url = line.split(': ')[1].strip() - break - if not url: - status = ExternalStatus.UNKNOWN - elif url == expected_url: - status = ExternalStatus.STATUS_OK - else: - status = ExternalStatus.MODEL_MODIFIED - - if url: - current_version = '/'.join(url.split('/')[3:]) - else: - current_version = EMPTY_STR - - return status, current_version - - def _status_summary(self, stat, repo_dir_path): - """Report whether the svn repository is in-sync with the model - description and whether the sandbox is clean or dirty. - - """ - svn_output = self._svn_status_xml(repo_dir_path) - is_dirty = self.xml_status_is_dirty(svn_output) - if is_dirty: - stat.clean_state = ExternalStatus.DIRTY - else: - stat.clean_state = ExternalStatus.STATUS_OK - - # Now save the verbose status output incase the user wants to - # see it. - stat.status_output = self._svn_status_verbose(repo_dir_path) - - @staticmethod - def xml_status_is_dirty(svn_output): - """Parse svn status xml output and determine if the working copy is - clean or dirty. Dirty is defined as: - - * modified files - * added files - * deleted files - * missing files - - Unversioned files do not affect the clean/dirty status. - - 'external' is also an acceptable state - - """ - # pylint: disable=invalid-name - SVN_EXTERNAL = 'external' - SVN_UNVERSIONED = 'unversioned' - # pylint: enable=invalid-name - - is_dirty = False - try: - xml_status = ET.fromstring(svn_output) - except BaseException: - fatal_error( - "SVN returned invalid XML message {}".format(svn_output)) - xml_target = xml_status.find('./target') - entries = xml_target.findall('./entry') - for entry in entries: - status = entry.find('./wc-status') - item = status.get('item') - if item == SVN_EXTERNAL: - continue - if item == SVN_UNVERSIONED: - continue - is_dirty = True - break - return is_dirty - - # ---------------------------------------------------------------- - # - # system call to svn for information gathering - # - # ---------------------------------------------------------------- - @staticmethod - def _svn_info(repo_dir_path): - """Return results of svn info command - """ - cmd = ['svn', 'info', repo_dir_path] - output = execute_subprocess(cmd, output_to_caller=True) - return output - - @staticmethod - def _svn_status_verbose(repo_dir_path): - """capture the full svn status output - """ - cmd = ['svn', 'status', repo_dir_path] - svn_output = execute_subprocess(cmd, output_to_caller=True) - return svn_output - - @staticmethod - def _svn_status_xml(repo_dir_path): - """ - Get status of the subversion sandbox in repo_dir - """ - cmd = ['svn', 'status', '--xml', repo_dir_path] - svn_output = execute_subprocess(cmd, output_to_caller=True) - return svn_output - - # ---------------------------------------------------------------- - # - # system call to svn for sideffects modifying the working tree - # - # ---------------------------------------------------------------- - @staticmethod - def _svn_checkout(url, repo_dir_path, verbosity): - """ - Checkout a subversion repository (repo_url) to checkout_dir. - """ - cmd = ['svn', 'checkout', '--quiet', url, repo_dir_path] - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) - - @staticmethod - def _svn_switch(url, ignore_ancestry, verbosity): - """ - Switch branches for in an svn sandbox - """ - cmd = ['svn', 'switch', '--quiet'] - if ignore_ancestry: - cmd.append('--ignore-ancestry') - cmd.append(url) - if verbosity >= VERBOSITY_VERBOSE: - printlog(' {0}'.format(' '.join(cmd))) - execute_subprocess(cmd) diff --git a/manage_externals/manic/sourcetree.py b/manage_externals/manic/sourcetree.py deleted file mode 100644 index cf2a5b7569..0000000000 --- a/manage_externals/manic/sourcetree.py +++ /dev/null @@ -1,425 +0,0 @@ -""" -Classes to represent an externals config file (SourceTree) and the components -within it (_External). -""" - -import errno -import logging -import os - -from .externals_description import ExternalsDescription -from .externals_description import read_externals_description_file -from .externals_description import create_externals_description -from .repository_factory import create_repository -from .repository_git import GitRepository -from .externals_status import ExternalStatus -from .utils import fatal_error, printlog -from .global_constants import EMPTY_STR, LOCAL_PATH_INDICATOR -from .global_constants import VERBOSITY_VERBOSE - -class _External(object): - """ - A single component hosted in an external repository (and any children). - - The component may or may not be checked-out upon construction. - """ - # pylint: disable=R0902 - - def __init__(self, root_dir, name, local_path, required, subexternals_path, - repo, svn_ignore_ancestry, subexternal_sourcetree): - """Create a single external component (checked out or not). - - Input: - root_dir : string - the (checked-out) parent repo's root dir. - local_path : string - this external's (checked-out) subdir relative - to root_dir, e.g. "components/mom" - repo: Repository - the repo object for this external. Can be None (e.g. if this external just refers to another external file). - - name : string - name of this external (as named by the parent - reference). May or may not correspond to something in the path. - - ext_description : dict - source ExternalsDescription object - - svn_ignore_ancestry : bool - use --ignore-externals with svn switch - - subexternals_path: string - path to sub-externals config file, if any. Relative to local_path, or special value 'none'. - subexternal_sourcetree: SourceTree - corresponding to subexternals_path, if subexternals_path exists (it might not, if it is not checked out yet). - """ - self._name = name - self._required = required - - self._stat = None # Populated in status() - - self._local_path = local_path - # _repo_dir_path : full repository directory, e.g. - # "/components/mom" - repo_dir = os.path.join(root_dir, local_path) - self._repo_dir_path = os.path.abspath(repo_dir) - # _base_dir_path : base directory *containing* the repository, e.g. - # "/components" - self._base_dir_path = os.path.dirname(self._repo_dir_path) - # _repo_dir_name : base_dir_path + repo_dir_name = repo_dir_path - # e.g., "mom" - self._repo_dir_name = os.path.basename(self._repo_dir_path) - self._repo = repo - - # Does this component have subcomponents aka an externals config? - self._subexternals_path = subexternals_path - self._subexternal_sourcetree = subexternal_sourcetree - - - def get_name(self): - """ - Return the external object's name - """ - return self._name - - def get_local_path(self): - """ - Return the external object's path - """ - return self._local_path - - def get_repo_dir_path(self): - return self._repo_dir_path - - def get_subexternals_path(self): - return self._subexternals_path - - def get_repo(self): - return self._repo - - def status(self, force=False, print_progress=False): - """ - Returns status of this component and all subcomponents. - - Returns a dict mapping our local path (not component name!) to an - ExternalStatus dict. Any subcomponents will have their own top-level - path keys. Note the return value includes entries for this and all - subcomponents regardless of whether they are locally installed or not. - - Side-effect: If self._stat is empty or force is True, calculates _stat. - """ - calc_stat = force or not self._stat - - if calc_stat: - self._stat = ExternalStatus() - self._stat.path = self.get_local_path() - if not self._required: - self._stat.source_type = ExternalStatus.OPTIONAL - elif self._local_path == LOCAL_PATH_INDICATOR: - # LOCAL_PATH_INDICATOR, '.' paths, are standalone - # component directories that are not managed by - # checkout_subexternals. - self._stat.source_type = ExternalStatus.STANDALONE - else: - # managed by checkout_subexternals - self._stat.source_type = ExternalStatus.MANAGED - - subcomponent_stats = {} - if not os.path.exists(self._repo_dir_path): - if calc_stat: - # No local repository. - self._stat.sync_state = ExternalStatus.EMPTY - msg = ('status check: repository directory for "{0}" does not ' - 'exist.'.format(self._name)) - logging.info(msg) - self._stat.current_version = 'not checked out' - # NOTE(bja, 2018-01) directory doesn't exist, so we cannot - # use repo to determine the expected version. We just take - # a best-guess based on the assumption that only tag or - # branch should be set, but not both. - if not self._repo: - self._stat.expected_version = 'unknown' - else: - self._stat.expected_version = self._repo.tag() + self._repo.branch() - else: - # Merge local repository state (e.g. clean/dirty) into self._stat. - if calc_stat and self._repo: - self._repo.status(self._stat, self._repo_dir_path) - - # Status of subcomponents, if any. - if self._subexternals_path and self._subexternal_sourcetree: - cwd = os.getcwd() - # SourceTree.status() expects to be called from the correct - # root directory. - os.chdir(self._repo_dir_path) - subcomponent_stats = self._subexternal_sourcetree.status(self._local_path, force=force, print_progress=print_progress) - os.chdir(cwd) - - # Merge our status + subcomponent statuses into one return dict keyed - # by component path. - all_stats = {} - # don't add the root component because we don't manage it - # and can't provide useful info about it. - if self._local_path != LOCAL_PATH_INDICATOR: - # store the stats under the local_path, not comp name so - # it will be sorted correctly - all_stats[self._stat.path] = self._stat - - if subcomponent_stats: - all_stats.update(subcomponent_stats) - - return all_stats - - def checkout(self, verbosity): - """ - If the repo destination directory exists, ensure it is correct (from - correct URL, correct branch or tag), and possibly updateit. - If the repo destination directory does not exist, checkout the correct - branch or tag. - Does not check out sub-externals, see SourceTree.checkout(). - """ - # Make sure we are in correct location - if not os.path.exists(self._repo_dir_path): - # repository directory doesn't exist. Need to check it - # out, and for that we need the base_dir_path to exist - try: - os.makedirs(self._base_dir_path) - except OSError as error: - if error.errno != errno.EEXIST: - msg = 'Could not create directory "{0}"'.format( - self._base_dir_path) - fatal_error(msg) - - if not self._stat: - self.status() - assert self._stat - - if self._stat.source_type != ExternalStatus.STANDALONE: - if verbosity >= VERBOSITY_VERBOSE: - # NOTE(bja, 2018-01) probably do not want to pass - # verbosity in this case, because if (verbosity == - # VERBOSITY_DUMP), then the previous status output would - # also be dumped, adding noise to the output. - self._stat.log_status_message(VERBOSITY_VERBOSE) - - if self._repo: - if self._stat.sync_state == ExternalStatus.STATUS_OK: - # If we're already in sync, avoid showing verbose output - # from the checkout command, unless the verbosity level - # is 2 or more. - checkout_verbosity = verbosity - 1 - else: - checkout_verbosity = verbosity - - self._repo.checkout(self._base_dir_path, self._repo_dir_name, - checkout_verbosity, self.clone_recursive()) - - def replace_subexternal_sourcetree(self, sourcetree): - self._subexternal_sourcetree = sourcetree - - def clone_recursive(self): - 'Return True iff any .gitmodules files should be processed' - # Try recursive .gitmodules unless there is an externals entry - recursive = not self._subexternals_path - - return recursive - - -class SourceTree(object): - """ - SourceTree represents a group of managed externals. - - Those externals may not be checked out locally yet, they might only - have Repository objects pointing to their respective repositories. - """ - - @classmethod - def from_externals_file(cls, parent_repo_dir_path, parent_repo, - externals_path): - """Creates a SourceTree representing the given externals file. - - Looks up a git submodules file as an optional backup if there is no - externals file specified. - - Returns None if there is no externals file (i.e. it's None or 'none'), - or if the externals file hasn't been checked out yet. - - parent_repo_dir_path: parent repo root dir - parent_repo: parent repo. - externals_path: path to externals file, relative to parent_repo_dir_path. - """ - if not os.path.exists(parent_repo_dir_path): - # NOTE(bja, 2017-10) repository has not been checked out - # yet, can't process the externals file. Assume we are - # checking status before code is checkoud out and this - # will be handled correctly later. - return None - - if externals_path.lower() == 'none': - # With explicit 'none', do not look for git submodules file. - return None - - cwd = os.getcwd() - os.chdir(parent_repo_dir_path) - - if not externals_path: - if GitRepository.has_submodules(parent_repo_dir_path): - externals_path = ExternalsDescription.GIT_SUBMODULES_FILENAME - else: - return None - - if not os.path.exists(externals_path): - # NOTE(bja, 2017-10) this check is redundant with the one - # in read_externals_description_file! - msg = ('Externals description file "{0}" ' - 'does not exist! In directory: {1}'.format( - externals_path, parent_repo_dir_path)) - fatal_error(msg) - - externals_root = parent_repo_dir_path - # model_data is a dict-like object which mirrors the file format. - model_data = read_externals_description_file(externals_root, - externals_path) - # ext_description is another dict-like object (see ExternalsDescription) - ext_description = create_externals_description(model_data, - parent_repo=parent_repo) - externals_sourcetree = SourceTree(externals_root, ext_description) - os.chdir(cwd) - return externals_sourcetree - - def __init__(self, root_dir, ext_description, svn_ignore_ancestry=False): - """ - Build a SourceTree object from an ExternalDescription. - - root_dir: the (checked-out) parent repo root dir. - """ - self._root_dir = os.path.abspath(root_dir) - self._all_components = {} # component_name -> _External - self._required_compnames = [] - for comp, desc in ext_description.items(): - local_path = desc[ExternalsDescription.PATH] - required = desc[ExternalsDescription.REQUIRED] - repo_info = desc[ExternalsDescription.REPO] - subexternals_path = desc[ExternalsDescription.EXTERNALS] - - repo = create_repository(comp, - repo_info, - svn_ignore_ancestry=svn_ignore_ancestry) - - sourcetree = None - # Treat a .gitmodules file as a backup externals config - if not subexternals_path: - parent_repo_dir_path = os.path.abspath(os.path.join(root_dir, - local_path)) - if GitRepository.has_submodules(parent_repo_dir_path): - subexternals_path = ExternalsDescription.GIT_SUBMODULES_FILENAME - - # Might return None (if the subexternal isn't checked out yet, or subexternal is None or 'none') - subexternal_sourcetree = SourceTree.from_externals_file( - os.path.join(self._root_dir, local_path), - repo, - subexternals_path) - src = _External(self._root_dir, comp, local_path, required, - subexternals_path, repo, svn_ignore_ancestry, - subexternal_sourcetree) - - self._all_components[comp] = src - if required: - self._required_compnames.append(comp) - - def status(self, relative_path_base=LOCAL_PATH_INDICATOR, - force=False, print_progress=False): - """Return a dictionary of local path->ExternalStatus. - - Notes about the returned dictionary: - * It is keyed by local path (e.g. 'components/mom'), not by - component name (e.g. 'mom'). - * It contains top-level keys for all traversed components, whether - discovered by recursion or top-level. - * It contains entries for all components regardless of whether they - are locally installed or not, or required or optional. -x """ - load_comps = self._all_components.keys() - - summary = {} # Holds merged statuses from all components. - for comp in load_comps: - if print_progress: - printlog('{0}, '.format(comp), end='') - stat = self._all_components[comp].status(force=force, - print_progress=print_progress) - - # Returned status dictionary is keyed by local path; prepend - # relative_path_base if not already there. - stat_final = {} - for name in stat.keys(): - if stat[name].path.startswith(relative_path_base): - stat_final[name] = stat[name] - else: - modified_path = os.path.join(relative_path_base, - stat[name].path) - stat_final[modified_path] = stat[name] - stat_final[modified_path].path = modified_path - summary.update(stat_final) - - return summary - - def _find_installed_optional_components(self): - """Returns a list of installed optional component names, if any.""" - installed_comps = [] - for comp_name, ext in self._all_components.items(): - if comp_name in self._required_compnames: - continue - # Note that in practice we expect this status to be cached. - path_to_stat = ext.status() - - # If any part of this component exists locally, consider it - # installed and therefore eligible for updating. - if any(s.sync_state != ExternalStatus.EMPTY - for s in path_to_stat.values()): - installed_comps.append(comp_name) - return installed_comps - - def checkout(self, verbosity, load_all, load_comp=None): - """ - Checkout or update indicated components into the configured subdirs. - - If load_all is True, checkout all externals (required + optional), recursively. - If load_all is False and load_comp is set, checkout load_comp (and any required subexternals, plus any optional subexternals that are already checked out, recursively) - If load_all is False and load_comp is None, checkout all required externals, plus any optionals that are already checked out, recursively. - """ - if load_all: - tmp_comps = self._all_components.keys() - elif load_comp is not None: - tmp_comps = [load_comp] - else: - local_optional_compnames = self._find_installed_optional_components() - tmp_comps = self._required_compnames + local_optional_compnames - if local_optional_compnames: - printlog('Found locally installed optional components: ' + - ', '.join(local_optional_compnames)) - bad_compnames = set(local_optional_compnames) - set(self._all_components.keys()) - if bad_compnames: - printlog('Internal error: found locally installed components that are not in the global list of all components: ' + ','.join(bad_compnames)) - - if verbosity >= VERBOSITY_VERBOSE: - printlog('Checking out externals: ') - else: - printlog('Checking out externals: ', end='') - - # Sort by path so that if paths are nested the - # parent repo is checked out first. - load_comps = sorted(tmp_comps, key=lambda comp: self._all_components[comp].get_local_path()) - - # checkout. - for comp_name in load_comps: - if verbosity < VERBOSITY_VERBOSE: - printlog('{0}, '.format(comp_name), end='') - else: - # verbose output handled by the _External object, just - # output a newline - printlog(EMPTY_STR) - c = self._all_components[comp_name] - # Does not recurse. - c.checkout(verbosity) - # Recursively check out subexternals, if any. Returns None - # if there's no subexternals path. - component_subexternal_sourcetree = SourceTree.from_externals_file( - c.get_repo_dir_path(), - c.get_repo(), - c.get_subexternals_path()) - c.replace_subexternal_sourcetree(component_subexternal_sourcetree) - if component_subexternal_sourcetree: - component_subexternal_sourcetree.checkout(verbosity, load_all) - printlog('') diff --git a/manage_externals/manic/utils.py b/manage_externals/manic/utils.py deleted file mode 100644 index 9c63ffe65e..0000000000 --- a/manage_externals/manic/utils.py +++ /dev/null @@ -1,330 +0,0 @@ -#!/usr/bin/env python3 -""" -Common public utilities for manic package - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import logging -import os -import subprocess -import sys -from threading import Timer - -from .global_constants import LOCAL_PATH_INDICATOR - -# --------------------------------------------------------------------- -# -# screen and logging output and functions to massage text for output -# -# --------------------------------------------------------------------- - - -def log_process_output(output): - """Log each line of process output at debug level so it can be - filtered if necessary. By default, output is a single string, and - logging.debug(output) will only put log info heading on the first - line. This makes it hard to filter with grep. - - """ - output = output.split('\n') - for line in output: - logging.debug(line) - - -def printlog(msg, **kwargs): - """Wrapper script around print to ensure that everything printed to - the screen also gets logged. - - """ - logging.info(msg) - if kwargs: - print(msg, **kwargs) - else: - print(msg) - sys.stdout.flush() - - -def last_n_lines(the_string, n_lines, truncation_message=None): - """Returns the last n lines of the given string - - Args: - the_string: str - n_lines: int - truncation_message: str, optional - - Returns a string containing the last n lines of the_string - - If truncation_message is provided, the returned string begins with - the given message if and only if the string is greater than n lines - to begin with. - """ - - lines = the_string.splitlines(True) - if len(lines) <= n_lines: - return_val = the_string - else: - lines_subset = lines[-n_lines:] - str_truncated = ''.join(lines_subset) - if truncation_message: - str_truncated = truncation_message + '\n' + str_truncated - return_val = str_truncated - - return return_val - - -def indent_string(the_string, indent_level): - """Indents the given string by a given number of spaces - - Args: - the_string: str - indent_level: int - - Returns a new string that is the same as the_string, except that - each line is indented by 'indent_level' spaces. - - In python3, this can be done with textwrap.indent. - """ - - lines = the_string.splitlines(True) - padding = ' ' * indent_level - lines_indented = [padding + line for line in lines] - return ''.join(lines_indented) - -# --------------------------------------------------------------------- -# -# error handling -# -# --------------------------------------------------------------------- - - -def fatal_error(message): - """ - Error output function - """ - logging.error(message) - raise RuntimeError("{0}ERROR: {1}".format(os.linesep, message)) - - -# --------------------------------------------------------------------- -# -# Data conversion / manipulation -# -# --------------------------------------------------------------------- -def str_to_bool(bool_str): - """Convert a sting representation of as boolean into a true boolean. - - Conversion should be case insensitive. - """ - value = None - str_lower = bool_str.lower() - if str_lower in ('true', 't'): - value = True - elif str_lower in ('false', 'f'): - value = False - if value is None: - msg = ('ERROR: invalid boolean string value "{0}". ' - 'Must be "true" or "false"'.format(bool_str)) - fatal_error(msg) - return value - - -REMOTE_PREFIXES = ['http://', 'https://', 'ssh://', 'git@'] - - -def is_remote_url(url): - """check if the user provided a local file path instead of a - remote. If so, it must be expanded to an absolute - path. - - """ - remote_url = False - for prefix in REMOTE_PREFIXES: - if url.startswith(prefix): - remote_url = True - return remote_url - - -def split_remote_url(url): - """check if the user provided a local file path or a - remote. If remote, try to strip off protocol info. - - """ - remote_url = is_remote_url(url) - if not remote_url: - return url - - for prefix in REMOTE_PREFIXES: - url = url.replace(prefix, '') - - if '@' in url: - url = url.split('@')[1] - - if ':' in url: - url = url.split(':')[1] - - return url - - -def expand_local_url(url, field): - """check if the user provided a local file path instead of a - remote. If so, it must be expanded to an absolute - path. - - Note: local paths of LOCAL_PATH_INDICATOR have special meaning and - represent local copy only, don't work with the remotes. - - """ - remote_url = is_remote_url(url) - if not remote_url: - if url.strip() == LOCAL_PATH_INDICATOR: - pass - else: - url = os.path.expandvars(url) - url = os.path.expanduser(url) - if not os.path.isabs(url): - msg = ('WARNING: Externals description for "{0}" contains a ' - 'url that is not remote and does not expand to an ' - 'absolute path. Version control operations may ' - 'fail.\n\nurl={1}'.format(field, url)) - printlog(msg) - else: - url = os.path.normpath(url) - return url - - -# --------------------------------------------------------------------- -# -# subprocess -# -# --------------------------------------------------------------------- - -# Give the user a helpful message if we detect that a command seems to -# be hanging. -_HANGING_SEC = 300 - - -def _hanging_msg(working_directory, command): - print(""" - -Command '{command}' -from directory {working_directory} -has taken {hanging_sec} seconds. It may be hanging. - -The command will continue to run, but you may want to abort -manage_externals with ^C and investigate. A possible cause of hangs is -when svn or git require authentication to access a private -repository. On some systems, svn and git requests for authentication -information will not be displayed to the user. In this case, the program -will appear to hang. Ensure you can run svn and git manually and access -all repositories without entering your authentication information. - -""".format(command=command, - working_directory=working_directory, - hanging_sec=_HANGING_SEC)) - - -def execute_subprocess(commands, status_to_caller=False, - output_to_caller=False): - """Wrapper around subprocess.check_output to handle common - exceptions. - - check_output runs a command with arguments and waits - for it to complete. - - check_output raises an exception on a nonzero return code. if - status_to_caller is true, execute_subprocess returns the subprocess - return code, otherwise execute_subprocess treats non-zero return - status as an error and raises an exception. - - """ - cwd = os.getcwd() - msg = 'In directory: {0}\nexecute_subprocess running command:'.format(cwd) - logging.info(msg) - commands_str = ' '.join(commands) - logging.info(commands_str) - return_to_caller = status_to_caller or output_to_caller - status = -1 - output = '' - hanging_timer = Timer(_HANGING_SEC, _hanging_msg, - kwargs={"working_directory": cwd, - "command": commands_str}) - hanging_timer.start() - try: - output = subprocess.check_output(commands, stderr=subprocess.STDOUT, - universal_newlines=True) - log_process_output(output) - status = 0 - except OSError as error: - msg = failed_command_msg( - 'Command execution failed. Does the executable exist?', - commands) - logging.error(error) - fatal_error(msg) - except ValueError as error: - msg = failed_command_msg( - 'DEV_ERROR: Invalid arguments trying to run subprocess', - commands) - logging.error(error) - fatal_error(msg) - except subprocess.CalledProcessError as error: - # Only report the error if we are NOT returning to the - # caller. If we are returning to the caller, then it may be a - # simple status check. If returning, it is the callers - # responsibility determine if an error occurred and handle it - # appropriately. - if not return_to_caller: - msg_context = ('Process did not run successfully; ' - 'returned status {0}'.format(error.returncode)) - msg = failed_command_msg(msg_context, commands, - output=error.output) - logging.error(error) - logging.error(msg) - log_process_output(error.output) - fatal_error(msg) - status = error.returncode - finally: - hanging_timer.cancel() - - if status_to_caller and output_to_caller: - ret_value = (status, output) - elif status_to_caller: - ret_value = status - elif output_to_caller: - ret_value = output - else: - ret_value = None - - return ret_value - - -def failed_command_msg(msg_context, command, output=None): - """Template for consistent error messages from subprocess calls. - - If 'output' is given, it should provide the output from the failed - command - """ - - if output: - output_truncated = last_n_lines(output, 20, - truncation_message='[... Output truncated for brevity ...]') - errmsg = ('Failed with output:\n' + - indent_string(output_truncated, 4) + - '\nERROR: ') - else: - errmsg = '' - - command_str = ' '.join(command) - errmsg += """In directory - {cwd} -{context}: - {command} -""".format(cwd=os.getcwd(), context=msg_context, command=command_str) - - if output: - errmsg += 'See above for output from failed command.\n' - - return errmsg diff --git a/manage_externals/test/.coveragerc b/manage_externals/test/.coveragerc deleted file mode 100644 index 8b681888b8..0000000000 --- a/manage_externals/test/.coveragerc +++ /dev/null @@ -1,7 +0,0 @@ -[run] -branch = True -omit = test_unit_*.py - test_sys_*.py - /usr/* - .local/* - */site-packages/* \ No newline at end of file diff --git a/manage_externals/test/.gitignore b/manage_externals/test/.gitignore deleted file mode 100644 index dd5795998f..0000000000 --- a/manage_externals/test/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -# virtual environments -env_python* - -# python code coverage tool output -.coverage -htmlcov - diff --git a/manage_externals/test/.pylint.rc b/manage_externals/test/.pylint.rc deleted file mode 100644 index 64abd03e42..0000000000 --- a/manage_externals/test/.pylint.rc +++ /dev/null @@ -1,426 +0,0 @@ -[MASTER] - -# A comma-separated list of package or module names from where C extensions may -# be loaded. Extensions are loading into the active Python interpreter and may -# run arbitrary code -extension-pkg-whitelist= - -# Add files or directories to the blacklist. They should be base names, not -# paths. -ignore=.git,.svn,env2 - -# Add files or directories matching the regex patterns to the blacklist. The -# regex matches against base names, not paths. -ignore-patterns= - -# Python code to execute, usually for sys.path manipulation such as -# pygtk.require(). -#init-hook= - -# Use multiple processes to speed up Pylint. -jobs=1 - -# List of plugins (as comma separated values of python modules names) to load, -# usually to register additional checkers. -load-plugins= - -# Pickle collected data for later comparisons. -persistent=yes - -# Specify a configuration file. -#rcfile= - -# Allow loading of arbitrary C extensions. Extensions are imported into the -# active Python interpreter and may run arbitrary code. -unsafe-load-any-extension=no - - -[MESSAGES CONTROL] - -# Only show warnings with the listed confidence levels. Leave empty to show -# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED -confidence= - -# Disable the message, report, category or checker with the given id(s). You -# can either give multiple identifiers separated by comma (,) or put this -# option multiple times (only on the command line, not in the configuration -# file where it should appear only once).You can also use "--disable=all" to -# disable everything first and then reenable specific checks. For example, if -# you want to run only the similarities checker, you can use "--disable=all -# --enable=similarities". If you want to run only the classes checker, but have -# no Warning level messages displayed, use"--disable=all --enable=classes -# --disable=W" -disable=bad-continuation,useless-object-inheritance - - -# Enable the message, report, category or checker with the given id(s). You can -# either give multiple identifier separated by comma (,) or put this option -# multiple time (only on the command line, not in the configuration file where -# it should appear only once). See also the "--disable" option for examples. -enable= - - -[REPORTS] - -# Python expression which should return a note less than 10 (10 is the highest -# note). You have access to the variables errors warning, statement which -# respectively contain the number of errors / warnings messages and the total -# number of statements analyzed. This is used by the global evaluation report -# (RP0004). -evaluation=10.0 - ((float(5 * error + warning + refactor + convention) / statement) * 10) - -# Template used to display messages. This is a python new-style format string -# used to format the message information. See doc for all details -msg-template={msg_id}:{line:3d},{column:2d}: {msg} ({symbol}) - -# Set the output format. Available formats are text, parseable, colorized, json -# and msvs (visual studio).You can also give a reporter class, eg -# mypackage.mymodule.MyReporterClass. -output-format=text - -# Tells whether to display a full report or only the messages -#reports=yes - -# Activate the evaluation score. -score=yes - - -[REFACTORING] - -# Maximum number of nested blocks for function / method body -max-nested-blocks=5 - - -[BASIC] - -# Naming hint for argument names -argument-name-hint=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Regular expression matching correct argument names -argument-rgx=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Naming hint for attribute names -attr-name-hint=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Regular expression matching correct attribute names -attr-rgx=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Bad variable names which should always be refused, separated by a comma -bad-names=foo,bar,baz,toto,tutu,tata - -# Naming hint for class attribute names -class-attribute-name-hint=([A-Za-z_][A-Za-z0-9_]{2,30}|(__.*__))$ - -# Regular expression matching correct class attribute names -class-attribute-rgx=([A-Za-z_][A-Za-z0-9_]{2,30}|(__.*__))$ - -# Naming hint for class names -class-name-hint=[A-Z_][a-zA-Z0-9]+$ - -# Regular expression matching correct class names -class-rgx=[A-Z_][a-zA-Z0-9]+$ - -# Naming hint for constant names -const-name-hint=(([A-Z_][A-Z0-9_]*)|(__.*__))$ - -# Regular expression matching correct constant names -const-rgx=(([A-Z_][A-Z0-9_]*)|(__.*__))$ - -# Minimum line length for functions/classes that require docstrings, shorter -# ones are exempt. -docstring-min-length=-1 - -# Naming hint for function names -function-name-hint=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Regular expression matching correct function names -function-rgx=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Good variable names which should always be accepted, separated by a comma -good-names=i,j,k,ex,Run,_ - -# Include a hint for the correct naming format with invalid-name -include-naming-hint=no - -# Naming hint for inline iteration names -inlinevar-name-hint=[A-Za-z_][A-Za-z0-9_]*$ - -# Regular expression matching correct inline iteration names -inlinevar-rgx=[A-Za-z_][A-Za-z0-9_]*$ - -# Naming hint for method names -method-name-hint=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Regular expression matching correct method names -method-rgx=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Naming hint for module names -module-name-hint=(([a-z_][a-z0-9_]*)|([A-Z][a-zA-Z0-9]+))$ - -# Regular expression matching correct module names -module-rgx=(([a-z_][a-z0-9_]*)|([A-Z][a-zA-Z0-9]+))$ - -# Colon-delimited sets of names that determine each other's naming style when -# the name regexes allow several styles. -name-group= - -# Regular expression which should only match function or class names that do -# not require a docstring. -no-docstring-rgx=^_ - -# List of decorators that produce properties, such as abc.abstractproperty. Add -# to this list to register other decorators that produce valid properties. -property-classes=abc.abstractproperty - -# Naming hint for variable names -variable-name-hint=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - -# Regular expression matching correct variable names -variable-rgx=(([a-z][a-z0-9_]{2,30})|(_[a-z0-9_]*))$ - - -[FORMAT] - -# Expected format of line ending, e.g. empty (any line ending), LF or CRLF. -expected-line-ending-format= - -# Regexp for a line that is allowed to be longer than the limit. -ignore-long-lines=^\s*(# )??$ - -# Number of spaces of indent required inside a hanging or continued line. -indent-after-paren=4 - -# String used as indentation unit. This is usually " " (4 spaces) or "\t" (1 -# tab). -indent-string=' ' - -# Maximum number of characters on a single line. -max-line-length=100 - -# Maximum number of lines in a module -max-module-lines=1000 - -# List of optional constructs for which whitespace checking is disabled. `dict- -# separator` is used to allow tabulation in dicts, etc.: {1 : 1,\n222: 2}. -# `trailing-comma` allows a space between comma and closing bracket: (a, ). -# `empty-line` allows space-only lines. -no-space-check=trailing-comma,dict-separator - -# Allow the body of a class to be on the same line as the declaration if body -# contains single statement. -single-line-class-stmt=no - -# Allow the body of an if to be on the same line as the test if there is no -# else. -single-line-if-stmt=no - - -[LOGGING] - -# Logging modules to check that the string format arguments are in logging -# function parameter format -logging-modules=logging - - -[MISCELLANEOUS] - -# List of note tags to take in consideration, separated by a comma. -notes=FIXME,XXX,TODO - - -[SIMILARITIES] - -# Ignore comments when computing similarities. -ignore-comments=yes - -# Ignore docstrings when computing similarities. -ignore-docstrings=yes - -# Ignore imports when computing similarities. -ignore-imports=no - -# Minimum lines number of a similarity. -min-similarity-lines=4 - - -[SPELLING] - -# Spelling dictionary name. Available dictionaries: none. To make it working -# install python-enchant package. -spelling-dict= - -# List of comma separated words that should not be checked. -spelling-ignore-words= - -# A path to a file that contains private dictionary; one word per line. -spelling-private-dict-file= - -# Tells whether to store unknown words to indicated private dictionary in -# --spelling-private-dict-file option instead of raising a message. -spelling-store-unknown-words=no - - -[TYPECHECK] - -# List of decorators that produce context managers, such as -# contextlib.contextmanager. Add to this list to register other decorators that -# produce valid context managers. -contextmanager-decorators=contextlib.contextmanager - -# List of members which are set dynamically and missed by pylint inference -# system, and so shouldn't trigger E1101 when accessed. Python regular -# expressions are accepted. -generated-members= - -# Tells whether missing members accessed in mixin class should be ignored. A -# mixin class is detected if its name ends with "mixin" (case insensitive). -ignore-mixin-members=yes - -# This flag controls whether pylint should warn about no-member and similar -# checks whenever an opaque object is returned when inferring. The inference -# can return multiple potential results while evaluating a Python object, but -# some branches might not be evaluated, which results in partial inference. In -# that case, it might be useful to still emit no-member and other checks for -# the rest of the inferred objects. -ignore-on-opaque-inference=yes - -# List of class names for which member attributes should not be checked (useful -# for classes with dynamically set attributes). This supports the use of -# qualified names. -ignored-classes=optparse.Values,thread._local,_thread._local - -# List of module names for which member attributes should not be checked -# (useful for modules/projects where namespaces are manipulated during runtime -# and thus existing member attributes cannot be deduced by static analysis. It -# supports qualified module names, as well as Unix pattern matching. -ignored-modules= - -# Show a hint with possible names when a member name was not found. The aspect -# of finding the hint is based on edit distance. -missing-member-hint=yes - -# The minimum edit distance a name should have in order to be considered a -# similar match for a missing member name. -missing-member-hint-distance=1 - -# The total number of similar names that should be taken in consideration when -# showing a hint for a missing member. -missing-member-max-choices=1 - - -[VARIABLES] - -# List of additional names supposed to be defined in builtins. Remember that -# you should avoid to define new builtins when possible. -additional-builtins= - -# Tells whether unused global variables should be treated as a violation. -allow-global-unused-variables=yes - -# List of strings which can identify a callback function by name. A callback -# name must start or end with one of those strings. -callbacks=cb_,_cb - -# A regular expression matching the name of dummy variables (i.e. expectedly -# not used). -dummy-variables-rgx=_+$|(_[a-zA-Z0-9_]*[a-zA-Z0-9]+?$)|dummy|^ignored_|^unused_ - -# Argument names that match this expression will be ignored. Default to name -# with leading underscore -ignored-argument-names=_.*|^ignored_|^unused_ - -# Tells whether we should check for unused import in __init__ files. -init-import=no - -# List of qualified module names which can have objects that can redefine -# builtins. -redefining-builtins-modules=six.moves,future.builtins - - -[CLASSES] - -# List of method names used to declare (i.e. assign) instance attributes. -defining-attr-methods=__init__,__new__,setUp - -# List of member names, which should be excluded from the protected access -# warning. -exclude-protected=_asdict,_fields,_replace,_source,_make - -# List of valid names for the first argument in a class method. -valid-classmethod-first-arg=cls - -# List of valid names for the first argument in a metaclass class method. -valid-metaclass-classmethod-first-arg=mcs - - -[DESIGN] - -# Maximum number of arguments for function / method -max-args=5 - -# Maximum number of attributes for a class (see R0902). -max-attributes=7 - -# Maximum number of boolean expressions in a if statement -max-bool-expr=5 - -# Maximum number of branch for function / method body -max-branches=12 - -# Maximum number of locals for function / method body -max-locals=15 - -# Maximum number of parents for a class (see R0901). -max-parents=7 - -# Maximum number of public methods for a class (see R0904). -max-public-methods=20 - -# Maximum number of return / yield for function / method body -max-returns=6 - -# Maximum number of statements in function / method body -max-statements=50 - -# Minimum number of public methods for a class (see R0903). -min-public-methods=2 - - -[IMPORTS] - -# Allow wildcard imports from modules that define __all__. -allow-wildcard-with-all=no - -# Analyse import fallback blocks. This can be used to support both Python 2 and -# 3 compatible code, which means that the block might have code that exists -# only in one or another interpreter, leading to false positives when analysed. -analyse-fallback-blocks=no - -# Deprecated modules which should not be used, separated by a comma -deprecated-modules=regsub,TERMIOS,Bastion,rexec - -# Create a graph of external dependencies in the given file (report RP0402 must -# not be disabled) -ext-import-graph= - -# Create a graph of every (i.e. internal and external) dependencies in the -# given file (report RP0402 must not be disabled) -import-graph= - -# Create a graph of internal dependencies in the given file (report RP0402 must -# not be disabled) -int-import-graph= - -# Force import order to recognize a module as part of the standard -# compatibility libraries. -known-standard-library= - -# Force import order to recognize a module as part of a third party library. -known-third-party=enchant - - -[EXCEPTIONS] - -# Exceptions that will emit a warning when being caught. Defaults to -# "Exception" -overgeneral-exceptions=Exception diff --git a/manage_externals/test/Makefile b/manage_externals/test/Makefile deleted file mode 100644 index 293e360757..0000000000 --- a/manage_externals/test/Makefile +++ /dev/null @@ -1,124 +0,0 @@ -python = not-set -verbose = not-set -debug = not-set - -ifneq ($(python), not-set) -PYTHON=$(python) -else -PYTHON=python -endif - -# we need the python path to point one level up to access the package -# and executables -PYPATH=PYTHONPATH=..: - -# common args for running tests -TEST_ARGS=-m unittest discover - -ifeq ($(debug), not-set) - ifeq ($(verbose), not-set) - # summary only output - TEST_ARGS+=--buffer - else - # show individual test summary - TEST_ARGS+=--buffer --verbose - endif -else - # show detailed test output - TEST_ARGS+=--verbose -endif - - -# auto reformat the code -AUTOPEP8=autopep8 -AUTOPEP8_ARGS=--aggressive --in-place - -# run lint -PYLINT=pylint -PYLINT_ARGS=-j 2 --rcfile=.pylint.rc - -# code coverage -COVERAGE=coverage -COVERAGE_ARGS=--rcfile=.coveragerc - -# source files -SRC = \ - ../checkout_externals \ - ../manic/*.py - -CHECKOUT_EXE = ../checkout_externals - -TEST_DIR = . - -README = ../README.md - -# -# testing -# -.PHONY : utest -utest : FORCE - $(PYPATH) $(PYTHON) $(TEST_ARGS) --pattern 'test_unit_*.py' - -.PHONY : stest -stest : FORCE - $(PYPATH) $(PYTHON) $(TEST_ARGS) --pattern 'test_sys_*.py' - -.PHONY : test -test : utest stest - -# -# documentation -# -.PHONY : readme -readme : $(CHECKOUT_EXE) - printf "%s\n\n" "-- AUTOMATICALLY GENERATED FILE. DO NOT EDIT --" > $(README) - printf "%s" '[![Build Status](https://travis-ci.org/ESMCI/manage_externals.svg?branch=master)](https://travis-ci.org/ESMCI/manage_externals)' >> $(README) - printf "%s" '[![Coverage Status](https://coveralls.io/repos/github/ESMCI/manage_externals/badge.svg?branch=master)](https://coveralls.io/github/ESMCI/manage_externals?branch=master)' >> $(README) - printf "\n%s\n" '```' >> $(README) - $(CHECKOUT_EXE) --help >> $(README) - -# -# coding standards -# -.PHONY : style -style : FORCE - $(AUTOPEP8) $(AUTOPEP8_ARGS) --recursive $(SRC) $(TEST_DIR)/test_*.py - -.PHONY : lint -lint : FORCE - $(PYLINT) $(PYLINT_ARGS) $(SRC) $(TEST_DIR)/test_*.py - -.PHONY : stylint -stylint : style lint - -.PHONY : coverage -# Need to use a single coverage run with a single pattern rather than -# using two separate commands with separate patterns for test_unit_*.py -# and test_sys_*.py: The latter clobbers some results from the first -# run, even if we use the --append flag to 'coverage run'. -coverage : FORCE - $(PYPATH) $(COVERAGE) erase - $(PYPATH) $(COVERAGE) run $(COVERAGE_ARGS) $(TEST_ARGS) --pattern 'test_*.py' - $(PYPATH) $(COVERAGE) html - -# -# virtual environment creation -# -.PHONY : env -env : FORCE - $(PYPATH) virtualenv --python $(PYTHON) $@_$(PYTHON) - . $@_$(PYTHON)/bin/activate; pip install -r requirements.txt - -# -# utilites -# -.PHONY : clean -clean : FORCE - -rm -rf *~ *.pyc tmp fake htmlcov - -.PHONY : clobber -clobber : clean - -rm -rf env_* - -FORCE : - diff --git a/manage_externals/test/README.md b/manage_externals/test/README.md deleted file mode 100644 index 1e8f2eaa77..0000000000 --- a/manage_externals/test/README.md +++ /dev/null @@ -1,53 +0,0 @@ -# Testing for checkout_externals - -## Unit tests - -```SH - cd checkout_externals/test - make utest -``` - -## System tests - -```SH - cd checkout_externals/test - make stest -``` - -Example to run a single test: -```SH - cd checkout_externals - python -m unittest test.test_sys_checkout.TestSysCheckout.test_container_simple_required -``` - -## Static analysis - -checkout_externals is difficult to test thoroughly because it relies -on git and svn, and svn requires a live network connection and -repository. Static analysis will help catch bugs in code paths that -are not being executed, but it requires conforming to community -standards and best practices. autopep8 and pylint should be run -regularly for automatic code formatting and linting. - -```SH - cd checkout_externals/test - make lint -``` - -The canonical formatting for the code is whatever autopep8 -generates. All issues identified by pylint should be addressed. - - -## Code coverage - -All changes to the code should include maintaining existing tests and -writing new tests for new or changed functionality. To ensure test -coverage, run the code coverage tool: - -```SH - cd checkout_externals/test - make coverage - open -a Firefox.app htmlcov/index.html -``` - - diff --git a/manage_externals/test/doc/.gitignore b/manage_externals/test/doc/.gitignore deleted file mode 100644 index d4e11e5ea0..0000000000 --- a/manage_externals/test/doc/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -_build - diff --git a/manage_externals/test/doc/Makefile b/manage_externals/test/doc/Makefile deleted file mode 100644 index 18f4d5bf99..0000000000 --- a/manage_externals/test/doc/Makefile +++ /dev/null @@ -1,20 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line. -SPHINXOPTS = -SPHINXBUILD = sphinx-build -SPHINXPROJ = ManageExternals -SOURCEDIR = . -BUILDDIR = _build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) \ No newline at end of file diff --git a/manage_externals/test/doc/conf.py b/manage_externals/test/doc/conf.py deleted file mode 100644 index 469c0b0dc5..0000000000 --- a/manage_externals/test/doc/conf.py +++ /dev/null @@ -1,172 +0,0 @@ -# -*- coding: utf-8 -*- -# -# Manage Externals documentation build configuration file, created by -# sphinx-quickstart on Wed Nov 29 10:53:25 2017. -# -# This file is execfile()d with the current directory set to its -# containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -# -# import os -# import sys -# sys.path.insert(0, os.path.abspath('.')) - - -# -- General configuration ------------------------------------------------ - -# If your documentation needs a minimal Sphinx version, state it here. -# -# needs_sphinx = '1.0' - -# Add any Sphinx extension module names here, as strings. They can be -# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom -# ones. -extensions = ['sphinx.ext.autodoc', - 'sphinx.ext.todo', - 'sphinx.ext.coverage', - 'sphinx.ext.viewcode', - 'sphinx.ext.githubpages'] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ['_templates'] - -# The suffix(es) of source filenames. -# You can specify multiple suffix as a list of string: -# -# source_suffix = ['.rst', '.md'] -source_suffix = '.rst' - -# The master toctree document. -master_doc = 'index' - -# General information about the project. -project = u'Manage Externals' -copyright = u'2017, CSEG at NCAR' -author = u'CSEG at NCAR' - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -version = u'1.0.0' -# The full version, including alpha/beta/rc tags. -release = u'1.0.0' - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -# -# This is also used if you do content translation via gettext catalogs. -# Usually you set "language" from the command line for these cases. -language = None - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -# This patterns also effect to html_static_path and html_extra_path -exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = 'sphinx' - -# If true, `todo` and `todoList` produce output, else they produce nothing. -todo_include_todos = True - - -# -- Options for HTML output ---------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -# -html_theme = 'alabaster' - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -# -# html_theme_options = {} - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] - -# Custom sidebar templates, must be a dictionary that maps document names -# to template names. -# -# This is required for the alabaster theme -# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars -html_sidebars = { - '**': [ - 'relations.html', # needs 'show_related': True theme option to display - 'searchbox.html', - ] -} - - -# -- Options for HTMLHelp output ------------------------------------------ - -# Output file base name for HTML help builder. -htmlhelp_basename = 'ManageExternalsdoc' - - -# -- Options for LaTeX output --------------------------------------------- - -latex_elements = { - # The paper size ('letterpaper' or 'a4paper'). - # - # 'papersize': 'letterpaper', - - # The font size ('10pt', '11pt' or '12pt'). - # - # 'pointsize': '10pt', - - # Additional stuff for the LaTeX preamble. - # - # 'preamble': '', - - # Latex figure (float) alignment - # - # 'figure_align': 'htbp', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, -# author, documentclass [howto, manual, or own class]). -latex_documents = [ - (master_doc, 'ManageExternals.tex', u'Manage Externals Documentation', - u'CSEG at NCAR', 'manual'), -] - - -# -- Options for manual page output --------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - (master_doc, 'manageexternals', u'Manage Externals Documentation', - [author], 1) -] - - -# -- Options for Texinfo output ------------------------------------------- - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - (master_doc, 'ManageExternals', u'Manage Externals Documentation', - author, 'ManageExternals', 'One line description of project.', - 'Miscellaneous'), -] - - - diff --git a/manage_externals/test/doc/develop.rst b/manage_externals/test/doc/develop.rst deleted file mode 100644 index b817b7b093..0000000000 --- a/manage_externals/test/doc/develop.rst +++ /dev/null @@ -1,202 +0,0 @@ -Developer Guidelines -==================== - -The manage externals utilities are a light weight replacement for svn -externals that will work with git repositories pulling in a mixture of -git and svn dependencies. - -Given an externals description and a working copy: - -* *checkout_externals* attempts to make the working copy agree with the - externals description - -* *generate_externals* attempts to make the externals description agree - with the working copy. - -For these operations utilities should: - -* operate consistently across git and svn - -* operate simply with minimal user complexity - -* robustly across a wide range of repository states - -* provide explicit error messages when a problem occurs - -* leave the working copy in a valid state - -The utilities in manage externals are **NOT** generic wrappers around -revision control operations or a replacement for common tasks. Users -are expected to: - -* create branches prior to starting development - -* add remotes and push changes - -* create tags - -* delete branches - -These types of tasks are often highly workflow dependent, e.g. branch -naming conventions may vary between repositories, have the potential -to destroy user data, introduce significant code complexit and 'edge -cases' that are extremely difficult to detect and test, and often -require subtle decision making, especially if a problem occurs. - -Users who want to automate these types are encouraged to create their -own tools. The externals description files are explicitly versioned -and the internal APIs are intended to be stable for these purposes. - -Core Design Principles ------------------------ - -1. Users can, and are actively encouraged to, modify the externals - directories using revision control outside of manage_externals - tools. You can't make any assumptions about the state of the - working copy. Examples: adding a remote, creating a branch, - switching to a branch, deleting the directory entirely. - -2. Give that the user can do anything, the manage externals library - can not preserve state between calls. The only information it can - rely on is what it expectes based on the content of the externals - description file, and what the actual state of the directory tree - is. - -3. Do *not* do anything that will possibly destroy user data! - - a. Do not remove files from the file system. We are operating on - user supplied input. If you don't call 'rm', you can't - accidentally remove the user's data. Thinking of calling - ``shutil.rmtree(user_input)``? What if the user accidentally - specified user_input such that it resolves to their home - directory.... Yeah. Don't go there. - - b. Rely on git and svn to do their job as much as possible. Don't - duplicate functionality. Examples: - - i. We require the working copies to be 'clean' as reported by - ``git status`` and ``svn status``. What if there are misc - editor files floating around that prevent an update? Use the - git and svn ignore functionality so they are not - reported. Don't try to remove them from manage_externals or - determine if they are 'safe' to ignore. - - ii. Do not use '--force'. Ever. This is a sign you are doing - something dangerous, it may not be what the user - wants. Remember, they are encouraged to modify their repo. - -4. There are often multiple ways to obtain a particular piece of - information from git. Scraping screen output is brittle and - generally not considered a stable API across different versions of - git. Given a choice between: - - a. a lower level git 'plumbing' command that processes a - specific request and returns a sucess/failure status. - - b. high level git command that produces a bunch of output - that must be processed. - - We always prefer the former. It almost always involves - writing and maintaining less code and is more likely to be - stable. - -5. Backward compatibility is critical. We have *nested* - repositories. They are trivially easy to change versions. They may - have very different versions of the top level manage_externals. The - ability to read and work with old model description files is - critical to avoid problems for users. We also have automated tools - (testdb) that must generate and read external description - files. Backward compatibility will make staging changes vastly - simpler. - -Model Users ------------ - -Consider the needs of the following model userswhen developing manage_externals: - -* Users who will checkout the code once, and never change versions. - -* Users who will checkout the code once, then work for several years, - never updating. before trying to update or request integration. - -* Users develope code but do not use revision control beyond the - initial checkout. If they have modified or untracked files in the - repo, they may be irreplacable. Don't destroy user data. - -* Intermediate users who are working with multiple repos or branches - on a regular basis. They may only use manage_externals weekly or - monthly. Keep the user interface and documentation simple and - explicit. The more command line options they have to remember or - look up, the more frustrated they git. - -* Software engineers who use the tools multiple times a day. It should - get out of their way. - -User Interface --------------- - -Basic operation for the most standard use cases should be kept as -simple as possible. Many users will only rarely run the manage -utilities. Even advanced users don't like reading a lot of help -documentation or struggling to remember commands and piece together -what they need to run. Having many command line options, even if not -needed, is exteremly frustrating and overwhelming for most users. A few -simple, explicitly named commands are better than a single command -with many options. - -How will users get help if something goes wrong? This is a custom, -one-off solution. Searching the internet for manage_externals, will -only return the user doc for this project at best. There isn't likely -to be a stackoverflow question or blog post where someone else already -answered a user's question. And very few people outside this community -will be able to provide help if something goes wrong. The sooner we -kick users out of these utilities and into standard version control -tools, the better off they are going to be if they run into a problem. - -Repositories ------------- - -There are three basic types of repositories that must be considered: - -* container repositories - repositories that are always top level - repositories, and have a group of externals that must be managed. - -* simple repositories - repositories that are externals to another - repository, and do not have any of their own externals that will be - managed. - -* mixed use repositories - repositories that can act as a top level - container repository or as an external to a top level - container. They may also have their own sub-externals that are - required. They may have different externals needs depening on - whether they are top level or not. - -Repositories must be able to checkout and switch to both branches and -tags. - -Development -=========== - -The functionality to manage externals is broken into a library of core -functionality and applications built with the library. - -The core library is called 'manic', pseduo-homophone of (man)age -(ex)ternals that is: short, pronounceable and spell-checkable. It is -also no more or less meaningful to an unfamiliar user than a random -jumble of letters forming an acronym. - -The core architecture of manic is: - -* externals description - an abstract description on an external, - including of how to obtain it, where to obtain it, where it goes in - the working tree. - -* externals - the software object representing an external. - -* source trees - collection of externals - -* repository wrappers - object oriented wrappers around repository - operations. So the higher level management of the soure tree and - external does not have to be concerned with how a particular - external is obtained and managed. - diff --git a/manage_externals/test/doc/index.rst b/manage_externals/test/doc/index.rst deleted file mode 100644 index 9ab287ad8c..0000000000 --- a/manage_externals/test/doc/index.rst +++ /dev/null @@ -1,22 +0,0 @@ -.. Manage Externals documentation master file, created by - sphinx-quickstart on Wed Nov 29 10:53:25 2017. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to Manage Externals's documentation! -============================================ - -.. toctree:: - :maxdepth: 2 - :caption: Contents: - - - develop.rst - testing.rst - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` diff --git a/manage_externals/test/doc/testing.rst b/manage_externals/test/doc/testing.rst deleted file mode 100644 index 623f0e431c..0000000000 --- a/manage_externals/test/doc/testing.rst +++ /dev/null @@ -1,123 +0,0 @@ -Testing -======= - -The manage_externals package has an automated test suite. All pull -requests are expected to pass 100% of the automated tests, as well as -be pep8 and lint 'clean' and maintain approximately constant (at a -minimum) level of code coverage. - -Quick Start ------------ - -Do nothing approach -~~~~~~~~~~~~~~~~~~~ - -When you create a pull request on GitHub, Travis-CI continuous -integration testing will run the test suite in both python2 and -python3. Test results, lint results, and code coverage results are -available online. - -Do something approach -~~~~~~~~~~~~~~~~~~~~~ - -In the test directory, run: - -.. code-block:: shell - - make env - make lint - make test - make coverage - - -Automated Testing ------------------ - -The manage_externals manic library and executables are developed to be -python2 and python3 compatible using only the standard library. The -test suites meet the same requirements. But additional tools are -required to provide lint and code coverage metrics and generate -documentation. The requirements are maintained in the requirements.txt -file, and can be automatically installed into an isolated environment -via Makefile. - -Bootstrap requirements: - -* python2 - version 2.7.x or later - -* python3 - version 3.6 tested other versions may work - -* pip and virtualenv for python2 and python3 - -Note: all make rules can be of the form ``make python=pythonX rule`` -or ``make rule`` depending if you want to use the default system -python or specify a specific version. - -The Makefile in the test directory has the following rules: - -* ``make python=pythonX env`` - create a python virtual environment - for python2 or python3 and install all required packages. These - packages are required to run lint or coverage. - -* ``make style`` - runs autopep8 - -* ``make lint`` - runs autopep8 and pylint - -* ``make test`` - run the full test suite - -* ``make utest`` - run jus the unit tests - -* ``make stest`` - run jus the system integration tests - -* ``make coverage`` - run the full test suite through the code - coverage tool and generate an html report. - -* ``make readme`` - automatically generate the README files. - -* ``make clean`` - remove editor and pyc files - -* ``make clobber`` - remove all generated test files, including - virtual environments, coverage reports, and temporary test - repository directories. - -Unit Tests ----------- - -Unit tests are probably not 'true unit tests' for the pedantic, but -are pragmatic unit tests. They cover small practicle code blocks: -functions, class methods, and groups of functions and class methods. - -System Integration Tests ------------------------- - -NOTE(bja, 2017-11) The systems integration tests currently do not include svn repositories. - -The manage_externals package is extremely tedious and error prone to test manually. - -Combinations that must be tested to ensure basic functionality are: - -* container repository pulling in simple externals - -* container repository pulling in mixed externals with sub-externals. - -* mixed repository acting as a container, pulling in simple externals and sub-externals - -Automatic system tests are handled the same way manual testing is done: - -* clone a test repository - -* create an externals description file for the test - -* run the executable with the desired args - -* check the results - -* potentially modify the repo (checkout a different branch) - -* rerun and test - -* etc - -The automated system stores small test repositories in the main repo -by adding them as bare repositories. These repos are cloned via a -subprocess call to git and manipulated during the tests. diff --git a/manage_externals/test/repos/README.md b/manage_externals/test/repos/README.md deleted file mode 100644 index 026b684ea3..0000000000 --- a/manage_externals/test/repos/README.md +++ /dev/null @@ -1,33 +0,0 @@ -Git and svn repositories for testing git and svn-related behavior. For usage and terminology notes, see test/test_sys_checkout.py. - -For git repos: To list files and view file contents at HEAD: -``` -cd -git ls-tree --full-tree -r --name-only HEAD -git cat-file -p HEAD: -``` - -File contents at a glance: -``` -container.git/ - readme.txt - -simple-ext.git/ - (has branches: feature2, feature3) - (has tags: tag1, tag2) - readme.txt - simple_subdir/subdir_file.txt - -simple-ext-fork.git/ - (has tags: abandoned-feature, forked-feature-v1, tag1) - (has branch: feature2) - readme.txt - -mixed-cont-ext.git/ - (has branch: new-feature) - readme.txt - sub-externals.cfg ('simp_branch' section refers to 'feature2' branch in simple-ext.git/ repo) - -error/ - (no git repo here, just a readme.txt in the clear) -``` diff --git a/manage_externals/test/repos/container.git/HEAD b/manage_externals/test/repos/container.git/HEAD deleted file mode 100644 index cb089cd89a..0000000000 --- a/manage_externals/test/repos/container.git/HEAD +++ /dev/null @@ -1 +0,0 @@ -ref: refs/heads/master diff --git a/manage_externals/test/repos/container.git/config b/manage_externals/test/repos/container.git/config deleted file mode 100644 index e6da231579..0000000000 --- a/manage_externals/test/repos/container.git/config +++ /dev/null @@ -1,6 +0,0 @@ -[core] - repositoryformatversion = 0 - filemode = true - bare = true - ignorecase = true - precomposeunicode = true diff --git a/manage_externals/test/repos/container.git/description b/manage_externals/test/repos/container.git/description deleted file mode 100644 index 498b267a8c..0000000000 --- a/manage_externals/test/repos/container.git/description +++ /dev/null @@ -1 +0,0 @@ -Unnamed repository; edit this file 'description' to name the repository. diff --git a/manage_externals/test/repos/container.git/info/exclude b/manage_externals/test/repos/container.git/info/exclude deleted file mode 100644 index a5196d1be8..0000000000 --- a/manage_externals/test/repos/container.git/info/exclude +++ /dev/null @@ -1,6 +0,0 @@ -# git ls-files --others --exclude-from=.git/info/exclude -# Lines that start with '#' are comments. -# For a project mostly in C, the following would be a good set of -# exclude patterns (uncomment them if you want to use them): -# *.[oa] -# *~ diff --git a/manage_externals/test/repos/container.git/objects/41/1de5d96ee418c1c55f3e96e6e6e7c06bb95801 b/manage_externals/test/repos/container.git/objects/41/1de5d96ee418c1c55f3e96e6e6e7c06bb95801 deleted file mode 100644 index f65234e17f32800b1be0aa9908cc706458b14605..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 133 zcmV;00DAv;0acB$4#OY}L_6~pma=t7)Fr=DfpLNr2P1F?mVSF_r3_t8x_fuJAR6GY zuD1yyS3=Xu)WDKA@Ra});Xx7fWf1zv2~1TS@=422pQw4`eHcB9X3EwU=O)-GQ}s5s nqUZ%S7HaN3i|$`ck;m7Sz6S{Y_}`UoN%K{iOGozsJ+C?sZtFeC diff --git a/manage_externals/test/repos/container.git/objects/71/5b8f3e4afe1802a178e1d603af404ba45d59de b/manage_externals/test/repos/container.git/objects/71/5b8f3e4afe1802a178e1d603af404ba45d59de deleted file mode 100644 index 9759965b1ba440f1899216c1c82c0780fb65f46e..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 136 zcmV;30C)d*0hNtQ3c@fDKwak)a{8g?ULFizQ5yOj!O$#BY{3QX>9e{j4e8<)

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a/manage_externals/test/repos/mixed-cont-ext.git/objects/95/80ecc12f16334ce44e42287d5d46f927bb7b75 +++ /dev/null @@ -1 +0,0 @@ -x•ŽKNÄ0Yç½cÅÈŸLlK7é´Ÿ5#{ä´ŽO˜°z›ªÒ“¶mW%Ó“v€8¹³äÈÁ&¶eFö²òìÙ±$/¦äéÆUÉžÝz°RœÎJ¶¡”%ZY“ |YS“ìÄC/­Ó'*}ÔÜA¯ü7ïC¸ŸÇÛ‘²ÉÏ‹1‘^L0f’Ç7Åÿ¬©cì übå/ª¼Jo5½-Å®;íî Üê³Ò…¿AÚH:XA÷D×Z:ïÚ‡èè8M¿¸^æ \ No newline at end of file diff --git a/manage_externals/test/repos/mixed-cont-ext.git/objects/a9/288dcd8a719a1f4ed3cba43a2a387ae7cd60fd b/manage_externals/test/repos/mixed-cont-ext.git/objects/a9/288dcd8a719a1f4ed3cba43a2a387ae7cd60fd deleted file mode 100644 index 73e7cbfbc8e106cee027f798dcb163ec6c5d21e6..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 130 zcmV-|0Db>>0V^p=O;s>7GGs6`FfcPQQP4}zEXhpI%P&f0aFl&|Gw+GS!K3kZ)1Ezh zejs~i1S3>cQEFmJZmM2MMG3=S(WPsHSWJ^Nk8w52YBee>u{sG;Ra}~+n_5wlT9lWV kQ>>Sqmd?O9-L+qLU;NqZBmPS=oA+@UXed_#01>J$$h2KJZU6uP diff --git a/manage_externals/test/repos/mixed-cont-ext.git/objects/e8/ea32a11d30ee703f6f661ae7c2376f4ab84d38 b/manage_externals/test/repos/mixed-cont-ext.git/objects/e8/ea32a11d30ee703f6f661ae7c2376f4ab84d38 deleted file mode 100644 index 189ed85bb3c8b8642ae353d29a759f67040b5786..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 130 zcmV-|0Db>>0V^p=O;s>7GGs6`FfcPQQP4}zEXhpI%P&f0aFl&|Gw+GS!K3kZ)1Ezh zejs~i1S3>cQEFmJZmM2MMG3=S(WPsHSWJ^Nk8w52YBee>u{sG;Ra}~+n_5wlT9lWV kQ>>Sqmd?Q7Ty=.p¢ˆA -!ìÜ  w4ݵ¡¸Qªé€Øú=©Ã¤á¨ÏZ9ü0„þûkÌ éžG)* \ No newline at end of file diff --git a/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/master b/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/master deleted file mode 100644 index 1e0eef1ea3..0000000000 --- a/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/master +++ /dev/null @@ -1 +0,0 @@ -6fc379457ecb4e576a13c7610ae1fa73f845ee6a diff --git a/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/new-feature b/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/new-feature deleted file mode 100644 index 607e80d1bc..0000000000 --- a/manage_externals/test/repos/mixed-cont-ext.git/refs/heads/new-feature +++ /dev/null @@ -1 +0,0 @@ -9580ecc12f16334ce44e42287d5d46f927bb7b75 diff --git a/manage_externals/test/repos/simple-ext-fork.git/HEAD b/manage_externals/test/repos/simple-ext-fork.git/HEAD deleted file mode 100644 index cb089cd89a..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/HEAD +++ /dev/null @@ -1 +0,0 @@ -ref: refs/heads/master diff --git a/manage_externals/test/repos/simple-ext-fork.git/config b/manage_externals/test/repos/simple-ext-fork.git/config deleted file mode 100644 index 04eba17870..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/config +++ /dev/null @@ -1,8 +0,0 @@ -[core] - repositoryformatversion = 0 - filemode = true - bare = true - ignorecase = true - precomposeunicode = true -[remote "origin"] - url = /Users/andreb/projects/ncar/git-conversion/checkout-model-dev/cesm-demo-externals/manage_externals/test/repos/simple-ext.git diff --git a/manage_externals/test/repos/simple-ext-fork.git/description b/manage_externals/test/repos/simple-ext-fork.git/description deleted file mode 100644 index 498b267a8c..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/description +++ /dev/null @@ -1 +0,0 @@ -Unnamed repository; edit this file 'description' to name the repository. diff --git a/manage_externals/test/repos/simple-ext-fork.git/info/exclude b/manage_externals/test/repos/simple-ext-fork.git/info/exclude deleted file mode 100644 index a5196d1be8..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/info/exclude +++ /dev/null @@ -1,6 +0,0 @@ -# git ls-files --others --exclude-from=.git/info/exclude -# Lines that start with '#' are comments. -# For a project mostly in C, the following would be a good set of -# exclude patterns (uncomment them if you want to use them): 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a/manage_externals/test/repos/simple-ext-fork.git/objects/a4/2fe9144f5707bc1e9515ce1b44681f7aba6f95 b/manage_externals/test/repos/simple-ext-fork.git/objects/a4/2fe9144f5707bc1e9515ce1b44681f7aba6f95 deleted file mode 100644 index d8ba654548..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/objects/a4/2fe9144f5707bc1e9515ce1b44681f7aba6f95 +++ /dev/null @@ -1,3 +0,0 @@ -xUÌ[ -Â0…aŸ³ŠÙ@%Is+ˆ¨;™¤c/˜DÂq÷VðÅ×Ã>Æ ”w‡WJ Ú˜>8ò!¤!&'ƒS=)í±×CòF+ÑI2‚ßO‚Ts^Xðn`Ä2ÖBcw'ä­Ñw¨Á -\ËØNqÝ›F—)ãò8îç3(«¬Œ2:é¥ÿü0x-<×!6,i ª9 \ No newline at end of file diff --git a/manage_externals/test/repos/simple-ext-fork.git/objects/b9/3737be3ea6b19f6255983748a0a0f4d622f936 b/manage_externals/test/repos/simple-ext-fork.git/objects/b9/3737be3ea6b19f6255983748a0a0f4d622f936 deleted file mode 100644 index 9b40a0afa00b93a318cd503d3b29db1162978b03..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 89 zcmV-f0H*(V0V^p=O;s>AV=y!@Ff%bx&`ZxO$xP47FG^)_lznD—}ÂD>£Nƒv“{ŠZ¼M˜I…¥?jƒ‹Ìpžs8ÄgøÓ½„qÚ¥ZŽ€qo j†­f­ÕJ×{]þÕµÓ¥®¥Om/¨3Ü$ô¥‰Q_@ÞH© \ No newline at end of file diff --git a/manage_externals/test/repos/simple-ext-fork.git/packed-refs b/manage_externals/test/repos/simple-ext-fork.git/packed-refs deleted file mode 100644 index b8f9e86308..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/packed-refs +++ /dev/null @@ -1,5 +0,0 @@ -# pack-refs with: peeled fully-peeled sorted -36418b4e5665956a90725c9a1b5a8e551c5f3d48 refs/heads/feature2 -9b75494003deca69527bb64bcaa352e801611dd2 refs/heads/master -11a76e3d9a67313dec7ce1230852ab5c86352c5c refs/tags/tag1 -^9b75494003deca69527bb64bcaa352e801611dd2 diff --git a/manage_externals/test/repos/simple-ext-fork.git/refs/heads/feature2 b/manage_externals/test/repos/simple-ext-fork.git/refs/heads/feature2 deleted file mode 100644 index d223b0362d..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/refs/heads/feature2 +++ /dev/null @@ -1 +0,0 @@ -f268d4e56d067da9bd1d85e55bdc40a8bd2b0bca diff --git a/manage_externals/test/repos/simple-ext-fork.git/refs/tags/abandoned-feature b/manage_externals/test/repos/simple-ext-fork.git/refs/tags/abandoned-feature deleted file mode 100644 index 8a18bf08e9..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/refs/tags/abandoned-feature +++ /dev/null @@ -1 +0,0 @@ -a42fe9144f5707bc1e9515ce1b44681f7aba6f95 diff --git a/manage_externals/test/repos/simple-ext-fork.git/refs/tags/forked-feature-v1 b/manage_externals/test/repos/simple-ext-fork.git/refs/tags/forked-feature-v1 deleted file mode 100644 index 2764b552d5..0000000000 --- a/manage_externals/test/repos/simple-ext-fork.git/refs/tags/forked-feature-v1 +++ /dev/null @@ -1 +0,0 @@ -8d2b3b35126224c975d23f109aa1e3cbac452989 diff --git a/manage_externals/test/repos/simple-ext.git/HEAD b/manage_externals/test/repos/simple-ext.git/HEAD deleted file mode 100644 index cb089cd89a..0000000000 --- a/manage_externals/test/repos/simple-ext.git/HEAD +++ /dev/null @@ -1 +0,0 @@ -ref: refs/heads/master diff --git a/manage_externals/test/repos/simple-ext.git/config b/manage_externals/test/repos/simple-ext.git/config deleted file mode 100644 index e6da231579..0000000000 --- a/manage_externals/test/repos/simple-ext.git/config +++ /dev/null @@ -1,6 +0,0 @@ -[core] - repositoryformatversion = 0 - filemode = true - bare = true - ignorecase = true - precomposeunicode = true diff --git a/manage_externals/test/repos/simple-ext.git/description b/manage_externals/test/repos/simple-ext.git/description deleted file mode 100644 index 498b267a8c..0000000000 --- a/manage_externals/test/repos/simple-ext.git/description +++ /dev/null @@ -1 +0,0 @@ -Unnamed repository; edit this file 'description' to name the repository. diff --git a/manage_externals/test/repos/simple-ext.git/info/exclude b/manage_externals/test/repos/simple-ext.git/info/exclude deleted file mode 100644 index a5196d1be8..0000000000 --- a/manage_externals/test/repos/simple-ext.git/info/exclude +++ /dev/null @@ -1,6 +0,0 @@ -# git ls-files --others --exclude-from=.git/info/exclude -# Lines that start with '#' are comments. -# For a project mostly in C, the following would be a good set of -# exclude patterns (uncomment them if you want to use them): -# *.[oa] -# *~ diff --git a/manage_externals/test/repos/simple-ext.git/objects/00/fd13e76189f9134b0506b4b8ed3172723b467f b/manage_externals/test/repos/simple-ext.git/objects/00/fd13e76189f9134b0506b4b8ed3172723b467f deleted file mode 100644 index ae28c037e5e8773bab7a7f9b6b050a01c3c8402a..0000000000000000000000000000000000000000 GIT binary patch literal 0 HcmV?d00001 literal 89 zcmV-f0H*(V0V^p=O;s>AV=y!@Ff%bx&`ZxO$xP47FG^)_lznbW_*ltIGSP}@rN;eRaRvTe4jec)&9#mV ztc{ztsDi^RDN|POQ7IsM3R)Zn^fb6Ap%fNDG*4c1YCyeUO2}@P$+4Hjj2b9dvLb3- zmJ-WQ2E*@mn-@6i1g9x43VXTpcO0*k$48gudH@`(^)|-1gKbZJZ&teIHT_#Om*271 ST(#ZC=?eOIX=gtC)=0=UK}@j# diff --git 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binary patch literal 0 HcmV?d00001 literal 816 zcmZvZJ!lj`6vt;bpA3nm2sW<~jBwfc+L_sFOu`))jUhw{0gGh577vfyac(dHi+~?R zh?R}CT|}_e+9r*qV5N;MStC{G3)m;lNk zCm~lv(?C<68Ar-%YL%o`uYzC#rkyZdVR9kD9Q-!%}%S;O#unUwLYMU_)@exaSbTJeGis^rnsBF zpQ$A6r{xuTL@SSJeWQcholp+qxI~k*M^FFKr;u_G6ohjsvpQAEc$GQHnKxDmExDoA zqy#EZIZ5|4d3k=%Gb>dAc}$Wl&XYP%bKGo< zTmjWejYqZH7n7Q%0^8yGT2lbUjl12Rz=7w$2rz4bdULXUmfC*4ic;URV zT5%(!r#bby^on`qSY{66?ef&aVF)RMbPpw2dC8>a+6zOarB*P`g_V_4QdROm3)2?cKX5He8X8kD zRTa09dUI>+4($Ie?{8&&x)?7E=6hH1%;vc$isp`@N5_6ekGpR>52FX2McUt&KhAE3 z8yY={3bg&={dRN#qtCB?emH(VI)R>Tecg&qWAyFm%XhPPH2SpjWe4}>(DxsApLgH< zK6?@&t~A)(Gf_HKN~e|J&g9-2E__xI=82{tXa=RNLR*{|XCxC^W?VX{y(YOLf>dnb E4; /dev/null || exit 1 - -# Check that the author of this commit has the rights to perform -# the commit on the files and directories being modified. -commit-access-control.pl "$REPOS" "$TXN" commit-access-control.cfg || exit 1 - -# All checks passed, so allow the commit. -exit 0 diff --git a/manage_externals/test/repos/simple-ext.svn/hooks/pre-lock.tmpl b/manage_externals/test/repos/simple-ext.svn/hooks/pre-lock.tmpl deleted file mode 100755 index 148582a689..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/hooks/pre-lock.tmpl +++ /dev/null @@ -1,95 +0,0 @@ -#!/bin/sh - -# PRE-LOCK HOOK -# -# The pre-lock hook is invoked before an exclusive lock is -# created. Subversion runs this hook by invoking a program -# (script, executable, binary, etc.) named 'pre-lock' (for which -# this file is a template), with the following ordered arguments: -# -# [1] REPOS-PATH (the path to this repository) -# [2] PATH (the path in the repository about to be locked) -# [3] USER (the user creating the lock) -# [4] COMMENT (the comment of the lock) -# [5] STEAL-LOCK (1 if the user is trying to steal the lock, else 0) -# -# If the hook program outputs anything on stdout, the output string will -# be used as the lock token for this lock operation. If you choose to use -# this feature, you must guarantee the tokens generated are unique across -# the repository each time. -# -# If the hook program exits with success, the lock is created; but -# if it exits with failure (non-zero), the lock action is aborted -# and STDERR is returned to the client. -# -# The default working directory for the invocation is undefined, so -# the program should set one explicitly if it cares. -# -# On a Unix system, the normal procedure is to have 'pre-lock' -# invoke other programs to do the real work, though it may do the -# work itself too. -# -# Note that 'pre-lock' must be executable by the user(s) who will -# invoke it (typically the user httpd runs as), and that user must -# have filesystem-level permission to access the repository. -# -# On a Windows system, you should name the hook program -# 'pre-lock.bat' or 'pre-lock.exe', -# but the basic idea is the same. -# -# The hook program runs in an empty environment, unless the server is -# explicitly configured otherwise. For example, a common problem is for -# the PATH environment variable to not be set to its usual value, so -# that subprograms fail to launch unless invoked via absolute path. -# If you're having unexpected problems with a hook program, the -# culprit may be unusual (or missing) environment variables. -# -# CAUTION: -# For security reasons, you MUST always properly quote arguments when -# you use them, as those arguments could contain whitespace or other -# problematic characters. Additionally, you should delimit the list -# of options with "--" before passing the arguments, so malicious -# clients cannot bootleg unexpected options to the commands your -# script aims to execute. -# For similar reasons, you should also add a trailing @ to URLs which -# are passed to SVN commands accepting URLs with peg revisions. -# -# Here is an example hook script, for a Unix /bin/sh interpreter. -# For more examples and pre-written hooks, see those in -# the Subversion repository at -# http://svn.apache.org/repos/asf/subversion/trunk/tools/hook-scripts/ and -# http://svn.apache.org/repos/asf/subversion/trunk/contrib/hook-scripts/ - - -REPOS="$1" -PATH="$2" -USER="$3" -COMMENT="$4" -STEAL="$5" - -# If a lock exists and is owned by a different person, don't allow it -# to be stolen (e.g., with 'svn lock --force ...'). - -# (Maybe this script could send email to the lock owner?) -SVNLOOK=/opt/homebrew/Cellar/subversion/1.14.2_1/bin/svnlook -GREP=/bin/grep -SED=/bin/sed - -LOCK_OWNER=`$SVNLOOK lock "$REPOS" "$PATH" | \ - $GREP '^Owner: ' | $SED 's/Owner: //'` - -# If we get no result from svnlook, there's no lock, allow the lock to -# happen: -if [ "$LOCK_OWNER" = "" ]; then - exit 0 -fi - -# If the person locking matches the lock's owner, allow the lock to -# happen: -if [ "$LOCK_OWNER" = "$USER" ]; then - exit 0 -fi - -# Otherwise, we've got an owner mismatch, so return failure: -echo "Error: $PATH already locked by ${LOCK_OWNER}." 1>&2 -exit 1 diff --git a/manage_externals/test/repos/simple-ext.svn/hooks/pre-revprop-change.tmpl b/manage_externals/test/repos/simple-ext.svn/hooks/pre-revprop-change.tmpl deleted file mode 100755 index 8b065d7c79..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/hooks/pre-revprop-change.tmpl +++ /dev/null @@ -1,79 +0,0 @@ -#!/bin/sh - -# PRE-REVPROP-CHANGE HOOK -# -# The pre-revprop-change hook is invoked before a revision property -# is added, modified or deleted. Subversion runs this hook by invoking -# a program (script, executable, binary, etc.) named 'pre-revprop-change' -# (for which this file is a template), with the following ordered -# arguments: -# -# [1] REPOS-PATH (the path to this repository) -# [2] REV (the revision being tweaked) -# [3] USER (the username of the person tweaking the property) -# [4] PROPNAME (the property being set on the revision) -# [5] ACTION (the property is being 'A'dded, 'M'odified, or 'D'eleted) -# -# [STDIN] PROPVAL ** the new property value is passed via STDIN. -# -# If the hook program exits with success, the propchange happens; but -# if it exits with failure (non-zero), the propchange doesn't happen. -# The hook program can use the 'svnlook' utility to examine the -# existing value of the revision property. -# -# WARNING: unlike other hooks, this hook MUST exist for revision -# properties to be changed. If the hook does not exist, Subversion -# will behave as if the hook were present, but failed. The reason -# for this is that revision properties are UNVERSIONED, meaning that -# a successful propchange is destructive; the old value is gone -# forever. We recommend the hook back up the old value somewhere. -# -# The default working directory for the invocation is undefined, so -# the program should set one explicitly if it cares. -# -# On a Unix system, the normal procedure is to have 'pre-revprop-change' -# invoke other programs to do the real work, though it may do the -# work itself too. -# -# Note that 'pre-revprop-change' must be executable by the user(s) who will -# invoke it (typically the user httpd runs as), and that user must -# have filesystem-level permission to access the repository. -# -# On a Windows system, you should name the hook program -# 'pre-revprop-change.bat' or 'pre-revprop-change.exe', -# but the basic idea is the same. -# -# The hook program runs in an empty environment, unless the server is -# explicitly configured otherwise. For example, a common problem is for -# the PATH environment variable to not be set to its usual value, so -# that subprograms fail to launch unless invoked via absolute path. -# If you're having unexpected problems with a hook program, the -# culprit may be unusual (or missing) environment variables. -# -# CAUTION: -# For security reasons, you MUST always properly quote arguments when -# you use them, as those arguments could contain whitespace or other -# problematic characters. Additionally, you should delimit the list -# of options with "--" before passing the arguments, so malicious -# clients cannot bootleg unexpected options to the commands your -# script aims to execute. -# For similar reasons, you should also add a trailing @ to URLs which -# are passed to SVN commands accepting URLs with peg revisions. -# -# Here is an example hook script, for a Unix /bin/sh interpreter. -# For more examples and pre-written hooks, see those in -# the Subversion repository at -# http://svn.apache.org/repos/asf/subversion/trunk/tools/hook-scripts/ and -# http://svn.apache.org/repos/asf/subversion/trunk/contrib/hook-scripts/ - - -REPOS="$1" -REV="$2" -USER="$3" -PROPNAME="$4" -ACTION="$5" - -if [ "$ACTION" = "M" -a "$PROPNAME" = "svn:log" ]; then exit 0; fi - -echo "Changing revision properties other than svn:log is prohibited" >&2 -exit 1 diff --git a/manage_externals/test/repos/simple-ext.svn/hooks/pre-unlock.tmpl b/manage_externals/test/repos/simple-ext.svn/hooks/pre-unlock.tmpl deleted file mode 100755 index 9ba99d071b..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/hooks/pre-unlock.tmpl +++ /dev/null @@ -1,87 +0,0 @@ -#!/bin/sh - -# PRE-UNLOCK HOOK -# -# The pre-unlock hook is invoked before an exclusive lock is -# destroyed. Subversion runs this hook by invoking a program -# (script, executable, binary, etc.) named 'pre-unlock' (for which -# this file is a template), with the following ordered arguments: -# -# [1] REPOS-PATH (the path to this repository) -# [2] PATH (the path in the repository about to be unlocked) -# [3] USER (the user destroying the lock) -# [4] TOKEN (the lock token to be destroyed) -# [5] BREAK-UNLOCK (1 if the user is breaking the lock, else 0) -# -# If the hook program exits with success, the lock is destroyed; but -# if it exits with failure (non-zero), the unlock action is aborted -# and STDERR is returned to the client. -# -# The default working directory for the invocation is undefined, so -# the program should set one explicitly if it cares. -# -# On a Unix system, the normal procedure is to have 'pre-unlock' -# invoke other programs to do the real work, though it may do the -# work itself too. -# -# Note that 'pre-unlock' must be executable by the user(s) who will -# invoke it (typically the user httpd runs as), and that user must -# have filesystem-level permission to access the repository. -# -# On a Windows system, you should name the hook program -# 'pre-unlock.bat' or 'pre-unlock.exe', -# but the basic idea is the same. -# -# The hook program runs in an empty environment, unless the server is -# explicitly configured otherwise. For example, a common problem is for -# the PATH environment variable to not be set to its usual value, so -# that subprograms fail to launch unless invoked via absolute path. -# If you're having unexpected problems with a hook program, the -# culprit may be unusual (or missing) environment variables. -# -# CAUTION: -# For security reasons, you MUST always properly quote arguments when -# you use them, as those arguments could contain whitespace or other -# problematic characters. Additionally, you should delimit the list -# of options with "--" before passing the arguments, so malicious -# clients cannot bootleg unexpected options to the commands your -# script aims to execute. -# For similar reasons, you should also add a trailing @ to URLs which -# are passed to SVN commands accepting URLs with peg revisions. -# -# Here is an example hook script, for a Unix /bin/sh interpreter. -# For more examples and pre-written hooks, see those in -# the Subversion repository at -# http://svn.apache.org/repos/asf/subversion/trunk/tools/hook-scripts/ and -# http://svn.apache.org/repos/asf/subversion/trunk/contrib/hook-scripts/ - - -REPOS="$1" -PATH="$2" -USER="$3" -TOKEN="$4" -BREAK="$5" - -# If a lock is owned by a different person, don't allow it be broken. -# (Maybe this script could send email to the lock owner?) - -SVNLOOK=/opt/homebrew/Cellar/subversion/1.14.2_1/bin/svnlook -GREP=/bin/grep -SED=/bin/sed - -LOCK_OWNER=`$SVNLOOK lock "$REPOS" "$PATH" | \ - $GREP '^Owner: ' | $SED 's/Owner: //'` - -# If we get no result from svnlook, there's no lock, return success: -if [ "$LOCK_OWNER" = "" ]; then - exit 0 -fi - -# If the person unlocking matches the lock's owner, return success: -if [ "$LOCK_OWNER" = "$USER" ]; then - exit 0 -fi - -# Otherwise, we've got an owner mismatch, so return failure: -echo "Error: $PATH locked by ${LOCK_OWNER}." 1>&2 -exit 1 diff --git a/manage_externals/test/repos/simple-ext.svn/hooks/start-commit.tmpl b/manage_externals/test/repos/simple-ext.svn/hooks/start-commit.tmpl deleted file mode 100755 index 1395e8315a..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/hooks/start-commit.tmpl +++ /dev/null @@ -1,81 +0,0 @@ -#!/bin/sh - -# START-COMMIT HOOK -# -# The start-commit hook is invoked immediately after a Subversion txn is -# created and populated with initial revprops in the process of doing a -# commit. Subversion runs this hook by invoking a program (script, -# executable, binary, etc.) named 'start-commit' (for which this file -# is a template) with the following ordered arguments: -# -# [1] REPOS-PATH (the path to this repository) -# [2] USER (the authenticated user attempting to commit) -# [3] CAPABILITIES (a colon-separated list of capabilities reported -# by the client; see note below) -# [4] TXN-NAME (the name of the commit txn just created) -# -# Note: The CAPABILITIES parameter is new in Subversion 1.5, and 1.5 -# clients will typically report at least the "mergeinfo" capability. -# If there are other capabilities, then the list is colon-separated, -# e.g.: "mergeinfo:some-other-capability" (the order is undefined). -# -# The list is self-reported by the client. Therefore, you should not -# make security assumptions based on the capabilities list, nor should -# you assume that clients reliably report every capability they have. -# -# Note: The TXN-NAME parameter is new in Subversion 1.8. Prior to version -# 1.8, the start-commit hook was invoked before the commit txn was even -# created, so the ability to inspect the commit txn and its metadata from -# within the start-commit hook was not possible. -# -# If the hook program exits with success, the commit continues; but -# if it exits with failure (non-zero), the commit is stopped before -# a Subversion txn is created, and STDERR is returned to the client. -# -# The default working directory for the invocation is undefined, so -# the program should set one explicitly if it cares. -# -# On a Unix system, the normal procedure is to have 'start-commit' -# invoke other programs to do the real work, though it may do the -# work itself too. -# -# Note that 'start-commit' must be executable by the user(s) who will -# invoke it (typically the user httpd runs as), and that user must -# have filesystem-level permission to access the repository. -# -# On a Windows system, you should name the hook program -# 'start-commit.bat' or 'start-commit.exe', -# but the basic idea is the same. -# -# The hook program runs in an empty environment, unless the server is -# explicitly configured otherwise. For example, a common problem is for -# the PATH environment variable to not be set to its usual value, so -# that subprograms fail to launch unless invoked via absolute path. -# If you're having unexpected problems with a hook program, the -# culprit may be unusual (or missing) environment variables. -# -# CAUTION: -# For security reasons, you MUST always properly quote arguments when -# you use them, as those arguments could contain whitespace or other -# problematic characters. Additionally, you should delimit the list -# of options with "--" before passing the arguments, so malicious -# clients cannot bootleg unexpected options to the commands your -# script aims to execute. -# For similar reasons, you should also add a trailing @ to URLs which -# are passed to SVN commands accepting URLs with peg revisions. -# -# Here is an example hook script, for a Unix /bin/sh interpreter. -# For more examples and pre-written hooks, see those in -# the Subversion repository at -# http://svn.apache.org/repos/asf/subversion/trunk/tools/hook-scripts/ and -# http://svn.apache.org/repos/asf/subversion/trunk/contrib/hook-scripts/ - - -REPOS="$1" -USER="$2" - -commit-allower.pl --repository "$REPOS" --user "$USER" || exit 1 -special-auth-check.py --user "$USER" --auth-level 3 || exit 1 - -# All checks passed, so allow the commit. -exit 0 diff --git a/manage_externals/test/repos/simple-ext.svn/locks/db-logs.lock b/manage_externals/test/repos/simple-ext.svn/locks/db-logs.lock deleted file mode 100644 index 20dd6369be..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/locks/db-logs.lock +++ /dev/null @@ -1,3 +0,0 @@ -This file is not used by Subversion 1.3.x or later. -However, its existence is required for compatibility with -Subversion 1.2.x or earlier. diff --git a/manage_externals/test/repos/simple-ext.svn/locks/db.lock b/manage_externals/test/repos/simple-ext.svn/locks/db.lock deleted file mode 100644 index 20dd6369be..0000000000 --- a/manage_externals/test/repos/simple-ext.svn/locks/db.lock +++ /dev/null @@ -1,3 +0,0 @@ -This file is not used by Subversion 1.3.x or later. -However, its existence is required for compatibility with -Subversion 1.2.x or earlier. diff --git a/manage_externals/test/requirements.txt b/manage_externals/test/requirements.txt deleted file mode 100644 index d66f6f1e67..0000000000 --- a/manage_externals/test/requirements.txt +++ /dev/null @@ -1,5 +0,0 @@ -pylint>=1.7.0 -autopep8>=1.3.0 -coverage>=4.4.0 -coveralls>=1.2.0 -sphinx>=1.6.0 diff --git a/manage_externals/test/test_sys_checkout.py b/manage_externals/test/test_sys_checkout.py deleted file mode 100755 index 664160dc99..0000000000 --- a/manage_externals/test/test_sys_checkout.py +++ /dev/null @@ -1,1871 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Terminology: - * 'container': a repo that has externals - * 'simple': a repo that has no externals, but is referenced as an external by another repo. - * 'mixed': a repo that both has externals and is referenced as an external by another repo. - - * 'clean': the local repo matches the version in the externals and has no local modifications. - * 'empty': the external isn't checked out at all. - -Note: this script assume the path to the manic and -checkout_externals module is already in the python path. This is -usually handled by the makefile. If you call it directly, you may need -to adjust your path. - -NOTE(bja, 2017-11) If a test fails, we want to keep the repo for that -test. But the tests will keep running, so we need a unique name. Also, -tearDown is always called after each test. I haven't figured out how -to determine if an assertion failed and whether it is safe to clean up -the test repos. - -So the solution is: - -* assign a unique id to each test repo. - -* never cleanup during the run. - -* Erase any existing repos at the begining of the module in -setUpModule. -""" - -# NOTE(bja, 2017-11) pylint complains that the module is too big, but -# I'm still working on how to break up the tests and still have the -# temporary directory be preserved.... -# pylint: disable=too-many-lines - - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import logging -import os -import os.path -import shutil -import unittest - -from manic.externals_description import ExternalsDescription -from manic.externals_description import DESCRIPTION_SECTION, VERSION_ITEM -from manic.externals_description import git_submodule_status -from manic.externals_status import ExternalStatus -from manic.repository_git import GitRepository -from manic.utils import printlog, execute_subprocess -from manic.global_constants import LOCAL_PATH_INDICATOR, VERBOSITY_DEFAULT -from manic.global_constants import LOG_FILE_NAME -from manic import checkout - -# ConfigParser was renamed in python2 to configparser. In python2, -# ConfigParser returns byte strings, str, instead of unicode. We need -# unicode to be compatible with xml and json parser and python3. -try: - # python2 - from ConfigParser import SafeConfigParser as config_parser -except ImportError: - # python3 - from configparser import ConfigParser as config_parser - -# --------------------------------------------------------------------- -# -# Global constants -# -# --------------------------------------------------------------------- - - -# Module-wide root directory for all the per-test subdirs we'll create on -# the fly (which are placed under wherever $CWD is when the test runs). -# Set by setupModule(). -module_tmp_root_dir = None -TMP_REPO_DIR_NAME = 'tmp' # subdir under $CWD - -# subdir under test/ that holds all of our checked-in repositories (which we -# will clone for these tests). -BARE_REPO_ROOT_NAME = 'repos' - -# Environment var referenced by checked-in externals file in mixed-cont-ext.git, -# which should be pointed to the fully-resolved BARE_REPO_ROOT_NAME directory. -# We explicitly clear this after every test, via tearDown(). -MIXED_CONT_EXT_ROOT_ENV_VAR = 'MANIC_TEST_BARE_REPO_ROOT' - -# Subdirs under bare repo root, each holding a repository. For more info -# on the contents of these repositories, see test/repos/README.md. In these -# tests the 'parent' repos are cloned as a starting point, whereas the 'child' -# repos are checked out when the tests run checkout_externals. -CONTAINER_REPO = 'container.git' # Parent repo -SIMPLE_REPO = 'simple-ext.git' # Child repo -SIMPLE_FORK_REPO = 'simple-ext-fork.git' # Child repo -MIXED_REPO = 'mixed-cont-ext.git' # Both parent and child -SVN_TEST_REPO = 'simple-ext.svn' # Subversion repository - -# Standard (arbitrary) external names for test configs -TAG_SECTION = 'simp_tag' -BRANCH_SECTION = 'simp_branch' -HASH_SECTION = 'simp_hash' - -# All the configs we construct check out their externals into these local paths. -EXTERNALS_PATH = 'externals' -SUB_EXTERNALS_PATH = 'src' # For mixed test repos, - -# For testing behavior with '.' instead of an explicit paths. -SIMPLE_LOCAL_ONLY_NAME = '.' - -# Externals files. -CFG_NAME = 'externals.cfg' # We construct this on a per-test basis. -CFG_SUB_NAME = 'sub-externals.cfg' # Already exists in mixed-cont-ext repo. - -# Arbitrary text file in all the test repos. -README_NAME = 'readme.txt' - -# Branch that exists in both the simple and simple-fork repos. -REMOTE_BRANCH_FEATURE2 = 'feature2' - -# Disable too-many-public-methods error -# pylint: disable=R0904 - -def setUpModule(): # pylint: disable=C0103 - """Setup for all tests in this module. It is called once per module! - """ - logging.basicConfig(filename=LOG_FILE_NAME, - format='%(levelname)s : %(asctime)s : %(message)s', - datefmt='%Y-%m-%d %H:%M:%S', - level=logging.DEBUG) - repo_root = os.path.join(os.getcwd(), TMP_REPO_DIR_NAME) - repo_root = os.path.abspath(repo_root) - # delete if it exists from previous runs - try: - shutil.rmtree(repo_root) - except BaseException: - pass - # create clean dir for this run - os.mkdir(repo_root) - - # Make available to all tests in this file. - global module_tmp_root_dir - assert module_tmp_root_dir == None, module_tmp_root_dir - module_tmp_root_dir = repo_root - - -class RepoUtils(object): - """Convenience methods for interacting with git repos.""" - @staticmethod - def create_branch(repo_base_dir, external_name, branch, with_commit=False): - """Create branch and optionally (with_commit) add a single commit. - """ - # pylint: disable=R0913 - cwd = os.getcwd() - repo_root = os.path.join(repo_base_dir, EXTERNALS_PATH, external_name) - os.chdir(repo_root) - cmd = ['git', 'checkout', '-b', branch, ] - execute_subprocess(cmd) - if with_commit: - msg = 'start work on {0}'.format(branch) - with open(README_NAME, 'a') as handle: - handle.write(msg) - cmd = ['git', 'add', README_NAME, ] - execute_subprocess(cmd) - cmd = ['git', 'commit', '-m', msg, ] - execute_subprocess(cmd) - os.chdir(cwd) - - @staticmethod - def create_commit(repo_base_dir, external_name): - """Make a commit to the given external. - - This is used to test sync state changes from local commits on - detached heads and tracking branches. - """ - cwd = os.getcwd() - repo_root = os.path.join(repo_base_dir, EXTERNALS_PATH, external_name) - os.chdir(repo_root) - - msg = 'work on great new feature!' - with open(README_NAME, 'a') as handle: - handle.write(msg) - cmd = ['git', 'add', README_NAME, ] - execute_subprocess(cmd) - cmd = ['git', 'commit', '-m', msg, ] - execute_subprocess(cmd) - os.chdir(cwd) - - @staticmethod - def clone_test_repo(bare_root, test_id, parent_repo_name, dest_dir_in): - """Clone repo at / into dest_dir_in or local per-test-subdir. - - Returns output dir. - """ - parent_repo_dir = os.path.join(bare_root, parent_repo_name) - if dest_dir_in is None: - # create unique subdir for this test - test_dir_name = test_id - print("Test repository name: {0}".format(test_dir_name)) - dest_dir = os.path.join(module_tmp_root_dir, test_dir_name) - else: - dest_dir = dest_dir_in - - # pylint: disable=W0212 - GitRepository._git_clone(parent_repo_dir, dest_dir, VERBOSITY_DEFAULT) - return dest_dir - - @staticmethod - def add_file_to_repo(under_test_dir, filename, tracked): - """Add a file to the repository so we can put it into a dirty state - - """ - cwd = os.getcwd() - os.chdir(under_test_dir) - with open(filename, 'w') as tmp: - tmp.write('Hello, world!') - - if tracked: - # NOTE(bja, 2018-01) brittle hack to obtain repo dir and - # file name - path_data = filename.split('/') - repo_dir = os.path.join(path_data[0], path_data[1]) - os.chdir(repo_dir) - tracked_file = path_data[2] - cmd = ['git', 'add', tracked_file] - execute_subprocess(cmd) - - os.chdir(cwd) - -class GenerateExternalsDescriptionCfgV1(object): - """Building blocks to create ExternalsDescriptionCfgV1 files. - - Basic usage: create_config() multiple create_*(), then write_config(). - Optionally after that: write_with_*(). - """ - - def __init__(self, bare_root): - self._schema_version = '1.1.0' - self._config = None - - # directory where we have test repositories (which we will clone for - # tests) - self._bare_root = bare_root - - def write_config(self, dest_dir, filename=CFG_NAME): - """Write self._config to disk - - """ - dest_path = os.path.join(dest_dir, filename) - with open(dest_path, 'w') as configfile: - self._config.write(configfile) - - def create_config(self): - """Create an config object and add the required metadata section - - """ - self._config = config_parser() - self.create_metadata() - - def create_metadata(self): - """Create the metadata section of the config file - """ - self._config.add_section(DESCRIPTION_SECTION) - - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, - self._schema_version) - - def url_for_repo_path(self, repo_path, repo_path_abs=None): - if repo_path_abs is not None: - return repo_path_abs - else: - return os.path.join(self._bare_root, repo_path) - - def create_section(self, repo_path, name, tag='', branch='', - ref_hash='', required=True, path=EXTERNALS_PATH, - sub_externals='', repo_path_abs=None, from_submodule=False, - sparse='', nested=False): - # pylint: disable=too-many-branches - """Create a config ExternalsDescription section with the given name. - - Autofills some items and handles some optional items. - - repo_path_abs overrides repo_path (which is relative to the bare repo) - path is a subdir under repo_path to check out to. - """ - # pylint: disable=R0913 - self._config.add_section(name) - if not from_submodule: - if nested: - self._config.set(name, ExternalsDescription.PATH, path) - else: - self._config.set(name, ExternalsDescription.PATH, - os.path.join(path, name)) - - self._config.set(name, ExternalsDescription.PROTOCOL, - ExternalsDescription.PROTOCOL_GIT) - - # from_submodules is incompatible with some other options, turn them off - if (from_submodule and - ((repo_path_abs is not None) or tag or ref_hash or branch)): - printlog('create_section: "from_submodule" is incompatible with ' - '"repo_url", "tag", "hash", and "branch" options;\n' - 'Ignoring those options for {}'.format(name)) - repo_url = None - tag = '' - ref_hash = '' - branch = '' - - repo_url = self.url_for_repo_path(repo_path, repo_path_abs) - - if not from_submodule: - self._config.set(name, ExternalsDescription.REPO_URL, repo_url) - - self._config.set(name, ExternalsDescription.REQUIRED, str(required)) - - if tag: - self._config.set(name, ExternalsDescription.TAG, tag) - - if branch: - self._config.set(name, ExternalsDescription.BRANCH, branch) - - if ref_hash: - self._config.set(name, ExternalsDescription.HASH, ref_hash) - - if sub_externals: - self._config.set(name, ExternalsDescription.EXTERNALS, - sub_externals) - - if sparse: - self._config.set(name, ExternalsDescription.SPARSE, sparse) - - if from_submodule: - self._config.set(name, ExternalsDescription.SUBMODULE, "True") - - def create_section_reference_to_subexternal(self, name): - """Just a reference to another externals file. - - """ - # pylint: disable=R0913 - self._config.add_section(name) - self._config.set(name, ExternalsDescription.PATH, LOCAL_PATH_INDICATOR) - - self._config.set(name, ExternalsDescription.PROTOCOL, - ExternalsDescription.PROTOCOL_EXTERNALS_ONLY) - - self._config.set(name, ExternalsDescription.REPO_URL, - LOCAL_PATH_INDICATOR) - - self._config.set(name, ExternalsDescription.REQUIRED, str(True)) - - self._config.set(name, ExternalsDescription.EXTERNALS, CFG_SUB_NAME) - - def create_svn_external(self, name, url, tag='', branch=''): - """Create a config section for an svn repository. - - """ - self._config.add_section(name) - self._config.set(name, ExternalsDescription.PATH, - os.path.join(EXTERNALS_PATH, name)) - - self._config.set(name, ExternalsDescription.PROTOCOL, - ExternalsDescription.PROTOCOL_SVN) - - self._config.set(name, ExternalsDescription.REPO_URL, url) - - self._config.set(name, ExternalsDescription.REQUIRED, str(True)) - - if tag: - self._config.set(name, ExternalsDescription.TAG, tag) - - if branch: - self._config.set(name, ExternalsDescription.BRANCH, branch) - - def write_with_git_branch(self, dest_dir, name, branch, new_remote_repo_path=None): - """Update fields in our config and write it to disk. - - name is the key of the ExternalsDescription in self._config to update. - """ - # pylint: disable=R0913 - self._config.set(name, ExternalsDescription.BRANCH, branch) - - if new_remote_repo_path: - if new_remote_repo_path == SIMPLE_LOCAL_ONLY_NAME: - repo_url = SIMPLE_LOCAL_ONLY_NAME - else: - repo_url = os.path.join(self._bare_root, new_remote_repo_path) - self._config.set(name, ExternalsDescription.REPO_URL, repo_url) - - try: - # remove the tag if it existed - self._config.remove_option(name, ExternalsDescription.TAG) - except BaseException: - pass - - self.write_config(dest_dir) - - def write_with_svn_branch(self, dest_dir, name, branch): - """Update a repository branch, and potentially the remote. - """ - # pylint: disable=R0913 - self._config.set(name, ExternalsDescription.BRANCH, branch) - - try: - # remove the tag if it existed - self._config.remove_option(name, ExternalsDescription.TAG) - except BaseException: - pass - - self.write_config(dest_dir) - - def write_with_tag_and_remote_repo(self, dest_dir, name, tag, new_remote_repo_path, - remove_branch=True): - """Update a repository tag and the remote. - - NOTE(bja, 2017-11) remove_branch=False should result in an - overspecified external with both a branch and tag. This is - used for error condition testing. - - """ - # pylint: disable=R0913 - self._config.set(name, ExternalsDescription.TAG, tag) - - if new_remote_repo_path: - repo_url = os.path.join(self._bare_root, new_remote_repo_path) - self._config.set(name, ExternalsDescription.REPO_URL, repo_url) - - try: - # remove the branch if it existed - if remove_branch: - self._config.remove_option(name, ExternalsDescription.BRANCH) - except BaseException: - pass - - self.write_config(dest_dir) - - def write_without_branch_tag(self, dest_dir, name): - """Update a repository protocol, and potentially the remote - """ - # pylint: disable=R0913 - try: - # remove the branch if it existed - self._config.remove_option(name, ExternalsDescription.BRANCH) - except BaseException: - pass - - try: - # remove the tag if it existed - self._config.remove_option(name, ExternalsDescription.TAG) - except BaseException: - pass - - self.write_config(dest_dir) - - def write_without_repo_url(self, dest_dir, name): - """Update a repository protocol, and potentially the remote - """ - # pylint: disable=R0913 - try: - # remove the repo url if it existed - self._config.remove_option(name, ExternalsDescription.REPO_URL) - except BaseException: - pass - - self.write_config(dest_dir) - - def write_with_protocol(self, dest_dir, name, protocol, repo_path=None): - """Update a repository protocol, and potentially the remote - """ - # pylint: disable=R0913 - self._config.set(name, ExternalsDescription.PROTOCOL, protocol) - - if repo_path: - repo_url = os.path.join(self._bare_root, repo_path) - self._config.set(name, ExternalsDescription.REPO_URL, repo_url) - - self.write_config(dest_dir) - - -def _execute_checkout_in_dir(dirname, args, debug_env=''): - """Execute the checkout command in the appropriate repo dir with the - specified additional args. - - args should be a list of strings. - debug_env shuld be a string of the form 'FOO=bar' or the empty string. - - Note that we are calling the command line processing and main - routines and not using a subprocess call so that we get code - coverage results! Note this means that environment variables are passed - to checkout_externals via os.environ; debug_env is just used to aid - manual reproducibility of a given call. - - Returns (overall_status, tree_status) - where overall_status is 0 for success, nonzero otherwise. - and tree_status is set if --status was passed in, None otherwise. - - Note this command executes the checkout command, it doesn't - necessarily do any checking out (e.g. if --status is passed in). - """ - cwd = os.getcwd() - - # Construct a command line for reproducibility; this command is not - # actually executed in the test. - os.chdir(dirname) - cmdline = ['--externals', CFG_NAME, ] - cmdline += args - manual_cmd = ('Running equivalent of:\n' - 'pushd {dirname}; ' - '{debug_env} /path/to/checkout_externals {args}'.format( - dirname=dirname, debug_env=debug_env, - args=' '.join(cmdline))) - printlog(manual_cmd) - options = checkout.commandline_arguments(cmdline) - overall_status, tree_status = checkout.main(options) - os.chdir(cwd) - return overall_status, tree_status - -class BaseTestSysCheckout(unittest.TestCase): - """Base class of reusable systems level test setup for - checkout_externals - - """ - # NOTE(bja, 2017-11) pylint complains about long method names, but - # it is hard to differentiate tests without making them more - # cryptic. - # pylint: disable=invalid-name - - # Command-line args for checkout_externals, used in execute_checkout_in_dir() - status_args = ['--status'] - checkout_args = [] - optional_args = ['--optional'] - verbose_args = ['--status', '--verbose'] - - def setUp(self): - """Setup for all individual checkout_externals tests - """ - # directory we want to return to after the test system and - # checkout_externals are done cd'ing all over the place. - self._return_dir = os.getcwd() - - self._test_id = self.id().split('.')[-1] - - # find root - if os.path.exists(os.path.join(os.getcwd(), 'checkout_externals')): - root_dir = os.path.abspath(os.getcwd()) - else: - # maybe we are in a subdir, search up - root_dir = os.path.abspath(os.path.join(os.getcwd(), os.pardir)) - while os.path.basename(root_dir): - if os.path.exists(os.path.join(root_dir, 'checkout_externals')): - break - root_dir = os.path.dirname(root_dir) - - if not os.path.exists(os.path.join(root_dir, 'checkout_externals')): - raise RuntimeError('Cannot find checkout_externals') - - # path to the executable - self._checkout = os.path.join(root_dir, 'checkout_externals') - - # directory where we have test repositories (which we will clone for - # tests) - self._bare_root = os.path.abspath( - os.path.join(root_dir, 'test', BARE_REPO_ROOT_NAME)) - - # set the input file generator - self._generator = GenerateExternalsDescriptionCfgV1(self._bare_root) - # set the input file generator for secondary externals - self._sub_generator = GenerateExternalsDescriptionCfgV1(self._bare_root) - - def tearDown(self): - """Tear down for individual tests - """ - # return to our common starting point - os.chdir(self._return_dir) - - # (in case this was set) Don't pollute environment of other tests. - os.environ.pop(MIXED_CONT_EXT_ROOT_ENV_VAR, - None) # Don't care if key wasn't set. - - def clone_test_repo(self, parent_repo_name, dest_dir_in=None): - """Clones repo under self._bare_root""" - return RepoUtils.clone_test_repo(self._bare_root, self._test_id, - parent_repo_name, dest_dir_in) - - def execute_checkout_in_dir(self, dirname, args, debug_env=''): - overall_status, tree_status = _execute_checkout_in_dir(dirname, args, - debug_env=debug_env) - self.assertEqual(overall_status, 0) - return tree_status - - def execute_checkout_with_status(self, dirname, args, debug_env=''): - """Calls checkout a second time to get status if needed.""" - tree_status = self.execute_checkout_in_dir( - dirname, args, debug_env=debug_env) - if tree_status is None: - tree_status = self.execute_checkout_in_dir(dirname, - self.status_args, - debug_env=debug_env) - self.assertNotEqual(tree_status, None) - return tree_status - - def _check_sync_clean(self, ext_status, expected_sync_state, - expected_clean_state): - self.assertEqual(ext_status.sync_state, expected_sync_state) - self.assertEqual(ext_status.clean_state, expected_clean_state) - - @staticmethod - def _external_path(section_name, base_path=EXTERNALS_PATH): - return './{0}/{1}'.format(base_path, section_name) - - def _check_file_exists(self, repo_dir, pathname): - "Check that exists in " - self.assertTrue(os.path.exists(os.path.join(repo_dir, pathname))) - - def _check_file_absent(self, repo_dir, pathname): - "Check that does not exist in " - self.assertFalse(os.path.exists(os.path.join(repo_dir, pathname))) - - -class TestSysCheckout(BaseTestSysCheckout): - """Run systems level tests of checkout_externals - """ - # NOTE(bja, 2017-11) pylint complains about long method names, but - # it is hard to differentiate tests without making them more - # cryptic. - # pylint: disable=invalid-name - - # ---------------------------------------------------------------- - # - # Run systems tests - # - # ---------------------------------------------------------------- - def test_required_bytag(self): - """Check out a required external pointing to a git tag.""" - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - self._generator.write_config(cloned_repo_dir) - - # externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - local_path_rel = self._external_path(TAG_SECTION) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - local_path_abs = os.path.join(cloned_repo_dir, local_path_rel) - self.assertFalse(os.path.exists(local_path_abs)) - - # after checkout, the external is 'clean' aka at the correct version. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # Actually checked out the desired repo. - self.assertEqual('origin', GitRepository._remote_name_for_url( - # Which url to look up - self._generator.url_for_repo_path(SIMPLE_REPO), - # Which directory has the local checked-out repo. - dirname=local_path_abs)) - - # Actually checked out the desired tag. - (tag_found, tag_name) = GitRepository._git_current_tag(local_path_abs) - self.assertEqual(tag_name, 'tag1') - - # Check existence of some simp_tag files - tag_path = os.path.join('externals', TAG_SECTION) - self._check_file_exists(cloned_repo_dir, - os.path.join(tag_path, README_NAME)) - # Subrepo should not exist (not referenced by configs). - self._check_file_absent(cloned_repo_dir, os.path.join(tag_path, - 'simple_subdir', - 'subdir_file.txt')) - - def test_required_bybranch(self): - """Check out a required external pointing to a git branch.""" - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - local_path_rel = self._external_path(BRANCH_SECTION) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - local_path_abs = os.path.join(cloned_repo_dir, local_path_rel) - self.assertFalse(os.path.exists(local_path_abs)) - - # after checkout, the external is 'clean' aka at the correct version. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self.assertTrue(os.path.exists(local_path_abs)) - - # Actually checked out the desired repo. - self.assertEqual('origin', GitRepository._remote_name_for_url( - # Which url to look up - self._generator.url_for_repo_path(SIMPLE_REPO), - # Which directory has the local checked-out repo. - dirname=local_path_abs)) - - # Actually checked out the desired branch. - (branch_found, branch_name) = GitRepository._git_current_remote_branch( - local_path_abs) - self.assertEquals(branch_name, 'origin/' + REMOTE_BRANCH_FEATURE2) - - def test_required_byhash(self): - """Check out a required external pointing to a git hash.""" - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, HASH_SECTION, - ref_hash='60b1cc1a38d63') - self._generator.write_config(cloned_repo_dir) - - # externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - local_path_rel = self._external_path(HASH_SECTION) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - local_path_abs = os.path.join(cloned_repo_dir, local_path_rel) - self.assertFalse(os.path.exists(local_path_abs)) - - # after checkout, the externals are 'clean' aka at their correct version. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[local_path_rel], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # Actually checked out the desired repo. - self.assertEqual('origin', GitRepository._remote_name_for_url( - # Which url to look up - self._generator.url_for_repo_path(SIMPLE_REPO), - # Which directory has the local checked-out repo. - dirname=local_path_abs)) - - # Actually checked out the desired hash. - (hash_found, hash_name) = GitRepository._git_current_hash( - local_path_abs) - self.assertTrue(hash_name.startswith('60b1cc1a38d63'), - msg=hash_name) - - def test_container_nested_required(self): - """Verify that a container with nested subrepos generates the correct initial status. - Tests over all possible permutations - """ - # Output subdirs for each of the externals, to test that one external can be - # checked out in a subdir of another. - NESTED_SUBDIR = ['./fred', './fred/wilma', './fred/wilma/barney'] - - # Assert that each type of external (e.g. tag vs branch) can be at any parent level - # (e.g. child/parent/grandparent). - orders = [[0, 1, 2], [1, 2, 0], [2, 0, 1], - [0, 2, 1], [2, 1, 0], [1, 0, 2]] - for n, order in enumerate(orders): - dest_dir = os.path.join(module_tmp_root_dir, self._test_id, - "test"+str(n)) - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO, - dest_dir_in=dest_dir) - self._generator.create_config() - # We happen to check out each section via a different reference (tag/branch/hash) but - # those don't really matter, we just need to check out three repos into a nested set of - # directories. - self._generator.create_section( - SIMPLE_REPO, TAG_SECTION, nested=True, - tag='tag1', path=NESTED_SUBDIR[order[0]]) - self._generator.create_section( - SIMPLE_REPO, BRANCH_SECTION, nested=True, - branch=REMOTE_BRANCH_FEATURE2, path=NESTED_SUBDIR[order[1]]) - self._generator.create_section( - SIMPLE_REPO, HASH_SECTION, nested=True, - ref_hash='60b1cc1a38d63', path=NESTED_SUBDIR[order[2]]) - self._generator.write_config(cloned_repo_dir) - - # all externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - self._check_sync_clean(tree[NESTED_SUBDIR[order[0]]], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[NESTED_SUBDIR[order[1]]], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[NESTED_SUBDIR[order[2]]], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - - # after checkout, all the repos are 'clean'. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[NESTED_SUBDIR[order[0]]], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[NESTED_SUBDIR[order[1]]], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[NESTED_SUBDIR[order[2]]], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_simple_optional(self): - """Verify that container with an optional simple subrepos generates - the correct initial status. - - """ - # create repo and externals config. - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, 'simp_req', - tag='tag1') - - self._generator.create_section(SIMPLE_REPO, 'simp_opt', - tag='tag1', required=False) - - self._generator.write_config(cloned_repo_dir) - - # all externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - req_status = tree[self._external_path('simp_req')] - self._check_sync_clean(req_status, - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self.assertEqual(req_status.source_type, ExternalStatus.MANAGED) - - opt_status = tree[self._external_path('simp_opt')] - self._check_sync_clean(opt_status, - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self.assertEqual(opt_status.source_type, ExternalStatus.OPTIONAL) - - # after checkout, required external is clean, optional is still empty. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - req_status = tree[self._external_path('simp_req')] - self._check_sync_clean(req_status, - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self.assertEqual(req_status.source_type, ExternalStatus.MANAGED) - - opt_status = tree[self._external_path('simp_opt')] - self._check_sync_clean(opt_status, - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self.assertEqual(opt_status.source_type, ExternalStatus.OPTIONAL) - - # after checking out optionals, the optional external is also clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.optional_args) - req_status = tree[self._external_path('simp_req')] - self._check_sync_clean(req_status, - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self.assertEqual(req_status.source_type, ExternalStatus.MANAGED) - - opt_status = tree[self._external_path('simp_opt')] - self._check_sync_clean(opt_status, - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self.assertEqual(opt_status.source_type, ExternalStatus.OPTIONAL) - - def test_container_simple_verbose(self): - """Verify that verbose status matches non-verbose. - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - self._generator.write_config(cloned_repo_dir) - - # after checkout, all externals should be 'clean'. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # 'Verbose' status should tell the same story. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.verbose_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_simple_dirty(self): - """Verify that a container with a new tracked file is marked dirty. - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - self._generator.write_config(cloned_repo_dir) - - # checkout, should start out clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # add a tracked file to the simp_tag external, should be dirty. - RepoUtils.add_file_to_repo(cloned_repo_dir, - 'externals/{0}/tmp.txt'.format(TAG_SECTION), - tracked=True) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.DIRTY) - - # Re-checkout; simp_tag should still be dirty. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.DIRTY) - - def test_container_simple_untracked(self): - """Verify that a container with simple subrepos and a untracked files - is not considered 'dirty' and will attempt an update. - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - self._generator.write_config(cloned_repo_dir) - - # checkout, should start out clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # add an untracked file to the simp_tag external, should stay clean. - RepoUtils.add_file_to_repo(cloned_repo_dir, - 'externals/{0}/tmp.txt'.format(TAG_SECTION), - tracked=False) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # After checkout, the external should still be 'clean'. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_simple_detached_sync(self): - """Verify that a container with simple subrepos generates the correct - out of sync status when making commits from a detached head - state. - - For more info about 'detached head' state: https://www.cloudbees.com/blog/git-detached-head - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - - self._generator.create_section(SIMPLE_REPO, 'simp_hash', - ref_hash='60b1cc1a38d63') - - self._generator.write_config(cloned_repo_dir) - - # externals start out 'empty' aka not checked out. - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - - # checkout - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # Commit on top of the tag and hash (creating the detached head state in those two - # externals' repos) - # The branch commit does not create the detached head state, but here for completeness. - RepoUtils.create_commit(cloned_repo_dir, TAG_SECTION) - RepoUtils.create_commit(cloned_repo_dir, HASH_SECTION) - RepoUtils.create_commit(cloned_repo_dir, BRANCH_SECTION) - - # sync status of all three should be 'modified' (uncommitted changes) - # clean status is 'ok' (matches externals version) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - - # after checkout, all externals should be totally clean (no uncommitted changes, - # and matches externals version). - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_remote_branch(self): - """Verify that a container with remote branch change works - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # initial checkout - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # update the branch external to point to a different remote with the same branch, - # then simp_branch should be out of sync - self._generator.write_with_git_branch(cloned_repo_dir, - name=BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2, - new_remote_repo_path=SIMPLE_FORK_REPO) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - - # checkout new externals, now simp_branch should be clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_remote_tag_same_branch(self): - """Verify that a container with remote tag change works. The new tag - should not be in the original repo, only the new remote - fork. The new tag is automatically fetched because it is on - the branch. - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # initial checkout - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # update the config file to point to a different remote with - # the new tag replacing the old branch. Tag MUST NOT be in the original - # repo! status of simp_branch should then be out of sync - self._generator.write_with_tag_and_remote_repo(cloned_repo_dir, BRANCH_SECTION, - tag='forked-feature-v1', - new_remote_repo_path=SIMPLE_FORK_REPO) - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.status_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - - # checkout new externals, then should be synced. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_remote_tag_fetch_all(self): - """Verify that a container with remote tag change works. The new tag - should not be in the original repo, only the new remote - fork. It should also not be on a branch that will be fetched, - and therefore not fetched by default with 'git fetch'. It will - only be retrieved by 'git fetch --tags' - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # initial checkout - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # update the config file to point to a different remote with - # the new tag instead of the old branch. Tag MUST NOT be in the original - # repo! status of simp_branch should then be out of sync. - self._generator.write_with_tag_and_remote_repo(cloned_repo_dir, BRANCH_SECTION, - tag='abandoned-feature', - new_remote_repo_path=SIMPLE_FORK_REPO) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - - # checkout new externals, should be clean again. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_preserve_dot(self): - """Verify that after inital checkout, modifying an external git repo - url to '.' and the current branch will leave it unchanged. - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # initial checkout - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # update the config file to point to a different remote with - # the same branch. - self._generator.write_with_git_branch(cloned_repo_dir, name=BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2, - new_remote_repo_path=SIMPLE_FORK_REPO) - # after checkout, should be clean again. - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # update branch to point to a new branch that only exists in - # the local fork - RepoUtils.create_branch(cloned_repo_dir, external_name=BRANCH_SECTION, - branch='private-feature', with_commit=True) - self._generator.write_with_git_branch(cloned_repo_dir, name=BRANCH_SECTION, - branch='private-feature', - new_remote_repo_path=SIMPLE_LOCAL_ONLY_NAME) - # after checkout, should be clean again. - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_mixed_subrepo(self): - """Verify container with mixed subrepo. - - The mixed subrepo has a sub-externals file with different - sub-externals on different branches. - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - - self._generator.create_config() - self._generator.create_section(MIXED_REPO, 'mixed_req', - branch='master', sub_externals=CFG_SUB_NAME) - self._generator.write_config(cloned_repo_dir) - - # The subrepo has a repo_url that uses this environment variable. - # It'll be cleared in tearDown(). - os.environ[MIXED_CONT_EXT_ROOT_ENV_VAR] = self._bare_root - debug_env = MIXED_CONT_EXT_ROOT_ENV_VAR + '=' + self._bare_root - - # inital checkout: all requireds are clean, and optional is empty. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args, - debug_env=debug_env) - mixed_req_path = self._external_path('mixed_req') - self._check_sync_clean(tree[mixed_req_path], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - sub_ext_base_path = "{0}/{1}/{2}".format(EXTERNALS_PATH, 'mixed_req', SUB_EXTERNALS_PATH) - # The already-checked-in subexternals file has a 'simp_branch' section - self._check_sync_clean(tree[self._external_path('simp_branch', base_path=sub_ext_base_path)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # update the mixed-use external to point to different branch - # status should become out of sync for mixed_req, but sub-externals - # are still in sync - self._generator.write_with_git_branch(cloned_repo_dir, name='mixed_req', - branch='new-feature', - new_remote_repo_path=MIXED_REPO) - tree = self.execute_checkout_in_dir(cloned_repo_dir, self.status_args, - debug_env=debug_env) - self._check_sync_clean(tree[mixed_req_path], - ExternalStatus.MODEL_MODIFIED, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path('simp_branch', base_path=sub_ext_base_path)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # run the checkout. Now the mixed use external and its sub-externals should be clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, self.checkout_args, - debug_env=debug_env) - self._check_sync_clean(tree[mixed_req_path], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path('simp_branch', base_path=sub_ext_base_path)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_component(self): - """Verify that optional component checkout works - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - - # create the top level externals file - self._generator.create_config() - # Optional external, by tag. - self._generator.create_section(SIMPLE_REPO, 'simp_opt', - tag='tag1', required=False) - - # Required external, by branch. - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - - # Required external, by hash. - self._generator.create_section(SIMPLE_REPO, HASH_SECTION, - ref_hash='60b1cc1a38d63') - self._generator.write_config(cloned_repo_dir) - - # inital checkout, first try a nonexistent component argument noref - checkout_args = ['simp_opt', 'noref'] - checkout_args.extend(self.checkout_args) - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, checkout_args) - - # Now explicitly check out one optional component.. - # Explicitly listed component (opt) should be present, the other two not. - checkout_args = ['simp_opt'] - checkout_args.extend(self.checkout_args) - tree = self.execute_checkout_with_status(cloned_repo_dir, - checkout_args) - self._check_sync_clean(tree[self._external_path('simp_opt')], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - - # Check out a second component, this one required. - # Explicitly listed component (branch) should be present, the still-unlisted one (tag) not. - checkout_args.append(BRANCH_SECTION) - tree = self.execute_checkout_with_status(cloned_repo_dir, - checkout_args) - self._check_sync_clean(tree[self._external_path('simp_opt')], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - - - def test_container_exclude_component(self): - """Verify that exclude component checkout works - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag1') - - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - - self._generator.create_section(SIMPLE_REPO, 'simp_hash', - ref_hash='60b1cc1a38d63') - - self._generator.write_config(cloned_repo_dir) - - # inital checkout should result in all externals being clean except excluded TAG_SECTION. - checkout_args = ['--exclude', TAG_SECTION] - checkout_args.extend(self.checkout_args) - tree = self.execute_checkout_with_status(cloned_repo_dir, checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.EMPTY, - ExternalStatus.DEFAULT) - self._check_sync_clean(tree[self._external_path(BRANCH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path(HASH_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_subexternal(self): - """Verify that an externals file can be brought in as a reference. - - """ - cloned_repo_dir = self.clone_test_repo(MIXED_REPO) - - self._generator.create_config() - self._generator.create_section_reference_to_subexternal('mixed_base') - self._generator.write_config(cloned_repo_dir) - - # The subrepo has a repo_url that uses this environment variable. - # It'll be cleared in tearDown(). - os.environ[MIXED_CONT_EXT_ROOT_ENV_VAR] = self._bare_root - debug_env = MIXED_CONT_EXT_ROOT_ENV_VAR + '=' + self._bare_root - - # After checkout, confirm required's are clean and the referenced - # subexternal's contents are also clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args, - debug_env=debug_env) - - self._check_sync_clean( - tree[self._external_path(BRANCH_SECTION, base_path=SUB_EXTERNALS_PATH)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def test_container_sparse(self): - """Verify that 'full' container with simple subrepo - can run a sparse checkout and generate the correct initial status. - - """ - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - - # Create a file to list filenames to checkout. - sparse_filename = 'sparse_checkout' - with open(os.path.join(cloned_repo_dir, sparse_filename), 'w') as sfile: - sfile.write(README_NAME) - - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, - tag='tag2') - - # Same tag as above, but with a sparse file too. - sparse_relpath = '../../' + sparse_filename - self._generator.create_section(SIMPLE_REPO, 'simp_sparse', - tag='tag2', sparse=sparse_relpath) - - self._generator.write_config(cloned_repo_dir) - - # inital checkout, confirm required's are clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._external_path('simp_sparse')], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - # Check existence of some files - full set in TAG_SECTION, and sparse set - # in 'simp_sparse'. - subrepo_path = os.path.join('externals', TAG_SECTION) - self._check_file_exists(cloned_repo_dir, - os.path.join(subrepo_path, README_NAME)) - self._check_file_exists(cloned_repo_dir, os.path.join(subrepo_path, - 'simple_subdir', - 'subdir_file.txt')) - subrepo_path = os.path.join('externals', 'simp_sparse') - self._check_file_exists(cloned_repo_dir, - os.path.join(subrepo_path, README_NAME)) - self._check_file_absent(cloned_repo_dir, os.path.join(subrepo_path, - 'simple_subdir', - 'subdir_file.txt')) - -class TestSysCheckoutSVN(BaseTestSysCheckout): - """Run systems level tests of checkout_externals accessing svn repositories - - SVN tests - these tests use the svn repository interface. - """ - - @staticmethod - def _svn_branch_name(): - return './{0}/svn_branch'.format(EXTERNALS_PATH) - - @staticmethod - def _svn_tag_name(): - return './{0}/svn_tag'.format(EXTERNALS_PATH) - - def _svn_test_repo_url(self): - return 'file://' + os.path.join(self._bare_root, SVN_TEST_REPO) - - def _check_tag_branch_svn_tag_clean(self, tree): - self._check_sync_clean(tree[self._external_path(TAG_SECTION)], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._svn_branch_name()], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - self._check_sync_clean(tree[self._svn_tag_name()], - ExternalStatus.STATUS_OK, - ExternalStatus.STATUS_OK) - - def _have_svn_access(self): - """Check if we have svn access so we can enable tests that use svn. - - """ - have_svn = False - cmd = ['svn', 'ls', self._svn_test_repo_url(), ] - try: - execute_subprocess(cmd) - have_svn = True - except BaseException: - pass - return have_svn - - def _skip_if_no_svn_access(self): - """Function decorator to disable svn tests when svn isn't available - """ - have_svn = self._have_svn_access() - if not have_svn: - raise unittest.SkipTest("No svn access") - - def test_container_simple_svn(self): - """Verify that a container repo can pull in an svn branch and svn tag. - - """ - self._skip_if_no_svn_access() - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - - self._generator.create_config() - # Git repo. - self._generator.create_section(SIMPLE_REPO, TAG_SECTION, tag='tag1') - - # Svn repos. - self._generator.create_svn_external('svn_branch', self._svn_test_repo_url(), branch='trunk') - self._generator.create_svn_external('svn_tag', self._svn_test_repo_url(), tag='tags/cesm2.0.beta07') - - self._generator.write_config(cloned_repo_dir) - - # checkout, make sure all sections are clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_tag_branch_svn_tag_clean(tree) - - # update description file to make the tag into a branch and - # trigger a switch - self._generator.write_with_svn_branch(cloned_repo_dir, 'svn_tag', - 'trunk') - - # checkout, again the results should be clean. - tree = self.execute_checkout_with_status(cloned_repo_dir, - self.checkout_args) - self._check_tag_branch_svn_tag_clean(tree) - - # add an untracked file to the repo - tracked = False - RepoUtils.add_file_to_repo(cloned_repo_dir, - 'externals/svn_branch/tmp.txt', tracked) - - # run a no-op checkout. - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - # update description file to make the branch into a tag and - # trigger a modified sync status - self._generator.write_with_svn_branch(cloned_repo_dir, 'svn_tag', - 'tags/cesm2.0.beta07') - - self.execute_checkout_in_dir(cloned_repo_dir,self.checkout_args) - - # verify status is still clean and unmodified, last - # checkout modified the working dir state. - tree = self.execute_checkout_in_dir(cloned_repo_dir, - self.verbose_args) - self._check_tag_branch_svn_tag_clean(tree) - -class TestSubrepoCheckout(BaseTestSysCheckout): - # Need to store information at setUp time for checking - # pylint: disable=too-many-instance-attributes - """Run tests to ensure proper handling of repos with submodules. - - By default, submodules in git repositories are checked out. A git - repository checked out as a submodule is treated as if it was - listed in an external with the same properties as in the source - .gitmodules file. - """ - - def setUp(self): - """Setup for all submodule checkout tests - Create a repo with two submodule repositories. - """ - - # Run the basic setup - super().setUp() - # create test repo - # We need to do this here (rather than have a static repo) because - # git submodules do not allow for variables in .gitmodules files - self._test_repo_name = 'test_repo_with_submodules' - self._bare_branch_name = 'subrepo_branch' - self._config_branch_name = 'subrepo_config_branch' - self._container_extern_name = 'externals_container.cfg' - self._my_test_dir = os.path.join(module_tmp_root_dir, self._test_id) - self._repo_dir = os.path.join(self._my_test_dir, self._test_repo_name) - self._checkout_dir = 'repo_with_submodules' - check_dir = self.clone_test_repo(CONTAINER_REPO, - dest_dir_in=self._repo_dir) - self.assertTrue(self._repo_dir == check_dir) - # Add the submodules - cwd = os.getcwd() - fork_repo_dir = os.path.join(self._bare_root, SIMPLE_FORK_REPO) - simple_repo_dir = os.path.join(self._bare_root, SIMPLE_REPO) - self._simple_ext_fork_name = os.path.splitext(SIMPLE_FORK_REPO)[0] - self._simple_ext_name = os.path.join('sourc', - os.path.splitext(SIMPLE_REPO)[0]) - os.chdir(self._repo_dir) - # Add a branch with a subrepo - cmd = ['git', 'branch', self._bare_branch_name, 'master'] - execute_subprocess(cmd) - cmd = ['git', 'checkout', self._bare_branch_name] - execute_subprocess(cmd) - cmd = ['git', '-c', 'protocol.file.allow=always','submodule', 'add', fork_repo_dir] - execute_subprocess(cmd) - cmd = ['git', 'commit', '-am', "'Added simple-ext-fork as a submodule'"] - execute_subprocess(cmd) - # Save the fork repo hash for comparison - os.chdir(self._simple_ext_fork_name) - self._fork_hash_check = self.get_git_hash() - os.chdir(self._repo_dir) - # Now, create a branch to test from_sbmodule - cmd = ['git', 'branch', - self._config_branch_name, self._bare_branch_name] - execute_subprocess(cmd) - cmd = ['git', 'checkout', self._config_branch_name] - execute_subprocess(cmd) - cmd = ['git', '-c', 'protocol.file.allow=always', 'submodule', 'add', '--name', SIMPLE_REPO, - simple_repo_dir, self._simple_ext_name] - execute_subprocess(cmd) - # Checkout feature2 - os.chdir(self._simple_ext_name) - cmd = ['git', 'branch', 'feature2', 'origin/feature2'] - execute_subprocess(cmd) - cmd = ['git', 'checkout', 'feature2'] - execute_subprocess(cmd) - # Save the fork repo hash for comparison - self._simple_hash_check = self.get_git_hash() - os.chdir(self._repo_dir) - self.write_externals_config(filename=self._container_extern_name, - dest_dir=self._repo_dir, from_submodule=True) - cmd = ['git', 'add', self._container_extern_name] - execute_subprocess(cmd) - cmd = ['git', 'commit', '-am', "'Added simple-ext as a submodule'"] - execute_subprocess(cmd) - # Reset to master - cmd = ['git', 'checkout', 'master'] - execute_subprocess(cmd) - os.chdir(cwd) - - @staticmethod - def get_git_hash(revision="HEAD"): - """Return the hash for """ - cmd = ['git', 'rev-parse', revision] - git_out = execute_subprocess(cmd, output_to_caller=True) - return git_out.strip() - - def write_externals_config(self, name='', dest_dir=None, - filename=CFG_NAME, - branch_name=None, sub_externals=None, - from_submodule=False): - # pylint: disable=too-many-arguments - """Create a container externals file with only simple externals. - - """ - self._generator.create_config() - - if dest_dir is None: - dest_dir = self._my_test_dir - - if from_submodule: - self._generator.create_section(SIMPLE_FORK_REPO, - self._simple_ext_fork_name, - from_submodule=True) - self._generator.create_section(SIMPLE_REPO, - self._simple_ext_name, - branch='feature3', path='', - from_submodule=False) - else: - if branch_name is None: - branch_name = 'master' - - self._generator.create_section(self._test_repo_name, - self._checkout_dir, - branch=branch_name, - path=name, sub_externals=sub_externals, - repo_path_abs=self._repo_dir) - - self._generator.write_config(dest_dir, filename=filename) - - def idempotence_check(self, checkout_dir): - """Verify that calling checkout_externals and - checkout_externals --status does not cause errors""" - cwd = os.getcwd() - os.chdir(checkout_dir) - self.execute_checkout_in_dir(self._my_test_dir, - self.checkout_args) - self.execute_checkout_in_dir(self._my_test_dir, - self.status_args) - os.chdir(cwd) - - def test_submodule_checkout_bare(self): - """Verify that a git repo with submodule is properly checked out - This test if for where there is no 'externals' keyword in the - parent repo. - Correct behavior is that the submodule is checked out using - normal git submodule behavior. - """ - simple_ext_fork_tag = "(tag1)" - simple_ext_fork_status = " " - self.write_externals_config(branch_name=self._bare_branch_name) - self.execute_checkout_in_dir(self._my_test_dir, - self.checkout_args) - cwd = os.getcwd() - checkout_dir = os.path.join(self._my_test_dir, self._checkout_dir) - fork_file = os.path.join(checkout_dir, - self._simple_ext_fork_name, "readme.txt") - self.assertTrue(os.path.exists(fork_file)) - - submods = git_submodule_status(checkout_dir) - print('checking status of', checkout_dir, ':', submods) - self.assertEqual(len(submods.keys()), 1) - self.assertTrue(self._simple_ext_fork_name in submods) - submod = submods[self._simple_ext_fork_name] - self.assertTrue('hash' in submod) - self.assertEqual(submod['hash'], self._fork_hash_check) - self.assertTrue('status' in submod) - self.assertEqual(submod['status'], simple_ext_fork_status) - self.assertTrue('tag' in submod) - self.assertEqual(submod['tag'], simple_ext_fork_tag) - self.idempotence_check(checkout_dir) - - def test_submodule_checkout_none(self): - """Verify that a git repo with submodule is properly checked out - This test is for when 'externals=None' is in parent repo's - externals cfg file. - Correct behavior is the submodle is not checked out. - """ - self.write_externals_config(branch_name=self._bare_branch_name, - sub_externals="none") - self.execute_checkout_in_dir(self._my_test_dir, - self.checkout_args) - cwd = os.getcwd() - checkout_dir = os.path.join(self._my_test_dir, self._checkout_dir) - fork_file = os.path.join(checkout_dir, - self._simple_ext_fork_name, "readme.txt") - self.assertFalse(os.path.exists(fork_file)) - os.chdir(cwd) - self.idempotence_check(checkout_dir) - - def test_submodule_checkout_config(self): # pylint: disable=too-many-locals - """Verify that a git repo with submodule is properly checked out - This test if for when the 'from_submodule' keyword is used in the - parent repo. - Correct behavior is that the submodule is checked out using - normal git submodule behavior. - """ - tag_check = None # Not checked out as submodule - status_check = "-" # Not checked out as submodule - self.write_externals_config(branch_name=self._config_branch_name, - sub_externals=self._container_extern_name) - self.execute_checkout_in_dir(self._my_test_dir, - self.checkout_args) - cwd = os.getcwd() - checkout_dir = os.path.join(self._my_test_dir, self._checkout_dir) - fork_file = os.path.join(checkout_dir, - self._simple_ext_fork_name, "readme.txt") - self.assertTrue(os.path.exists(fork_file)) - os.chdir(checkout_dir) - # Check submodule status - submods = git_submodule_status(checkout_dir) - self.assertEqual(len(submods.keys()), 2) - self.assertTrue(self._simple_ext_fork_name in submods) - submod = submods[self._simple_ext_fork_name] - self.assertTrue('hash' in submod) - self.assertEqual(submod['hash'], self._fork_hash_check) - self.assertTrue('status' in submod) - self.assertEqual(submod['status'], status_check) - self.assertTrue('tag' in submod) - self.assertEqual(submod['tag'], tag_check) - self.assertTrue(self._simple_ext_name in submods) - submod = submods[self._simple_ext_name] - self.assertTrue('hash' in submod) - self.assertEqual(submod['hash'], self._simple_hash_check) - self.assertTrue('status' in submod) - self.assertEqual(submod['status'], status_check) - self.assertTrue('tag' in submod) - self.assertEqual(submod['tag'], tag_check) - # Check fork repo status - os.chdir(self._simple_ext_fork_name) - self.assertEqual(self.get_git_hash(), self._fork_hash_check) - os.chdir(checkout_dir) - os.chdir(self._simple_ext_name) - hash_check = self.get_git_hash('origin/feature3') - self.assertEqual(self.get_git_hash(), hash_check) - os.chdir(cwd) - self.idempotence_check(checkout_dir) - -class TestSysCheckoutErrors(BaseTestSysCheckout): - """Run systems level tests of error conditions in checkout_externals - - Error conditions - these tests are designed to trigger specific - error conditions and ensure that they are being handled as - runtime errors (and hopefully usefull error messages) instead of - the default internal message that won't mean anything to the - user, e.g. key error, called process error, etc. - - These are not 'expected failures'. They are pass when a - RuntimeError is raised, fail if any other error is raised (or no - error is raised). - - """ - - # NOTE(bja, 2017-11) pylint complains about long method names, but - # it is hard to differentiate tests without making them more - # cryptic. - # pylint: disable=invalid-name - - def test_error_unknown_protocol(self): - """Verify that a runtime error is raised when the user specified repo - protocol is not known. - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_with_protocol(cloned_repo_dir, BRANCH_SECTION, - 'this-protocol-does-not-exist') - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - def test_error_switch_protocol(self): - """Verify that a runtime error is raised when the user switches - protocols, git to svn. - - TODO(bja, 2017-11) This correctly results in an error, but it - isn't a helpful error message. - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_with_protocol(cloned_repo_dir, BRANCH_SECTION, 'svn') - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - def test_error_unknown_tag(self): - """Verify that a runtime error is raised when the user specified tag - does not exist. - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_with_tag_and_remote_repo(cloned_repo_dir, BRANCH_SECTION, - tag='this-tag-does-not-exist', - new_remote_repo_path=SIMPLE_REPO) - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - def test_error_overspecify_tag_branch(self): - """Verify that a runtime error is raised when the user specified both - tag and a branch - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_with_tag_and_remote_repo(cloned_repo_dir, BRANCH_SECTION, - tag='this-tag-does-not-exist', - new_remote_repo_path=SIMPLE_REPO, - remove_branch=False) - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - def test_error_underspecify_tag_branch(self): - """Verify that a runtime error is raised when the user specified - neither a tag or a branch - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_without_branch_tag(cloned_repo_dir, BRANCH_SECTION) - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - def test_error_missing_url(self): - """Verify that a runtime error is raised when the user specified - neither a tag or a branch - - """ - # create repo - cloned_repo_dir = self.clone_test_repo(CONTAINER_REPO) - self._generator.create_config() - self._generator.create_section(SIMPLE_REPO, BRANCH_SECTION, - branch=REMOTE_BRANCH_FEATURE2) - self._generator.write_config(cloned_repo_dir) - - # update the config file to point to a different remote with - # the tag instead of branch. Tag MUST NOT be in the original - # repo! - self._generator.write_without_repo_url(cloned_repo_dir, - BRANCH_SECTION) - - with self.assertRaises(RuntimeError): - self.execute_checkout_in_dir(cloned_repo_dir, self.checkout_args) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_sys_repository_git.py b/manage_externals/test/test_sys_repository_git.py deleted file mode 100644 index 7e5fb5020d..0000000000 --- a/manage_externals/test/test_sys_repository_git.py +++ /dev/null @@ -1,238 +0,0 @@ -#!/usr/bin/env python3 - -"""Tests of some of the functionality in repository_git.py that actually -interacts with git repositories. - -We're calling these "system" tests because we expect them to be a lot -slower than most of the unit tests. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import os -import shutil -import tempfile -import unittest - -from manic.repository_git import GitRepository -from manic.externals_description import ExternalsDescription -from manic.externals_description import ExternalsDescriptionDict -from manic.utils import execute_subprocess - -# NOTE(wjs, 2018-04-09) I find a mix of camel case and underscores to be -# more readable for unit test names, so I'm disabling pylint's naming -# convention check -# pylint: disable=C0103 - -# Allow access to protected members -# pylint: disable=W0212 - - -class GitTestCase(unittest.TestCase): - """Adds some git-specific unit test functionality on top of TestCase""" - - def assertIsHash(self, maybe_hash): - """Assert that the string given by maybe_hash really does look - like a git hash. - """ - - # Ensure it is non-empty - self.assertTrue(maybe_hash, msg="maybe_hash is empty") - - # Ensure it has a single string - self.assertEqual(1, len(maybe_hash.split()), - msg="maybe_hash has multiple strings: {}".format(maybe_hash)) - - # Ensure that the only characters in the string are ones allowed - # in hashes - allowed_chars_set = set('0123456789abcdef') - self.assertTrue(set(maybe_hash) <= allowed_chars_set, - msg="maybe_hash has non-hash characters: {}".format(maybe_hash)) - - -class TestGitTestCase(GitTestCase): - """Tests GitTestCase""" - - def test_assertIsHash_true(self): - """Ensure that assertIsHash passes for something that looks - like a hash""" - self.assertIsHash('abc123') - - def test_assertIsHash_empty(self): - """Ensure that assertIsHash raises an AssertionError for an - empty string""" - with self.assertRaises(AssertionError): - self.assertIsHash('') - - def test_assertIsHash_multipleStrings(self): - """Ensure that assertIsHash raises an AssertionError when - given multiple strings""" - with self.assertRaises(AssertionError): - self.assertIsHash('abc123 def456') - - def test_assertIsHash_badChar(self): - """Ensure that assertIsHash raises an AssertionError when given a - string that has a character that doesn't belong in a hash - """ - with self.assertRaises(AssertionError): - self.assertIsHash('abc123g') - - -class TestGitRepositoryGitCommands(GitTestCase): - """Test some git commands in RepositoryGit - - It's silly that we need to create a repository in order to test - these git commands. Much or all of the git functionality that is - currently in repository_git.py should eventually be moved to a - separate module that is solely responsible for wrapping git - commands; that would allow us to test it independently of this - repository class. - """ - - # ======================================================================== - # Test helper functions - # ======================================================================== - - def setUp(self): - # directory we want to return to after the test system and - # checkout_externals are done cd'ing all over the place. - self._return_dir = os.getcwd() - - self._tmpdir = tempfile.mkdtemp() - os.chdir(self._tmpdir) - - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - '/path/to/local/repo', - ExternalsDescription.TAG: - 'tag1', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'junk', - ExternalsDescription.EXTERNALS: '', - ExternalsDescription.REPO: rdata, - }, - } - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = GitRepository('test', repo) - - def tearDown(self): - # return to our common starting point - os.chdir(self._return_dir) - - shutil.rmtree(self._tmpdir, ignore_errors=True) - - @staticmethod - def make_cwd_git_repo(): - """Turn the current directory into an empty git repository""" - execute_subprocess(['git', 'init']) - - @staticmethod - def add_cwd_git_commit(): - """Add a git commit in the current directory""" - with open('README', 'a') as myfile: - myfile.write('more info') - execute_subprocess(['git', 'add', 'README']) - execute_subprocess(['git', 'commit', '-m', 'my commit message']) - - @staticmethod - def checkout_cwd_git_branch(branchname): - """Checkout a new branch in the current directory""" - execute_subprocess(['git', 'checkout', '-b', branchname]) - - @staticmethod - def make_cwd_git_tag(tagname): - """Make a lightweight tag at the current commit""" - execute_subprocess(['git', 'tag', '-m', 'making a tag', tagname]) - - @staticmethod - def checkout_cwd_ref(refname): - """Checkout the given refname in the current directory""" - execute_subprocess(['git', 'checkout', refname]) - - # ======================================================================== - # Begin actual tests - # ======================================================================== - - def test_currentHash_returnsHash(self): - """Ensure that the _git_current_hash function returns a hash""" - self.make_cwd_git_repo() - self.add_cwd_git_commit() - hash_found, myhash = self._repo._git_current_hash(os.getcwd()) - self.assertTrue(hash_found) - self.assertIsHash(myhash) - - def test_currentHash_outsideGitRepo(self): - """Ensure that the _git_current_hash function returns False when - outside a git repository""" - hash_found, myhash = self._repo._git_current_hash(os.getcwd()) - self.assertFalse(hash_found) - self.assertEqual('', myhash) - - def test_currentBranch_onBranch(self): - """Ensure that the _git_current_branch function returns the name - of the branch""" - self.make_cwd_git_repo() - self.add_cwd_git_commit() - self.checkout_cwd_git_branch('foo') - branch_found, mybranch = self._repo._git_current_branch(os.getcwd()) - self.assertTrue(branch_found) - self.assertEqual('foo', mybranch) - - def test_currentBranch_notOnBranch(self): - """Ensure that the _git_current_branch function returns False - when not on a branch""" - self.make_cwd_git_repo() - self.add_cwd_git_commit() - self.make_cwd_git_tag('mytag') - self.checkout_cwd_ref('mytag') - branch_found, mybranch = self._repo._git_current_branch(os.getcwd()) - self.assertFalse(branch_found) - self.assertEqual('', mybranch) - - def test_currentBranch_outsideGitRepo(self): - """Ensure that the _git_current_branch function returns False - when outside a git repository""" - branch_found, mybranch = self._repo._git_current_branch(os.getcwd()) - self.assertFalse(branch_found) - self.assertEqual('', mybranch) - - def test_currentTag_onTag(self): - """Ensure that the _git_current_tag function returns the name of - the tag""" - self.make_cwd_git_repo() - self.add_cwd_git_commit() - self.make_cwd_git_tag('some_tag') - tag_found, mytag = self._repo._git_current_tag(os.getcwd()) - self.assertTrue(tag_found) - self.assertEqual('some_tag', mytag) - - def test_currentTag_notOnTag(self): - """Ensure tha the _git_current_tag function returns False when - not on a tag""" - self.make_cwd_git_repo() - self.add_cwd_git_commit() - self.make_cwd_git_tag('some_tag') - self.add_cwd_git_commit() - tag_found, mytag = self._repo._git_current_tag(os.getcwd()) - self.assertFalse(tag_found) - self.assertEqual('', mytag) - - def test_currentTag_outsideGitRepo(self): - """Ensure that the _git_current_tag function returns False when - outside a git repository""" - tag_found, mytag = self._repo._git_current_tag(os.getcwd()) - self.assertFalse(tag_found) - self.assertEqual('', mytag) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_externals_description.py b/manage_externals/test/test_unit_externals_description.py deleted file mode 100644 index 30e5288499..0000000000 --- a/manage_externals/test/test_unit_externals_description.py +++ /dev/null @@ -1,478 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Note: this script assume the path to the checkout_externals.py module is -already in the python path. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import os -import os.path -import shutil -import unittest - -try: - # python2 - from ConfigParser import SafeConfigParser as config_parser - - def config_string_cleaner(text): - """convert strings into unicode - """ - return text.decode('utf-8') -except ImportError: - # python3 - from configparser import ConfigParser as config_parser - - def config_string_cleaner(text): - """Python3 already uses unicode strings, so just return the string - without modification. - - """ - return text - -from manic.externals_description import DESCRIPTION_SECTION, VERSION_ITEM -from manic.externals_description import ExternalsDescription -from manic.externals_description import ExternalsDescriptionDict -from manic.externals_description import ExternalsDescriptionConfigV1 -from manic.externals_description import get_cfg_schema_version -from manic.externals_description import read_externals_description_file -from manic.externals_description import create_externals_description - -from manic.global_constants import EMPTY_STR - - -class TestCfgSchemaVersion(unittest.TestCase): - """Test that schema identification for the externals description - returns the correct results. - - """ - - def setUp(self): - """Reusable config object - """ - self._config = config_parser() - self._config.add_section('section1') - self._config.set('section1', 'keword', 'value') - - self._config.add_section(DESCRIPTION_SECTION) - - def test_schema_version_valid(self): - """Test that schema identification returns the correct version for a - valid tag. - - """ - version_str = '2.1.3' - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, version_str) - major, minor, patch = get_cfg_schema_version(self._config) - expected_major = 2 - expected_minor = 1 - expected_patch = 3 - self.assertEqual(expected_major, major) - self.assertEqual(expected_minor, minor) - self.assertEqual(expected_patch, patch) - - def test_schema_section_missing(self): - """Test that an error is returned if the schema section is missing - from the input file. - - """ - self._config.remove_section(DESCRIPTION_SECTION) - with self.assertRaises(RuntimeError): - get_cfg_schema_version(self._config) - - def test_schema_version_missing(self): - """Test that a externals description file without a version raises a - runtime error. - - """ - # Note: the default setup method shouldn't include a version - # keyword, but remove it just to be future proof.... - self._config.remove_option(DESCRIPTION_SECTION, VERSION_ITEM) - with self.assertRaises(RuntimeError): - get_cfg_schema_version(self._config) - - def test_schema_version_not_int(self): - """Test that a externals description file a version that doesn't - decompose to integer major, minor and patch versions raises - runtime error. - - """ - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, 'unknown') - with self.assertRaises(RuntimeError): - get_cfg_schema_version(self._config) - - -class TestModelDescritionConfigV1(unittest.TestCase): - """Test that parsing config/ini fileproduces a correct dictionary - for the externals description. - - """ - # pylint: disable=R0902 - - def setUp(self): - """Boiler plate construction of string containing xml for multiple components. - """ - self._comp1_name = 'comp1' - self._comp1_path = 'path/to/comp1' - self._comp1_protocol = 'svn' - self._comp1_url = 'https://svn.somewhere.com/path/of/comp1' - self._comp1_tag = 'a_nice_tag_v1' - self._comp1_is_required = 'True' - self._comp1_externals = '' - - self._comp2_name = 'comp2' - self._comp2_path = 'path/to/comp2' - self._comp2_protocol = 'git' - self._comp2_url = '/local/clone/of/comp2' - self._comp2_branch = 'a_very_nice_branch' - self._comp2_is_required = 'False' - self._comp2_externals = 'path/to/comp2.cfg' - - def _setup_comp1(self, config): - """Boiler plate construction of xml string for componet 1 - """ - config.add_section(self._comp1_name) - config.set(self._comp1_name, 'local_path', self._comp1_path) - config.set(self._comp1_name, 'protocol', self._comp1_protocol) - config.set(self._comp1_name, 'repo_url', self._comp1_url) - config.set(self._comp1_name, 'tag', self._comp1_tag) - config.set(self._comp1_name, 'required', self._comp1_is_required) - - def _setup_comp2(self, config): - """Boiler plate construction of xml string for componet 2 - """ - config.add_section(self._comp2_name) - config.set(self._comp2_name, 'local_path', self._comp2_path) - config.set(self._comp2_name, 'protocol', self._comp2_protocol) - config.set(self._comp2_name, 'repo_url', self._comp2_url) - config.set(self._comp2_name, 'branch', self._comp2_branch) - config.set(self._comp2_name, 'required', self._comp2_is_required) - config.set(self._comp2_name, 'externals', self._comp2_externals) - - @staticmethod - def _setup_externals_description(config): - """Add the required exernals description section - """ - - config.add_section(DESCRIPTION_SECTION) - config.set(DESCRIPTION_SECTION, VERSION_ITEM, '1.0.1') - - def _check_comp1(self, model): - """Test that component one was constructed correctly. - """ - self.assertTrue(self._comp1_name in model) - comp1 = model[self._comp1_name] - self.assertEqual(comp1[ExternalsDescription.PATH], self._comp1_path) - self.assertTrue(comp1[ExternalsDescription.REQUIRED]) - repo = comp1[ExternalsDescription.REPO] - self.assertEqual(repo[ExternalsDescription.PROTOCOL], - self._comp1_protocol) - self.assertEqual(repo[ExternalsDescription.REPO_URL], self._comp1_url) - self.assertEqual(repo[ExternalsDescription.TAG], self._comp1_tag) - self.assertEqual(EMPTY_STR, comp1[ExternalsDescription.EXTERNALS]) - - def _check_comp2(self, model): - """Test that component two was constucted correctly. - """ - self.assertTrue(self._comp2_name in model) - comp2 = model[self._comp2_name] - self.assertEqual(comp2[ExternalsDescription.PATH], self._comp2_path) - self.assertFalse(comp2[ExternalsDescription.REQUIRED]) - repo = comp2[ExternalsDescription.REPO] - self.assertEqual(repo[ExternalsDescription.PROTOCOL], - self._comp2_protocol) - self.assertEqual(repo[ExternalsDescription.REPO_URL], self._comp2_url) - self.assertEqual(repo[ExternalsDescription.BRANCH], self._comp2_branch) - self.assertEqual(self._comp2_externals, - comp2[ExternalsDescription.EXTERNALS]) - - def test_one_tag_required(self): - """Test that a component source with a tag is correctly parsed. - """ - config = config_parser() - self._setup_comp1(config) - self._setup_externals_description(config) - model = ExternalsDescriptionConfigV1(config) - print(model) - self._check_comp1(model) - - def test_one_branch_externals(self): - """Test that a component source with a branch is correctly parsed. - """ - config = config_parser() - self._setup_comp2(config) - self._setup_externals_description(config) - model = ExternalsDescriptionConfigV1(config) - print(model) - self._check_comp2(model) - - def test_two_sources(self): - """Test that multiple component sources are correctly parsed. - """ - config = config_parser() - self._setup_comp1(config) - self._setup_comp2(config) - self._setup_externals_description(config) - model = ExternalsDescriptionConfigV1(config) - print(model) - self._check_comp1(model) - self._check_comp2(model) - - def test_cfg_v1_reject_unknown_item(self): - """Test that a v1 description object will reject unknown items - """ - config = config_parser() - self._setup_comp1(config) - self._setup_externals_description(config) - config.set(self._comp1_name, 'junk', 'foobar') - with self.assertRaises(RuntimeError): - ExternalsDescriptionConfigV1(config) - - def test_cfg_v1_reject_v2(self): - """Test that a v1 description object won't try to parse a v2 file. - """ - config = config_parser() - self._setup_comp1(config) - self._setup_externals_description(config) - config.set(DESCRIPTION_SECTION, VERSION_ITEM, '2.0.1') - with self.assertRaises(RuntimeError): - ExternalsDescriptionConfigV1(config) - - def test_cfg_v1_reject_v1_too_new(self): - """Test that a v1 description object won't try to parse a v2 file. - """ - config = config_parser() - self._setup_comp1(config) - self._setup_externals_description(config) - config.set(DESCRIPTION_SECTION, VERSION_ITEM, '1.100.0') - with self.assertRaises(RuntimeError): - ExternalsDescriptionConfigV1(config) - - -class TestReadExternalsDescription(unittest.TestCase): - """Test the application logic of read_externals_description_file - """ - TMP_FAKE_DIR = 'fake' - - def setUp(self): - """Setup directory for tests - """ - if not os.path.exists(self.TMP_FAKE_DIR): - os.makedirs(self.TMP_FAKE_DIR) - - def tearDown(self): - """Cleanup tmp stuff on the file system - """ - if os.path.exists(self.TMP_FAKE_DIR): - shutil.rmtree(self.TMP_FAKE_DIR) - - def test_no_file_error(self): - """Test that a runtime error is raised when the file does not exist - - """ - root_dir = os.getcwd() - filename = 'this-file-should-not-exist' - with self.assertRaises(RuntimeError): - read_externals_description_file(root_dir, filename) - - def test_no_dir_error(self): - """Test that a runtime error is raised when the file does not exist - - """ - root_dir = '/path/to/some/repo' - filename = 'externals.cfg' - with self.assertRaises(RuntimeError): - read_externals_description_file(root_dir, filename) - - def test_no_invalid_error(self): - """Test that a runtime error is raised when the file format is invalid - - """ - root_dir = os.getcwd() - filename = 'externals.cfg' - file_path = os.path.join(root_dir, filename) - file_path = os.path.abspath(file_path) - contents = """ - -invalid file format -""" - with open(file_path, 'w') as fhandle: - fhandle.write(contents) - with self.assertRaises(RuntimeError): - read_externals_description_file(root_dir, filename) - os.remove(file_path) - - -class TestCreateExternalsDescription(unittest.TestCase): - """Test the application logic of creat_externals_description - """ - - def setUp(self): - """Create config object used as basis for all tests - """ - self._config = config_parser() - self._gmconfig = config_parser() - self.setup_config() - - def setup_config(self): - """Boiler plate construction of xml string for componet 1 - """ - # Create a standard externals config with a single external - name = 'test' - self._config.add_section(name) - self._config.set(name, ExternalsDescription.PATH, 'externals') - self._config.set(name, ExternalsDescription.PROTOCOL, 'git') - self._config.set(name, ExternalsDescription.REPO_URL, '/path/to/repo') - self._config.set(name, ExternalsDescription.TAG, 'test_tag') - self._config.set(name, ExternalsDescription.REQUIRED, 'True') - - self._config.add_section(DESCRIPTION_SECTION) - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, '1.0.0') - - # Create a .gitmodules test - name = 'submodule "gitmodules_test"' - self._gmconfig.add_section(name) - self._gmconfig.set(name, "path", 'externals/test') - self._gmconfig.set(name, "url", '/path/to/repo') - # NOTE(goldy, 2019-03) Should test other possible keywords such as - # fetchRecurseSubmodules, ignore, and shallow - - @staticmethod - def setup_dict_config(): - """Create the full container dictionary with simple and mixed use - externals - - """ - rdatat = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: 'simple-ext.git', - ExternalsDescription.TAG: 'tag1'} - rdatab = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: 'simple-ext.git', - ExternalsDescription.BRANCH: 'feature2'} - rdatam = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: 'mixed-cont-ext.git', - ExternalsDescription.BRANCH: 'master'} - desc = {'simp_tag': {ExternalsDescription.REQUIRED: True, - ExternalsDescription.PATH: 'simp_tag', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdatat}, - 'simp_branch' : {ExternalsDescription.REQUIRED: True, - ExternalsDescription.PATH: 'simp_branch', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdatab}, - 'simp_opt': {ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'simp_opt', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdatat}, - 'mixed_req': {ExternalsDescription.REQUIRED: True, - ExternalsDescription.PATH: 'mixed_req', - ExternalsDescription.EXTERNALS: 'sub-ext.cfg', - ExternalsDescription.REPO: rdatam}} - - return desc - - def test_cfg_v1_ok(self): - """Test that a correct cfg v1 object is created by create_externals_description - - """ - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, '1.0.3') - ext = create_externals_description(self._config, model_format='cfg') - self.assertIsInstance(ext, ExternalsDescriptionConfigV1) - - def test_cfg_v1_unknown_version(self): - """Test that a config file with unknown schema version is rejected by - create_externals_description. - - """ - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, '100.0.3') - with self.assertRaises(RuntimeError): - create_externals_description(self._config, model_format='cfg') - - def test_dict(self): - """Test that a correct cfg v1 object is created by create_externals_description - - """ - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: '/path/to/repo', - ExternalsDescription.TAG: 'tagv1', - } - - desc = { - 'test': { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: '../fake', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, }, - } - - ext = create_externals_description(desc, model_format='dict') - self.assertIsInstance(ext, ExternalsDescriptionDict) - - def test_cfg_component_dict(self): - """Verify that create_externals_description works with a dictionary - """ - # create the top level externals file - desc = self.setup_dict_config() - # Check external with all repos - external = create_externals_description(desc, model_format='dict') - self.assertIsInstance(external, ExternalsDescriptionDict) - self.assertTrue('simp_tag' in external) - self.assertTrue('simp_branch' in external) - self.assertTrue('simp_opt' in external) - self.assertTrue('mixed_req' in external) - - def test_cfg_exclude_component_dict(self): - """Verify that exclude component checkout works with a dictionary - """ - # create the top level externals file - desc = self.setup_dict_config() - # Test an excluded repo - external = create_externals_description(desc, model_format='dict', - exclude=['simp_tag', - 'simp_opt']) - self.assertIsInstance(external, ExternalsDescriptionDict) - self.assertFalse('simp_tag' in external) - self.assertTrue('simp_branch' in external) - self.assertFalse('simp_opt' in external) - self.assertTrue('mixed_req' in external) - - def test_cfg_opt_component_dict(self): - """Verify that exclude component checkout works with a dictionary - """ - # create the top level externals file - desc = self.setup_dict_config() - # Test an excluded repo - external = create_externals_description(desc, model_format='dict', - components=['simp_tag', - 'simp_opt']) - self.assertIsInstance(external, ExternalsDescriptionDict) - self.assertTrue('simp_tag' in external) - self.assertFalse('simp_branch' in external) - self.assertTrue('simp_opt' in external) - self.assertFalse('mixed_req' in external) - - def test_cfg_unknown_version(self): - """Test that a runtime error is raised when an unknown file version is - received - - """ - self._config.set(DESCRIPTION_SECTION, VERSION_ITEM, '123.456.789') - with self.assertRaises(RuntimeError): - create_externals_description(self._config, model_format='cfg') - - def test_cfg_unknown_format(self): - """Test that a runtime error is raised when an unknown format string is - received - - """ - with self.assertRaises(RuntimeError): - create_externals_description(self._config, model_format='unknown') - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_externals_status.py b/manage_externals/test/test_unit_externals_status.py deleted file mode 100644 index f019514e9e..0000000000 --- a/manage_externals/test/test_unit_externals_status.py +++ /dev/null @@ -1,299 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for the manic external status reporting module. - -Note: this script assumes the path to the manic package is already in -the python path. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import unittest - -from manic.externals_status import ExternalStatus - - -class TestStatusObject(unittest.TestCase): - """Verify that the Status object behaives as expected. - """ - - def test_exists_empty_all(self): - """If the repository sync-state is empty (doesn't exist), and there is no - clean state, then it is considered not to exist. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.EMPTY - stat.clean_state = ExternalStatus.DEFAULT - exists = stat.exists() - self.assertFalse(exists) - - stat.clean_state = ExternalStatus.EMPTY - exists = stat.exists() - self.assertFalse(exists) - - stat.clean_state = ExternalStatus.UNKNOWN - exists = stat.exists() - self.assertFalse(exists) - - # this state represtens an internal logic error in how the - # repo status was determined. - stat.clean_state = ExternalStatus.STATUS_OK - exists = stat.exists() - self.assertTrue(exists) - - # this state represtens an internal logic error in how the - # repo status was determined. - stat.clean_state = ExternalStatus.DIRTY - exists = stat.exists() - self.assertTrue(exists) - - def test_exists_default_all(self): - """If the repository sync-state is default, then it is considered to exist - regardless of clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.DEFAULT - stat.clean_state = ExternalStatus.DEFAULT - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.EMPTY - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.UNKNOWN - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.STATUS_OK - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.DIRTY - exists = stat.exists() - self.assertTrue(exists) - - def test_exists_unknown_all(self): - """If the repository sync-state is unknown, then it is considered to exist - regardless of clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.UNKNOWN - stat.clean_state = ExternalStatus.DEFAULT - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.EMPTY - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.UNKNOWN - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.STATUS_OK - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.DIRTY - exists = stat.exists() - self.assertTrue(exists) - - def test_exists_modified_all(self): - """If the repository sync-state is modified, then it is considered to exist - regardless of clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.MODEL_MODIFIED - stat.clean_state = ExternalStatus.DEFAULT - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.EMPTY - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.UNKNOWN - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.STATUS_OK - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.DIRTY - exists = stat.exists() - self.assertTrue(exists) - - def test_exists_ok_all(self): - """If the repository sync-state is ok, then it is considered to exist - regardless of clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.STATUS_OK - stat.clean_state = ExternalStatus.DEFAULT - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.EMPTY - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.UNKNOWN - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.STATUS_OK - exists = stat.exists() - self.assertTrue(exists) - - stat.clean_state = ExternalStatus.DIRTY - exists = stat.exists() - self.assertTrue(exists) - - def test_update_ok_all(self): - """If the repository in-sync is ok, then it is safe to - update only if clean state is ok - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.STATUS_OK - stat.clean_state = ExternalStatus.DEFAULT - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.EMPTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.UNKNOWN - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.STATUS_OK - safe_to_update = stat.safe_to_update() - self.assertTrue(safe_to_update) - - stat.clean_state = ExternalStatus.DIRTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - def test_update_modified_all(self): - """If the repository in-sync is modified, then it is safe to - update only if clean state is ok - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.MODEL_MODIFIED - stat.clean_state = ExternalStatus.DEFAULT - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.EMPTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.UNKNOWN - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.STATUS_OK - safe_to_update = stat.safe_to_update() - self.assertTrue(safe_to_update) - - stat.clean_state = ExternalStatus.DIRTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - def test_update_unknown_all(self): - """If the repository in-sync is unknown, then it is not safe to - update, regardless of the clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.UNKNOWN - stat.clean_state = ExternalStatus.DEFAULT - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.EMPTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.UNKNOWN - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.STATUS_OK - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.DIRTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - def test_update_default_all(self): - """If the repository in-sync is default, then it is not safe to - update, regardless of the clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.UNKNOWN - stat.clean_state = ExternalStatus.DEFAULT - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.EMPTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.UNKNOWN - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.STATUS_OK - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.DIRTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - def test_update_empty_all(self): - """If the repository in-sync is empty, then it is not safe to - update, regardless of the clean state. - - """ - stat = ExternalStatus() - stat.sync_state = ExternalStatus.UNKNOWN - stat.clean_state = ExternalStatus.DEFAULT - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.EMPTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.UNKNOWN - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.STATUS_OK - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - stat.clean_state = ExternalStatus.DIRTY - safe_to_update = stat.safe_to_update() - self.assertFalse(safe_to_update) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_repository.py b/manage_externals/test/test_unit_repository.py deleted file mode 100644 index 1b93861834..0000000000 --- a/manage_externals/test/test_unit_repository.py +++ /dev/null @@ -1,208 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Note: this script assume the path to the checkout_externals.py module is -already in the python path. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import unittest - -from manic.repository_factory import create_repository -from manic.repository_git import GitRepository -from manic.repository_svn import SvnRepository -from manic.repository import Repository -from manic.externals_description import ExternalsDescription -from manic.global_constants import EMPTY_STR - - -class TestCreateRepositoryDict(unittest.TestCase): - """Test the create_repository functionality to ensure it returns the - propper type of repository and errors for unknown repository - types. - - """ - - def setUp(self): - """Common data needed for all tests in this class - """ - self._name = 'test_name' - self._repo = {ExternalsDescription.PROTOCOL: None, - ExternalsDescription.REPO_URL: 'junk_root', - ExternalsDescription.TAG: 'junk_tag', - ExternalsDescription.BRANCH: EMPTY_STR, - ExternalsDescription.HASH: EMPTY_STR, - ExternalsDescription.SPARSE: EMPTY_STR, } - - def test_create_repo_git(self): - """Verify that several possible names for the 'git' protocol - create git repository objects. - - """ - protocols = ['git', 'GIT', 'Git', ] - for protocol in protocols: - self._repo[ExternalsDescription.PROTOCOL] = protocol - repo = create_repository(self._name, self._repo) - self.assertIsInstance(repo, GitRepository) - - def test_create_repo_svn(self): - """Verify that several possible names for the 'svn' protocol - create svn repository objects. - """ - protocols = ['svn', 'SVN', 'Svn', ] - for protocol in protocols: - self._repo[ExternalsDescription.PROTOCOL] = protocol - repo = create_repository(self._name, self._repo) - self.assertIsInstance(repo, SvnRepository) - - def test_create_repo_externals_only(self): - """Verify that an externals only repo returns None. - """ - protocols = ['externals_only', ] - for protocol in protocols: - self._repo[ExternalsDescription.PROTOCOL] = protocol - repo = create_repository(self._name, self._repo) - self.assertEqual(None, repo) - - def test_create_repo_unsupported(self): - """Verify that an unsupported protocol generates a runtime error. - """ - protocols = ['not_a_supported_protocol', ] - for protocol in protocols: - self._repo[ExternalsDescription.PROTOCOL] = protocol - with self.assertRaises(RuntimeError): - create_repository(self._name, self._repo) - - -class TestRepository(unittest.TestCase): - """Test the externals description processing used to create the Repository - base class shared by protocol specific repository classes. - - """ - - def test_tag(self): - """Test creation of a repository object with a tag - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - tag = 'test_tag' - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.TAG: tag, - ExternalsDescription.BRANCH: EMPTY_STR, - ExternalsDescription.HASH: EMPTY_STR, - ExternalsDescription.SPARSE: EMPTY_STR, } - repo = Repository(name, repo_info) - print(repo.__dict__) - self.assertEqual(repo.tag(), tag) - self.assertEqual(repo.url(), url) - - def test_branch(self): - """Test creation of a repository object with a branch - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - branch = 'test_branch' - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.BRANCH: branch, - ExternalsDescription.TAG: EMPTY_STR, - ExternalsDescription.HASH: EMPTY_STR, - ExternalsDescription.SPARSE: EMPTY_STR, } - repo = Repository(name, repo_info) - print(repo.__dict__) - self.assertEqual(repo.branch(), branch) - self.assertEqual(repo.url(), url) - - def test_hash(self): - """Test creation of a repository object with a hash - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - ref = 'deadc0de' - sparse = EMPTY_STR - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.BRANCH: EMPTY_STR, - ExternalsDescription.TAG: EMPTY_STR, - ExternalsDescription.HASH: ref, - ExternalsDescription.SPARSE: sparse, } - repo = Repository(name, repo_info) - print(repo.__dict__) - self.assertEqual(repo.hash(), ref) - self.assertEqual(repo.url(), url) - - def test_tag_branch(self): - """Test creation of a repository object with a tag and branch raises a - runtimer error. - - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - branch = 'test_branch' - tag = 'test_tag' - ref = EMPTY_STR - sparse = EMPTY_STR - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.BRANCH: branch, - ExternalsDescription.TAG: tag, - ExternalsDescription.HASH: ref, - ExternalsDescription.SPARSE: sparse, } - with self.assertRaises(RuntimeError): - Repository(name, repo_info) - - def test_tag_branch_hash(self): - """Test creation of a repository object with a tag, branch and hash raises a - runtimer error. - - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - branch = 'test_branch' - tag = 'test_tag' - ref = 'deadc0de' - sparse = EMPTY_STR - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.BRANCH: branch, - ExternalsDescription.TAG: tag, - ExternalsDescription.HASH: ref, - ExternalsDescription.SPARSE: sparse, } - with self.assertRaises(RuntimeError): - Repository(name, repo_info) - - def test_no_tag_no_branch(self): - """Test creation of a repository object without a tag or branch raises a - runtimer error. - - """ - name = 'test_repo' - protocol = 'test_protocol' - url = 'test_url' - branch = EMPTY_STR - tag = EMPTY_STR - ref = EMPTY_STR - sparse = EMPTY_STR - repo_info = {ExternalsDescription.PROTOCOL: protocol, - ExternalsDescription.REPO_URL: url, - ExternalsDescription.BRANCH: branch, - ExternalsDescription.TAG: tag, - ExternalsDescription.HASH: ref, - ExternalsDescription.SPARSE: sparse, } - with self.assertRaises(RuntimeError): - Repository(name, repo_info) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_repository_git.py b/manage_externals/test/test_unit_repository_git.py deleted file mode 100644 index 1c01098acf..0000000000 --- a/manage_externals/test/test_unit_repository_git.py +++ /dev/null @@ -1,811 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Note: this script assume the path to the checkout_externals.py module is -already in the python path. - -""" -# pylint: disable=too-many-lines,protected-access - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import os -import shutil -import unittest - -from manic.repository_git import GitRepository -from manic.externals_status import ExternalStatus -from manic.externals_description import ExternalsDescription -from manic.externals_description import ExternalsDescriptionDict -from manic.global_constants import EMPTY_STR - -# NOTE(bja, 2017-11) order is important here. origin should be a -# subset of other to trap errors on processing remotes! -GIT_REMOTE_OUTPUT_ORIGIN_UPSTREAM = ''' -upstream /path/to/other/repo (fetch) -upstream /path/to/other/repo (push) -other /path/to/local/repo2 (fetch) -other /path/to/local/repo2 (push) -origin /path/to/local/repo (fetch) -origin /path/to/local/repo (push) -''' - - -class TestGitRepositoryCurrentRef(unittest.TestCase): - """test the current_ref command on a git repository - """ - - def setUp(self): - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - '/path/to/local/repo', - ExternalsDescription.TAG: - 'tag1', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'junk', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = GitRepository('test', repo) - - # - # mock methods replacing git system calls - # - @staticmethod - def _git_current_branch(branch_found, branch_name): - """Return a function that takes the place of - repo._git_current_branch, which returns the given output.""" - def my_git_current_branch(dirname): - """mock function that can take the place of repo._git_current_branch""" - return branch_found, branch_name - return my_git_current_branch - - @staticmethod - def _git_current_tag(tag_found, tag_name): - """Return a function that takes the place of - repo._git_current_tag, which returns the given output.""" - def my_git_current_tag(dirname): - """mock function that can take the place of repo._git_current_tag""" - return tag_found, tag_name - return my_git_current_tag - - @staticmethod - def _git_current_hash(hash_found, hash_name): - """Return a function that takes the place of - repo._git_current_hash, which returns the given output.""" - def my_git_current_hash(dirname): - """mock function that can take the place of repo._git_current_hash""" - return hash_found, hash_name - return my_git_current_hash - - # ------------------------------------------------------------------------ - # Begin tests - # ------------------------------------------------------------------------ - - def test_ref_branch(self): - """Test that we correctly identify we are on a branch - """ - self._repo._git_current_branch = self._git_current_branch( - True, 'feature3') - self._repo._git_current_tag = self._git_current_tag(True, 'foo_tag') - self._repo._git_current_hash = self._git_current_hash(True, 'abc123') - expected = 'foo_tag (branch feature3)' - result = self._repo._current_ref(os.getcwd()) - self.assertEqual(result, expected) - - def test_ref_detached_tag(self): - """Test that we correctly identify that the ref is detached at a tag - """ - self._repo._git_current_branch = self._git_current_branch(False, '') - self._repo._git_current_tag = self._git_current_tag(True, 'foo_tag') - self._repo._git_current_hash = self._git_current_hash(True, 'abc123') - expected = 'foo_tag' - result = self._repo._current_ref(os.getcwd()) - self.assertEqual(result, expected) - - def test_ref_detached_hash(self): - """Test that we can identify ref is detached at a hash - - """ - self._repo._git_current_branch = self._git_current_branch(False, '') - self._repo._git_current_tag = self._git_current_tag(False, '') - self._repo._git_current_hash = self._git_current_hash(True, 'abc123') - expected = 'abc123' - result = self._repo._current_ref(os.getcwd()) - self.assertEqual(result, expected) - - def test_ref_none(self): - """Test that we correctly identify that we're not in a git repo. - """ - self._repo._git_current_branch = self._git_current_branch(False, '') - self._repo._git_current_tag = self._git_current_tag(False, '') - self._repo._git_current_hash = self._git_current_hash(False, '') - result = self._repo._current_ref(os.getcwd()) - self.assertEqual(result, EMPTY_STR) - - -class TestGitRepositoryCheckSync(unittest.TestCase): - """Test whether the GitRepository _check_sync_logic functionality is - correct. - - Note: there are a lot of combinations of state: - - - external description - tag, branch - - - working copy - - doesn't exist (not checked out) - - exists, no git info - incorrect protocol, e.g. svn, or tarball? - - exists, git info - - as expected: - - different from expected: - - detached tag, - - detached hash, - - detached branch (compare remote and branch), - - tracking branch (compare remote and branch), - - same remote - - different remote - - untracked branch - - Test list: - - doesn't exist - - exists no git info - - - num_external * (working copy expected + num_working copy different) - - total tests = 16 - - """ - - # NOTE(bja, 2017-11) pylint complains about long method names, but - # it is hard to differentiate tests without making them more - # cryptic. Also complains about too many public methods, but it - # doesn't really make sense to break this up. - # pylint: disable=invalid-name,too-many-public-methods - - TMP_FAKE_DIR = 'fake' - TMP_FAKE_GIT_DIR = os.path.join(TMP_FAKE_DIR, '.git') - - def setUp(self): - """Setup reusable git repository object - """ - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - '/path/to/local/repo', - ExternalsDescription.TAG: 'tag1', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: self.TMP_FAKE_DIR, - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = GitRepository('test', repo) - # The unit tests here don't care about the result of - # _current_ref, but we replace it here so that we don't need to - # worry about calling a possibly slow and possibly - # error-producing command (since _current_ref calls various git - # functions): - self._repo._current_ref = self._current_ref_empty - self._create_tmp_git_dir() - - # We have to override this class method rather than the self._repo - # instance method because it is called via - # GitRepository._remote_name_for_url, which is itself a @classmethod - # calls cls._git_remote_verbose(). - self._orignal_git_remote_verbose = GitRepository._git_remote_verbose - GitRepository._git_remote_verbose = self._git_remote_origin_upstream - def tearDown(self): - """Cleanup tmp stuff on the file system - """ - self._remove_tmp_git_dir() - - GitRepository._git_remote_verbose = self._orignal_git_remote_verbose - - def _create_tmp_git_dir(self): - """Create a temporary fake git directory for testing purposes. - """ - if not os.path.exists(self.TMP_FAKE_GIT_DIR): - os.makedirs(self.TMP_FAKE_GIT_DIR) - - def _remove_tmp_git_dir(self): - """Remove the temporary fake git directory - """ - if os.path.exists(self.TMP_FAKE_DIR): - shutil.rmtree(self.TMP_FAKE_DIR) - - # - # mock methods replacing git system calls - # - @staticmethod - def _current_ref_empty(dirname): - """Return an empty string. - - Drop-in for GitRepository._current_ref - """ - return EMPTY_STR - - @staticmethod - def _git_remote_origin_upstream(dirname): - """Return an info string that is a checkout hash. - - Drop-in for GitRepository._git_remote_verbose. - """ - return GIT_REMOTE_OUTPUT_ORIGIN_UPSTREAM - - @staticmethod - def _git_current_hash(myhash): - """Return a function that takes the place of repo._git_current_hash, - which returns the given hash - """ - def my_git_current_hash(dirname): - """mock function that can take the place of repo._git_current_hash""" - return 0, myhash - return my_git_current_hash - - def _git_revparse_commit(self, expected_ref, mystatus, myhash): - """Return a function that takes the place of - repo._git_revparse_commit, which returns a tuple: - (mystatus, myhash). - - Expects the passed-in ref to equal expected_ref - - status = 0 implies success, non-zero implies failure - """ - def my_git_revparse_commit(ref, dirname): - """mock function that can take the place of repo._git_revparse_commit""" - self.assertEqual(expected_ref, ref) - return mystatus, myhash - return my_git_revparse_commit - - # ---------------------------------------------------------------- - # - # Tests where working copy doesn't exist or is invalid - # - # ---------------------------------------------------------------- - def test_sync_dir_not_exist(self): - """Test that a directory that doesn't exist returns an error status - - Note: the Repository classes should be prevented from ever - working on an empty directory by the _Source object. - - """ - stat = ExternalStatus() - self._repo._check_sync(stat, 'invalid_directory_name') - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_ERROR) - # check_dir should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_dir_exist_no_git_info(self): - """Test that a non-existent git repo returns an unknown status - """ - stat = ExternalStatus() - self._repo._tag = 'tag1' - self._repo._git_current_hash = self._git_current_hash('') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'tag1', 1, '') - self._repo._check_sync(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.UNKNOWN) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - # ------------------------------------------------------------------------ - # - # Tests where version in configuration file is not a valid reference - # - # ------------------------------------------------------------------------ - - def test_sync_invalid_reference(self): - """Test that an invalid reference returns out-of-sync - """ - stat = ExternalStatus() - self._repo._tag = 'tag1' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'tag1', 1, '') - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - # ---------------------------------------------------------------- - # - # Tests where external description specifies a tag - # - # ---------------------------------------------------------------- - def test_sync_tag_on_same_hash(self): - """Test expect tag on same hash --> status ok - - """ - stat = ExternalStatus() - self._repo._tag = 'tag1' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'tag1', 0, 'abc123') - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_OK) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_tag_on_different_hash(self): - """Test expect tag on a different hash --> status modified - - """ - stat = ExternalStatus() - self._repo._tag = 'tag1' - self._repo._git_current_hash = self._git_current_hash('def456') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'tag1', 0, 'abc123') - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - # ---------------------------------------------------------------- - # - # Tests where external description specifies a hash - # - # ---------------------------------------------------------------- - def test_sync_hash_on_same_hash(self): - """Test expect hash on same hash --> status ok - - """ - stat = ExternalStatus() - self._repo._tag = '' - self._repo._hash = 'abc' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'abc', 0, 'abc123') - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_OK) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_hash_on_different_hash(self): - """Test expect hash on a different hash --> status modified - - """ - stat = ExternalStatus() - self._repo._tag = '' - self._repo._hash = 'abc' - self._repo._git_current_hash = self._git_current_hash('def456') - self._repo._git_revparse_commit = self._git_revparse_commit( - 'abc', 0, 'abc123') - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - # ---------------------------------------------------------------- - # - # Tests where external description specifies a branch - # - # ---------------------------------------------------------------- - def test_sync_branch_on_same_hash(self): - """Test expect branch on same hash --> status ok - - """ - stat = ExternalStatus() - self._repo._branch = 'feature-2' - self._repo._tag = '' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('origin/feature-2', 0, 'abc123')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_OK) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_branch_on_diff_hash(self): - """Test expect branch on diff hash --> status modified - - """ - stat = ExternalStatus() - self._repo._branch = 'feature-2' - self._repo._tag = '' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('origin/feature-2', 0, 'def456')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_branch_diff_remote(self): - """Test _remote_name_for_url with a different remote - - """ - stat = ExternalStatus() - self._repo._branch = 'feature-2' - self._repo._tag = '' - self._repo._url = '/path/to/other/repo' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('upstream/feature-2', 0, 'def456')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - # The test passes if _git_revparse_commit is called with the - # expected argument - - def test_sync_branch_diff_remote2(self): - """Test _remote_name_for_url with a different remote - - """ - stat = ExternalStatus() - self._repo._branch = 'feature-2' - self._repo._tag = '' - self._repo._url = '/path/to/local/repo2' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('other/feature-2', 0, 'def789')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - # The test passes if _git_revparse_commit is called with the - # expected argument - - def test_sync_branch_on_unknown_remote(self): - """Test expect branch, but remote is unknown --> status modified - - """ - stat = ExternalStatus() - self._repo._branch = 'feature-2' - self._repo._tag = '' - self._repo._url = '/path/to/unknown/repo' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('unknown_remote/feature-2', 1, '')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_sync_branch_on_untracked_local(self): - """Test expect branch, on untracked branch in local repo --> status ok - - Setting the externals description to '.' indicates that the - user only wants to consider the current local repo state - without fetching from remotes. This is required to preserve - the current branch of a repository during an update. - - """ - stat = ExternalStatus() - self._repo._branch = 'feature3' - self._repo._tag = '' - self._repo._url = '.' - self._repo._git_current_hash = self._git_current_hash('abc123') - self._repo._git_revparse_commit = ( - self._git_revparse_commit('feature3', 0, 'abc123')) - self._repo._check_sync_logic(stat, self.TMP_FAKE_DIR) - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_OK) - # check_sync should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - -class TestGitStatusPorcelain(unittest.TestCase): - """Test parsing of output from git status --porcelain=v1 -z - """ - # pylint: disable=C0103 - GIT_STATUS_PORCELAIN_V1_ALL = ( - r' D INSTALL\0MM Makefile\0M README.md\0R cmakelists.txt\0' - r'CMakeLists.txt\0D commit-message-template.txt\0A stuff.txt\0' - r'?? junk.txt') - - GIT_STATUS_PORCELAIN_CLEAN = r'' - - def test_porcelain_status_dirty(self): - """Verify that git status output is considered dirty when there are - listed files. - - """ - git_output = self.GIT_STATUS_PORCELAIN_V1_ALL - is_dirty = GitRepository._status_v1z_is_dirty(git_output) - self.assertTrue(is_dirty) - - def test_porcelain_status_clean(self): - """Verify that git status output is considered clean when there are no - listed files. - - """ - git_output = self.GIT_STATUS_PORCELAIN_CLEAN - is_dirty = GitRepository._status_v1z_is_dirty(git_output) - self.assertFalse(is_dirty) - - -class TestGitCreateRemoteName(unittest.TestCase): - """Test the create_remote_name method on the GitRepository class - """ - - def setUp(self): - """Common infrastructure for testing _create_remote_name - """ - self._rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - 'empty', - ExternalsDescription.TAG: - 'very_useful_tag', - ExternalsDescription.BRANCH: EMPTY_STR, - ExternalsDescription.HASH: EMPTY_STR, - ExternalsDescription.SPARSE: EMPTY_STR, } - self._repo = GitRepository('test', self._rdata) - - def test_remote_git_proto(self): - """Test remote with git protocol - """ - self._repo._url = 'git@git.github.com:very_nice_org/useful_repo' - remote_name = self._repo._create_remote_name() - self.assertEqual(remote_name, 'very_nice_org_useful_repo') - - def test_remote_https_proto(self): - """Test remote with git protocol - """ - self._repo._url = 'https://www.github.com/very_nice_org/useful_repo' - remote_name = self._repo._create_remote_name() - self.assertEqual(remote_name, 'very_nice_org_useful_repo') - - def test_remote_local_abs(self): - """Test remote with git protocol - """ - self._repo._url = '/path/to/local/repositories/useful_repo' - remote_name = self._repo._create_remote_name() - self.assertEqual(remote_name, 'repositories_useful_repo') - - def test_remote_local_rel(self): - """Test remote with git protocol - """ - os.environ['TEST_VAR'] = '/my/path/to/repos' - self._repo._url = '${TEST_VAR}/../../useful_repo' - remote_name = self._repo._create_remote_name() - self.assertEqual(remote_name, 'path_useful_repo') - del os.environ['TEST_VAR'] - - -class TestVerifyTag(unittest.TestCase): - """Test logic verifying that a tag exists and is unique - - """ - - def setUp(self): - """Setup reusable git repository object - """ - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - '/path/to/local/repo', - ExternalsDescription.TAG: 'tag1', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'tmp', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = GitRepository('test', repo) - - @staticmethod - def _shell_true(*args, **kwargs): - return 0 - - @staticmethod - def _shell_false(*args, **kwargs): - return 1 - - @staticmethod - def _mock_revparse_commit(ref, dirname): - _ = ref - return (TestValidRef._shell_true, '97ebc0e0deadc0de') - - @staticmethod - def _mock_revparse_commit_false(ref, dirname): - _ = ref - return (TestValidRef._shell_false, '97ebc0e0deadc0de') - - def test_tag_not_tag_branch_commit(self): - """Verify a non-tag returns false - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit_false - self._repo._tag = 'something' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertFalse(received) - - def test_tag_not_tag(self): - """Verify a non-tag, untracked remote returns false - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_true - self._repo._git_lsremote_branch = self._shell_true - self._repo._git_revparse_commit = self._mock_revparse_commit_false - self._repo._tag = 'tag1' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertFalse(received) - - def test_tag_indeterminant(self): - """Verify an indeterminant tag/branch returns false - """ - self._repo._git_showref_tag = self._shell_true - self._repo._git_showref_branch = self._shell_true - self._repo._git_lsremote_branch = self._shell_true - self._repo._git_revparse_commit = self._mock_revparse_commit - self._repo._tag = 'something' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertFalse(received) - - def test_tag_is_unique(self): - """Verify a unique tag match returns true - """ - self._repo._git_showref_tag = self._shell_true - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit - self._repo._tag = 'tag1' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertTrue(received) - - def test_tag_is_not_hash(self): - """Verify a commit hash is not classified as a tag - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit - self._repo._tag = '97ebc0e0' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertFalse(received) - - def test_hash_is_commit(self): - """Verify a commit hash is not classified as a tag - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit - self._repo._tag = '97ebc0e0' - remote_name = 'origin' - received, _ = self._repo._is_unique_tag(self._repo._tag, remote_name, - os.getcwd()) - self.assertFalse(received) - - -class TestValidRef(unittest.TestCase): - """Test logic verifying that a reference is a valid tag, branch or sha1 - - """ - - def setUp(self): - """Setup reusable git repository object - """ - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'git', - ExternalsDescription.REPO_URL: - '/path/to/local/repo', - ExternalsDescription.TAG: 'tag1', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'tmp', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = GitRepository('test', repo) - - @staticmethod - def _shell_true(url, remote=None): - _ = url - _ = remote - return 0 - - @staticmethod - def _shell_false(url, remote=None): - _ = url - _ = remote - return 1 - - @staticmethod - def _mock_revparse_commit_false(ref, dirname): - _ = ref - return (TestValidRef._shell_false, '') - - @staticmethod - def _mock_revparse_commit_true(ref, dirname): - _ = ref - _ = dirname - return (TestValidRef._shell_true, '') - - def test_valid_ref_is_invalid(self): - """Verify an invalid reference raises an exception - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit_false - self._repo._tag = 'invalid_ref' - with self.assertRaises(RuntimeError): - self._repo._check_for_valid_ref(self._repo._tag, - remote_name=None, - dirname=os.getcwd()) - - def test_valid_tag(self): - """Verify a valid tag return true - """ - self._repo._git_showref_tag = self._shell_true - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit_true - self._repo._tag = 'tag1' - received = self._repo._check_for_valid_ref(self._repo._tag, - remote_name=None, - dirname=os.getcwd()) - self.assertTrue(received) - - def test_valid_branch(self): - """Verify a valid tag return true - """ - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_true - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = self._mock_revparse_commit_true - self._repo._tag = 'tag1' - received = self._repo._check_for_valid_ref(self._repo._tag, - remote_name=None, - dirname=os.getcwd()) - self.assertTrue(received) - - def test_valid_hash(self): - """Verify a valid hash return true - """ - def _mock_revparse_commit_true(ref, dirname): - _ = ref - return (0, '56cc0b539426eb26810af9e') - - self._repo._git_showref_tag = self._shell_false - self._repo._git_showref_branch = self._shell_false - self._repo._git_lsremote_branch = self._shell_false - self._repo._git_revparse_commit = _mock_revparse_commit_true - self._repo._hash = '56cc0b5394' - received = self._repo._check_for_valid_ref(self._repo._hash, - remote_name=None, - dirname=os.getcwd()) - self.assertTrue(received) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_repository_svn.py b/manage_externals/test/test_unit_repository_svn.py deleted file mode 100755 index d9309df7f6..0000000000 --- a/manage_externals/test/test_unit_repository_svn.py +++ /dev/null @@ -1,501 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Note: this script assume the path to the checkout_externals.py module is -already in the python path. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import unittest - -from manic.repository_svn import SvnRepository -from manic.externals_status import ExternalStatus -from manic.externals_description import ExternalsDescription -from manic.externals_description import ExternalsDescriptionDict -from manic.global_constants import EMPTY_STR - -# pylint: disable=W0212 - -SVN_INFO_MOSART = """Path: components/mosart -Working Copy Root Path: /Users/andreb/projects/ncar/git-conversion/clm-dev-experimental/components/mosart -URL: https://svn-ccsm-models.cgd.ucar.edu/mosart/trunk_tags/mosart1_0_26 -Relative URL: ^/mosart/trunk_tags/mosart1_0_26 -Repository Root: https://svn-ccsm-models.cgd.ucar.edu -Repository UUID: fe37f545-8307-0410-aea5-b40df96820b5 -Revision: 86711 -Node Kind: directory -Schedule: normal -Last Changed Author: erik -Last Changed Rev: 86031 -Last Changed Date: 2017-07-07 12:28:10 -0600 (Fri, 07 Jul 2017) -""" -SVN_INFO_CISM = """ -Path: components/cism -Working Copy Root Path: /Users/andreb/projects/ncar/git-conversion/clm-dev-experimental/components/cism -URL: https://svn-ccsm-models.cgd.ucar.edu/glc/trunk_tags/cism2_1_37 -Relative URL: ^/glc/trunk_tags/cism2_1_37 -Repository Root: https://svn-ccsm-models.cgd.ucar.edu -Repository UUID: fe37f545-8307-0410-aea5-b40df96820b5 -Revision: 86711 -Node Kind: directory -Schedule: normal -Last Changed Author: sacks -Last Changed Rev: 85704 -Last Changed Date: 2017-06-15 05:59:28 -0600 (Thu, 15 Jun 2017) -""" - - -class TestSvnRepositoryCheckURL(unittest.TestCase): - """Verify that the svn_check_url function is working as expected. - """ - - def setUp(self): - """Setup reusable svn repository object - """ - self._name = 'component' - rdata = {ExternalsDescription.PROTOCOL: 'svn', - ExternalsDescription.REPO_URL: - 'https://svn-ccsm-models.cgd.ucar.edu', - ExternalsDescription.TAG: - 'mosart/trunk_tags/mosart1_0_26', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'junk', - ExternalsDescription.EXTERNALS: '', - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = SvnRepository('test', repo) - - def test_check_url_same(self): - """Test that we correctly identify that the correct URL. - """ - svn_output = SVN_INFO_MOSART - expected_url = self._repo.url() - result, current_version = \ - self._repo._check_url(svn_output, expected_url) - self.assertEqual(result, ExternalStatus.STATUS_OK) - self.assertEqual(current_version, 'mosart/trunk_tags/mosart1_0_26') - - def test_check_url_different(self): - """Test that we correctly reject an incorrect URL. - """ - svn_output = SVN_INFO_CISM - expected_url = self._repo.url() - result, current_version = \ - self._repo._check_url(svn_output, expected_url) - self.assertEqual(result, ExternalStatus.MODEL_MODIFIED) - self.assertEqual(current_version, 'glc/trunk_tags/cism2_1_37') - - def test_check_url_none(self): - """Test that we can handle an empty string for output, e.g. not an svn - repo. - - """ - svn_output = EMPTY_STR - expected_url = self._repo.url() - result, current_version = \ - self._repo._check_url(svn_output, expected_url) - self.assertEqual(result, ExternalStatus.UNKNOWN) - self.assertEqual(current_version, '') - - -class TestSvnRepositoryCheckSync(unittest.TestCase): - """Test whether the SvnRepository svn_check_sync functionality is - correct. - - """ - - def setUp(self): - """Setup reusable svn repository object - """ - self._name = "component" - rdata = {ExternalsDescription.PROTOCOL: 'svn', - ExternalsDescription.REPO_URL: - 'https://svn-ccsm-models.cgd.ucar.edu/', - ExternalsDescription.TAG: - 'mosart/trunk_tags/mosart1_0_26', - } - - data = {self._name: - { - ExternalsDescription.REQUIRED: False, - ExternalsDescription.PATH: 'junk', - ExternalsDescription.EXTERNALS: EMPTY_STR, - ExternalsDescription.REPO: rdata, - }, - } - - model = ExternalsDescriptionDict(data) - repo = model[self._name][ExternalsDescription.REPO] - self._repo = SvnRepository('test', repo) - - @staticmethod - def _svn_info_empty(*_): - """Return an empty info string. Simulates svn info failing. - """ - return '' - - @staticmethod - def _svn_info_synced(*_): - """Return an info sting that is synced with the setUp data - """ - return SVN_INFO_MOSART - - @staticmethod - def _svn_info_modified(*_): - """Return and info string that is modified from the setUp data - """ - return SVN_INFO_CISM - - def test_repo_dir_not_exist(self): - """Test that a directory that doesn't exist returns an error status - - Note: the Repository classes should be prevented from ever - working on an empty directory by the _Source object. - - """ - stat = ExternalStatus() - self._repo._check_sync(stat, 'junk') - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_ERROR) - # check_dir should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_repo_dir_exist_no_svn_info(self): - """Test that an empty info string returns an unknown status - """ - stat = ExternalStatus() - # Now we over-ride the _svn_info method on the repo to return - # a known value without requiring access to svn. - self._repo._svn_info = self._svn_info_empty - self._repo._check_sync(stat, '.') - self.assertEqual(stat.sync_state, ExternalStatus.UNKNOWN) - # check_dir should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_repo_dir_synced(self): - """Test that a valid info string that is synced to the repo in the - externals description returns an ok status. - - """ - stat = ExternalStatus() - # Now we over-ride the _svn_info method on the repo to return - # a known value without requiring access to svn. - self._repo._svn_info = self._svn_info_synced - self._repo._check_sync(stat, '.') - self.assertEqual(stat.sync_state, ExternalStatus.STATUS_OK) - # check_dir should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - def test_repo_dir_modified(self): - """Test that a valid svn info string that is out of sync with the - externals description returns a modified status. - - """ - stat = ExternalStatus() - # Now we over-ride the _svn_info method on the repo to return - # a known value without requiring access to svn. - self._repo._svn_info = self._svn_info_modified - self._repo._check_sync(stat, '.') - self.assertEqual(stat.sync_state, ExternalStatus.MODEL_MODIFIED) - # check_dir should only modify the sync_state, not clean_state - self.assertEqual(stat.clean_state, ExternalStatus.DEFAULT) - - -class TestSVNStatusXML(unittest.TestCase): - """Test parsing of svn status xml output - """ - SVN_STATUS_XML_DIRTY_ALL = ''' - - - - - -sacks -2017-06-15T11:59:00.355419Z - - - - - - -sacks -2013-02-07T16:17:56.412878Z - - - - - - -sacks -2017-05-01T16:48:27.893741Z - - - - - - - - - - - - - - - - -''' - - SVN_STATUS_XML_DIRTY_MISSING = ''' - - - - - -sacks -2017-06-15T11:59:00.355419Z - - - - - - - - -''' - - SVN_STATUS_XML_DIRTY_MODIFIED = ''' - - - - - -sacks -2013-02-07T16:17:56.412878Z - - - - - - - - -''' - - SVN_STATUS_XML_DIRTY_DELETED = ''' - - - - - -sacks -2017-05-01T16:48:27.893741Z - - - - - - - - -''' - - SVN_STATUS_XML_DIRTY_UNVERSION = ''' - - - - - - - - - - - -''' - - SVN_STATUS_XML_DIRTY_ADDED = ''' - - - - - - - - - - - -''' - - SVN_STATUS_XML_CLEAN = ''' - - - - - - - - - - - -''' - - def test_xml_status_dirty_missing(self): - """Verify that svn status output is consindered dirty when there is a - missing file. - - """ - svn_output = self.SVN_STATUS_XML_DIRTY_MISSING - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertTrue(is_dirty) - - def test_xml_status_dirty_modified(self): - """Verify that svn status output is consindered dirty when there is a - modified file. - """ - svn_output = self.SVN_STATUS_XML_DIRTY_MODIFIED - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertTrue(is_dirty) - - def test_xml_status_dirty_deleted(self): - """Verify that svn status output is consindered dirty when there is a - deleted file. - """ - svn_output = self.SVN_STATUS_XML_DIRTY_DELETED - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertTrue(is_dirty) - - def test_xml_status_dirty_unversion(self): - """Verify that svn status output ignores unversioned files when making - the clean/dirty decision. - - """ - svn_output = self.SVN_STATUS_XML_DIRTY_UNVERSION - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertFalse(is_dirty) - - def test_xml_status_dirty_added(self): - """Verify that svn status output is consindered dirty when there is a - added file. - """ - svn_output = self.SVN_STATUS_XML_DIRTY_ADDED - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertTrue(is_dirty) - - def test_xml_status_dirty_all(self): - """Verify that svn status output is consindered dirty when there are - multiple dirty files.. - - """ - svn_output = self.SVN_STATUS_XML_DIRTY_ALL - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertTrue(is_dirty) - - def test_xml_status_dirty_clean(self): - """Verify that svn status output is consindered clean when there are - no 'dirty' files. This means accepting untracked and externals. - - """ - svn_output = self.SVN_STATUS_XML_CLEAN - is_dirty = SvnRepository.xml_status_is_dirty( - svn_output) - self.assertFalse(is_dirty) - - -if __name__ == '__main__': - unittest.main() diff --git a/manage_externals/test/test_unit_utils.py b/manage_externals/test/test_unit_utils.py deleted file mode 100644 index 80e1636649..0000000000 --- a/manage_externals/test/test_unit_utils.py +++ /dev/null @@ -1,350 +0,0 @@ -#!/usr/bin/env python3 - -"""Unit test driver for checkout_externals - -Note: this script assume the path to the checkout_externals.py module is -already in the python path. - -""" - -from __future__ import absolute_import -from __future__ import unicode_literals -from __future__ import print_function - -import os -import unittest - -from manic.utils import last_n_lines, indent_string -from manic.utils import str_to_bool, execute_subprocess -from manic.utils import is_remote_url, split_remote_url, expand_local_url - - -class TestExecuteSubprocess(unittest.TestCase): - """Test the application logic of execute_subprocess wrapper - """ - - def test_exesub_return_stat_err(self): - """Test that execute_subprocess returns a status code when caller - requests and the executed subprocess fails. - - """ - cmd = ['false'] - status = execute_subprocess(cmd, status_to_caller=True) - self.assertEqual(status, 1) - - def test_exesub_return_stat_ok(self): - """Test that execute_subprocess returns a status code when caller - requests and the executed subprocess succeeds. - - """ - cmd = ['true'] - status = execute_subprocess(cmd, status_to_caller=True) - self.assertEqual(status, 0) - - def test_exesub_except_stat_err(self): - """Test that execute_subprocess raises an exception on error when - caller doesn't request return code - - """ - cmd = ['false'] - with self.assertRaises(RuntimeError): - execute_subprocess(cmd, status_to_caller=False) - - -class TestLastNLines(unittest.TestCase): - """Test the last_n_lines function. - - """ - - def test_last_n_lines_short(self): - """With a message with <= n lines, result of last_n_lines should - just be the original message. - - """ - mystr = """three -line -string -""" - - mystr_truncated = last_n_lines( - mystr, 3, truncation_message='[truncated]') - self.assertEqual(mystr, mystr_truncated) - - def test_last_n_lines_long(self): - """With a message with > n lines, result of last_n_lines should - be a truncated string. - - """ - mystr = """a -big -five -line -string -""" - expected = """[truncated] -five -line -string -""" - - mystr_truncated = last_n_lines( - mystr, 3, truncation_message='[truncated]') - self.assertEqual(expected, mystr_truncated) - - -class TestIndentStr(unittest.TestCase): - """Test the indent_string function. - - """ - - def test_indent_string_singleline(self): - """Test the indent_string function with a single-line string - - """ - mystr = 'foo' - result = indent_string(mystr, 4) - expected = ' foo' - self.assertEqual(expected, result) - - def test_indent_string_multiline(self): - """Test the indent_string function with a multi-line string - - """ - mystr = """hello -hi -goodbye -""" - result = indent_string(mystr, 2) - expected = """ hello - hi - goodbye -""" - self.assertEqual(expected, result) - - -class TestStrToBool(unittest.TestCase): - """Test the string to boolean conversion routine. - - """ - - def test_case_insensitive_true(self): - """Verify that case insensitive variants of 'true' returns the True - boolean. - - """ - values = ['true', 'TRUE', 'True', 'tRuE', 't', 'T', ] - for value in values: - received = str_to_bool(value) - self.assertTrue(received) - - def test_case_insensitive_false(self): - """Verify that case insensitive variants of 'false' returns the False - boolean. - - """ - values = ['false', 'FALSE', 'False', 'fAlSe', 'f', 'F', ] - for value in values: - received = str_to_bool(value) - self.assertFalse(received) - - def test_invalid_str_error(self): - """Verify that a non-true/false string generates a runtime error. - """ - values = ['not_true_or_false', 'A', '1', '0', - 'false_is_not_true', 'true_is_not_false'] - for value in values: - with self.assertRaises(RuntimeError): - str_to_bool(value) - - -class TestIsRemoteURL(unittest.TestCase): - """Crude url checking to determine if a url is local or remote. - - """ - - def test_url_remote_git(self): - """verify that a remote git url is identified. - """ - url = 'git@somewhere' - is_remote = is_remote_url(url) - self.assertTrue(is_remote) - - def test_url_remote_ssh(self): - """verify that a remote ssh url is identified. - """ - url = 'ssh://user@somewhere' - is_remote = is_remote_url(url) - self.assertTrue(is_remote) - - def test_url_remote_http(self): - """verify that a remote http url is identified. - """ - url = 'http://somewhere' - is_remote = is_remote_url(url) - self.assertTrue(is_remote) - - def test_url_remote_https(self): - """verify that a remote https url is identified. - """ - url = 'https://somewhere' - is_remote = is_remote_url(url) - self.assertTrue(is_remote) - - def test_url_local_user(self): - """verify that a local path with '~/path/to/repo' gets rejected - - """ - url = '~/path/to/repo' - is_remote = is_remote_url(url) - self.assertFalse(is_remote) - - def test_url_local_var_curly(self): - """verify that a local path with env var '${HOME}' gets rejected - """ - url = '${HOME}/path/to/repo' - is_remote = is_remote_url(url) - self.assertFalse(is_remote) - - def test_url_local_var(self): - """verify that a local path with an env var '$HOME' gets rejected - """ - url = '$HOME/path/to/repo' - is_remote = is_remote_url(url) - self.assertFalse(is_remote) - - def test_url_local_abs(self): - """verify that a local abs path gets rejected - """ - url = '/path/to/repo' - is_remote = is_remote_url(url) - self.assertFalse(is_remote) - - def test_url_local_rel(self): - """verify that a local relative path gets rejected - """ - url = '../../path/to/repo' - is_remote = is_remote_url(url) - self.assertFalse(is_remote) - - -class TestSplitRemoteURL(unittest.TestCase): - """Crude url checking to determine if a url is local or remote. - - """ - - def test_url_remote_git(self): - """verify that a remote git url is identified. - """ - url = 'git@somewhere.com:org/repo' - received = split_remote_url(url) - self.assertEqual(received, "org/repo") - - def test_url_remote_ssh(self): - """verify that a remote ssh url is identified. - """ - url = 'ssh://user@somewhere.com/path/to/repo' - received = split_remote_url(url) - self.assertEqual(received, 'somewhere.com/path/to/repo') - - def test_url_remote_http(self): - """verify that a remote http url is identified. - """ - url = 'http://somewhere.org/path/to/repo' - received = split_remote_url(url) - self.assertEqual(received, 'somewhere.org/path/to/repo') - - def test_url_remote_https(self): - """verify that a remote http url is identified. - """ - url = 'http://somewhere.gov/path/to/repo' - received = split_remote_url(url) - self.assertEqual(received, 'somewhere.gov/path/to/repo') - - def test_url_local_url_unchanged(self): - """verify that a local path is unchanged - - """ - url = '/path/to/repo' - received = split_remote_url(url) - self.assertEqual(received, url) - - -class TestExpandLocalURL(unittest.TestCase): - """Crude url checking to determine if a url is local or remote. - - Remote should be unmodified. - - Local, should perform user and variable expansion. - - """ - - def test_url_local_user1(self): - """verify that a local path with '~/path/to/repo' gets expanded to an - absolute path. - - NOTE(bja, 2017-11) we can't test for something like: - '~user/path/to/repo' because the user has to be in the local - machine password directory and we don't know a user name that - is valid on every system....? - - """ - field = 'test' - url = '~/path/to/repo' - received = expand_local_url(url, field) - print(received) - self.assertTrue(os.path.isabs(received)) - - def test_url_local_expand_curly(self): - """verify that a local path with '${HOME}' gets expanded to an absolute path. - """ - field = 'test' - url = '${HOME}/path/to/repo' - received = expand_local_url(url, field) - self.assertTrue(os.path.isabs(received)) - - def test_url_local_expand_var(self): - """verify that a local path with '$HOME' gets expanded to an absolute path. - """ - field = 'test' - url = '$HOME/path/to/repo' - received = expand_local_url(url, field) - self.assertTrue(os.path.isabs(received)) - - def test_url_local_env_missing(self): - """verify that a local path with env var that is missing gets left as-is - - """ - field = 'test' - url = '$TMP_VAR/path/to/repo' - received = expand_local_url(url, field) - print(received) - self.assertEqual(received, url) - - def test_url_local_expand_env(self): - """verify that a local path with another env var gets expanded to an - absolute path. - - """ - field = 'test' - os.environ['TMP_VAR'] = '/some/absolute' - url = '$TMP_VAR/path/to/repo' - received = expand_local_url(url, field) - del os.environ['TMP_VAR'] - print(received) - self.assertTrue(os.path.isabs(received)) - self.assertEqual(received, '/some/absolute/path/to/repo') - - def test_url_local_normalize_rel(self): - """verify that a local path with another env var gets expanded to an - absolute path. - - """ - field = 'test' - url = '/this/is/a/long/../path/to/a/repo' - received = expand_local_url(url, field) - print(received) - self.assertEqual(received, '/this/is/a/path/to/a/repo') - - -if __name__ == '__main__': - unittest.main() From 0f7d429f0071995504ef41a91215724c957e2fb6 Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Mon, 27 May 2024 17:40:56 -0600 Subject: [PATCH 02/19] add submodules --- .gitignore | 11 ----------- .gitmodules | 39 +++++++++++++++++++++++++++++++++++++++ ccs_config | 1 + cime | 1 + components/cdeps | 1 + components/cism | 1 + components/cmeps | 1 + components/mizuRoute | 1 + components/mosart | 1 + components/rtm | 1 + doc/doc-builder | 1 + libraries/mct | 1 + libraries/parallelio | 1 + share | 1 + src/fates | 1 + 15 files changed, 52 insertions(+), 11 deletions(-) create mode 100644 .gitmodules create mode 160000 ccs_config create mode 160000 cime create mode 160000 components/cdeps create mode 160000 components/cism create mode 160000 components/cmeps create mode 160000 components/mizuRoute create mode 160000 components/mosart create mode 160000 components/rtm create mode 160000 doc/doc-builder create mode 160000 libraries/mct create mode 160000 libraries/parallelio create mode 160000 share create mode 160000 src/fates diff --git a/.gitignore b/.gitignore index 163bfeda2d..a083a7853f 100644 --- a/.gitignore +++ b/.gitignore @@ -1,14 +1,3 @@ -# directories checked out by manage_externals, and other files created -# by manage_externals -manage_externals.log -ccs_config -/src/fates/ -/cime/ -/components/ -/libraries/ -/share/ -/doc/doc-builder/ - # ignore svn directories **/.svn/** .svn/ diff --git a/.gitmodules b/.gitmodules new file mode 100644 index 0000000000..329ed2e748 --- /dev/null +++ b/.gitmodules @@ -0,0 +1,39 @@ +[submodule "fates"] + path = src/fates + url = https://github.com/NGEET/fates +[submodule "cism"] + path = components/cism + url = https://github.com/ESCOMP/CISM-wrapper +[submodule "mosart"] + path = components/mosart + url = https://github.com/ESCOMP/MOSART +[submodule "rtm"] + path = components/rtm + url = https://github.com/ESCOMP/RTM +[submodule "mizuRoute"] + path = components/mizuRoute + url = https://github.com/ESCOMP/mizuRoute +[submodule "ccs_config"] + path = ccs_config + url = https://github.com/ESMCI/ccs_config_cesm.git +[submodule "cime"] + path = cime + url = https://github.com/ESMCI/cime +[submodule "cmeps"] + path = components/cmeps + url = https://github.com/ESCOMP/CMEPS.git +[submodule "cdeps"] + path = components/cdeps + url = https://github.com/ESCOMP/CDEPS.git +[submodule "share"] + path = share + url = https://github.com/ESCOMP/CESM_share +[submodule "mct"] + path = libraries/mct + url = https://github.com/MCSclimate/MCT +[submodule "parallelio"] + path = libraries/parallelio + url = https://github.com/NCAR/ParallelIO +[submodule "doc-builder"] + path = doc/doc-builder + url = https://github.com/ESMCI/doc-builder diff --git a/ccs_config b/ccs_config new file mode 160000 index 0000000000..f90e10502c --- /dev/null +++ b/ccs_config @@ -0,0 +1 @@ +Subproject commit f90e10502c7246c2b45e373b7dd5e0da6cba0828 diff --git a/cime b/cime new file mode 160000 index 0000000000..422ddaa770 --- /dev/null +++ b/cime @@ -0,0 +1 @@ +Subproject commit 422ddaa770a3cea6e83a60c9700ebce77acaceed diff --git a/components/cdeps b/components/cdeps new file mode 160000 index 0000000000..7a522c828c --- /dev/null +++ b/components/cdeps @@ -0,0 +1 @@ +Subproject commit 7a522c828c32dc35777992653f281ec525509c4a diff --git a/components/cism b/components/cism new file mode 160000 index 0000000000..c05dd5c4fc --- /dev/null +++ b/components/cism @@ -0,0 +1 @@ +Subproject commit c05dd5c4fc85327e76523aaea9cfe1e388748928 diff --git a/components/cmeps b/components/cmeps new file mode 160000 index 0000000000..6384ff4e4a --- /dev/null +++ b/components/cmeps @@ -0,0 +1 @@ +Subproject commit 6384ff4e4a6bc82a678f9419a43ffbd5d53ac209 diff --git a/components/mizuRoute b/components/mizuRoute new file mode 160000 index 0000000000..0a62ee6185 --- /dev/null +++ b/components/mizuRoute @@ -0,0 +1 @@ +Subproject commit 0a62ee6185bdc9b99cd88ed5f15ea850602c43a2 diff --git a/components/mosart b/components/mosart new file mode 160000 index 0000000000..1c22a8c547 --- /dev/null +++ b/components/mosart @@ -0,0 +1 @@ +Subproject commit 1c22a8c5478b714cf5b7c54b3e5cf7bad09fd9b2 diff --git a/components/rtm b/components/rtm new file mode 160000 index 0000000000..88503adbc2 --- /dev/null +++ b/components/rtm @@ -0,0 +1 @@ +Subproject commit 88503adbc275fb2ccbb6b598e460deaeb140e515 diff --git a/doc/doc-builder b/doc/doc-builder new file mode 160000 index 0000000000..ab9bc93dd0 --- /dev/null +++ b/doc/doc-builder @@ -0,0 +1 @@ +Subproject commit ab9bc93dd09d0173f8097c7a18c7d061c1cd3b79 diff --git a/libraries/mct b/libraries/mct new file mode 160000 index 0000000000..e36024c5dd --- /dev/null +++ b/libraries/mct @@ -0,0 +1 @@ +Subproject commit e36024c5ddf482625ae6bd9474eff7d8f393f87c diff --git a/libraries/parallelio b/libraries/parallelio new file mode 160000 index 0000000000..6539ef05ae --- /dev/null +++ b/libraries/parallelio @@ -0,0 +1 @@ +Subproject commit 6539ef05ae7584ec570a56fdab9f7dfb336c2b80 diff --git a/share b/share new file mode 160000 index 0000000000..4b9dc4871a --- /dev/null +++ b/share @@ -0,0 +1 @@ +Subproject commit 4b9dc4871a259f00f35bb47708d876cb7dcdf75c diff --git a/src/fates b/src/fates new file mode 160000 index 0000000000..f0185f7c70 --- /dev/null +++ b/src/fates @@ -0,0 +1 @@ +Subproject commit f0185f7c7033fa69c80d1ddb07cbcbf1f8be1adc From aa544736634b4e095b691c2d5168dbd3c8de9cef Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Mon, 27 May 2024 17:43:00 -0600 Subject: [PATCH 03/19] update submodules --- .gitmodules | 105 ++- .../git-fleximod/.github/workflows/pre-commit | 13 + .../.github/workflows/pytest.yaml | 77 ++ .lib/git-fleximod/.pre-commit-config.yaml | 18 + .lib/git-fleximod/License | 20 + .lib/git-fleximod/README.md | 110 +++ .lib/git-fleximod/doc/Makefile | 20 + .lib/git-fleximod/doc/conf.py | 26 + .lib/git-fleximod/doc/index.rst | 24 + .lib/git-fleximod/doc/make.bat | 35 + .lib/git-fleximod/escomp_install | 25 + .lib/git-fleximod/git_fleximod/__init__.py | 0 .lib/git-fleximod/git_fleximod/cli.py | 119 +++ .../git-fleximod/git_fleximod/git_fleximod.py | 601 +++++++++++++++ .../git-fleximod/git_fleximod/gitinterface.py | 79 ++ .lib/git-fleximod/git_fleximod/gitmodules.py | 97 +++ .../git-fleximod/git_fleximod/lstripreader.py | 43 ++ .lib/git-fleximod/git_fleximod/metoflexi.py | 236 ++++++ .lib/git-fleximod/git_fleximod/utils.py | 365 +++++++++ .lib/git-fleximod/poetry.lock | 693 ++++++++++++++++++ .lib/git-fleximod/pyproject.toml | 41 ++ .lib/git-fleximod/tbump.toml | 43 ++ .lib/git-fleximod/tests/__init__.py | 3 + .lib/git-fleximod/tests/conftest.py | 138 ++++ .lib/git-fleximod/tests/test_a_import.py | 8 + .lib/git-fleximod/tests/test_b_update.py | 26 + .lib/git-fleximod/tests/test_c_required.py | 30 + .lib/git-fleximod/tests/test_d_complex.py | 67 ++ bin/git-fleximod | 8 + ccs_config | 2 +- components/cdeps | 2 +- components/mizuRoute | 2 +- components/mosart | 2 +- libraries/mct | 2 +- libraries/parallelio | 2 +- src/fates | 2 +- 36 files changed, 3050 insertions(+), 34 deletions(-) create mode 100644 .lib/git-fleximod/.github/workflows/pre-commit create mode 100644 .lib/git-fleximod/.github/workflows/pytest.yaml create mode 100644 .lib/git-fleximod/.pre-commit-config.yaml create mode 100644 .lib/git-fleximod/License create mode 100644 .lib/git-fleximod/README.md create mode 100644 .lib/git-fleximod/doc/Makefile create mode 100644 .lib/git-fleximod/doc/conf.py create mode 100644 .lib/git-fleximod/doc/index.rst create mode 100644 .lib/git-fleximod/doc/make.bat create mode 100644 .lib/git-fleximod/escomp_install create mode 100644 .lib/git-fleximod/git_fleximod/__init__.py create mode 100644 .lib/git-fleximod/git_fleximod/cli.py create mode 100755 .lib/git-fleximod/git_fleximod/git_fleximod.py create mode 100644 .lib/git-fleximod/git_fleximod/gitinterface.py create mode 100644 .lib/git-fleximod/git_fleximod/gitmodules.py create mode 100644 .lib/git-fleximod/git_fleximod/lstripreader.py create mode 100755 .lib/git-fleximod/git_fleximod/metoflexi.py create mode 100644 .lib/git-fleximod/git_fleximod/utils.py create mode 100644 .lib/git-fleximod/poetry.lock create mode 100644 .lib/git-fleximod/pyproject.toml create mode 100644 .lib/git-fleximod/tbump.toml create mode 100644 .lib/git-fleximod/tests/__init__.py create mode 100644 .lib/git-fleximod/tests/conftest.py create mode 100644 .lib/git-fleximod/tests/test_a_import.py create mode 100644 .lib/git-fleximod/tests/test_b_update.py create mode 100644 .lib/git-fleximod/tests/test_c_required.py create mode 100644 .lib/git-fleximod/tests/test_d_complex.py create mode 100755 bin/git-fleximod diff --git a/.gitmodules b/.gitmodules index 329ed2e748..699ad22969 100644 --- a/.gitmodules +++ b/.gitmodules @@ -1,39 +1,90 @@ [submodule "fates"] - path = src/fates - url = https://github.com/NGEET/fates +path = src/fates +url = https://github.com/NGEET/fates +fxtag = sci.1.73.0_api.35.0.0 +fxrequired = AlwaysRequired +fxDONOTUSEurl = https://github.com/NCAR/fates-release + [submodule "cism"] - path = components/cism - url = https://github.com/ESCOMP/CISM-wrapper -[submodule "mosart"] - path = components/mosart - url = https://github.com/ESCOMP/MOSART +path = components/cism +url = https://github.com/ESCOMP/CISM-wrapper +fxtag = cismwrap_2_2_001 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/CISM-wrapper + [submodule "rtm"] - path = components/rtm - url = https://github.com/ESCOMP/RTM +path = components/rtm +url = https://github.com/ESCOMP/RTM +fxtag = rtm1_0_79 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/RTM + +[submodule "mosart"] +path = components/mosart +url = https://github.com/ESCOMP/MOSART +fxtag = mosart1_0_49 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/MOSART + [submodule "mizuRoute"] - path = components/mizuRoute - url = https://github.com/ESCOMP/mizuRoute +path = components/mizuRoute +url = https://github.com/ESCOMP/mizuRoute +fxtag = cesm-coupling.n02_v2.1.2 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/mizuRoute + [submodule "ccs_config"] - path = ccs_config - url = https://github.com/ESMCI/ccs_config_cesm.git +path = ccs_config +url = https://github.com/ESMCI/ccs_config_cesm.git +fxtag = ccs_config_cesm0.0.106 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESMCI/ccs_config_cesm.git + [submodule "cime"] - path = cime - url = https://github.com/ESMCI/cime +path = cime +url = https://github.com/ESMCI/cime +fxtag = cime6.0.246 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESMCI/cime + [submodule "cmeps"] - path = components/cmeps - url = https://github.com/ESCOMP/CMEPS.git +path = components/cmeps +url = https://github.com/ESCOMP/CMEPS.git +fxtag = cmeps0.14.63 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/CMEPS.git + [submodule "cdeps"] - path = components/cdeps - url = https://github.com/ESCOMP/CDEPS.git +path = components/cdeps +url = https://github.com/ESCOMP/CDEPS.git +fxtag = cdeps1.0.34 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/CDEPS.git + [submodule "share"] - path = share - url = https://github.com/ESCOMP/CESM_share +path = share +url = https://github.com/ESCOMP/CESM_share +fxtag = share1.0.19 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/ESCOMP/CESM_share + [submodule "mct"] - path = libraries/mct - url = https://github.com/MCSclimate/MCT +path = libraries/mct +url = https://github.com/MCSclimate/MCT +fxtag = MCT_2.11.0 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/MCSclimate/MCT + [submodule "parallelio"] - path = libraries/parallelio - url = https://github.com/NCAR/ParallelIO +path = libraries/parallelio +url = https://github.com/NCAR/ParallelIO +fxtag = pio2_6_2 +fxrequired = ToplevelRequired +fxDONOTUSEurl = https://github.com/NCAR/ParallelIO + [submodule "doc-builder"] - path = doc/doc-builder - url = https://github.com/ESMCI/doc-builder +path = doc/doc-builder +url = https://github.com/ESMCI/doc-builder +fxtag = v1.0.8 +fxrequired = ToplevelOptional +fxDONOTUSEurl = https://github.com/ESMCI/doc-builder diff --git a/.lib/git-fleximod/.github/workflows/pre-commit b/.lib/git-fleximod/.github/workflows/pre-commit new file mode 100644 index 0000000000..1a6ad0082a --- /dev/null +++ b/.lib/git-fleximod/.github/workflows/pre-commit @@ -0,0 +1,13 @@ +name: pre-commit +on: + pull_request: + push: + branches: [main] + +jobs: + pre-commit: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - uses: actions/setup-python@v3 + - uses: pre-commit/action@v3.0.0 diff --git a/.lib/git-fleximod/.github/workflows/pytest.yaml b/.lib/git-fleximod/.github/workflows/pytest.yaml new file mode 100644 index 0000000000..0868dd9a33 --- /dev/null +++ b/.lib/git-fleximod/.github/workflows/pytest.yaml @@ -0,0 +1,77 @@ +# Run this job on pushes to `main`, and for pull requests. If you don't specify +# `branches: [main], then this actions runs _twice_ on pull requests, which is +# annoying. + +on: + push: + branches: [main] + pull_request: + branches: [main] + +jobs: + test: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + # If you wanted to use multiple Python versions, you'd have specify a matrix in the job and + # reference the matrixe python version here. + - uses: actions/setup-python@v5 + with: + python-version: '3.9' + + # Cache the installation of Poetry itself, e.g. the next step. This prevents the workflow + # from installing Poetry every time, which can be slow. Note the use of the Poetry version + # number in the cache key, and the "-0" suffix: this allows you to invalidate the cache + # manually if/when you want to upgrade Poetry, or if something goes wrong. This could be + # mildly cleaner by using an environment variable, but I don't really care. + - name: cache poetry install + uses: actions/cache@v4 + with: + path: ~/.local + key: poetry-1.7.1 + + # Install Poetry. You could do this manually, or there are several actions that do this. + # `snok/install-poetry` seems to be minimal yet complete, and really just calls out to + # Poetry's default install script, which feels correct. I pin the Poetry version here + # because Poetry does occasionally change APIs between versions and I don't want my + # actions to break if it does. + # + # The key configuration value here is `virtualenvs-in-project: true`: this creates the + # venv as a `.venv` in your testing directory, which allows the next step to easily + # cache it. + - uses: snok/install-poetry@v1 + with: + version: 1.7.1 + virtualenvs-create: true + virtualenvs-in-project: true + + # Cache your dependencies (i.e. all the stuff in your `pyproject.toml`). Note the cache + # key: if you're using multiple Python versions, or multiple OSes, you'd need to include + # them in the cache key. I'm not, so it can be simple and just depend on the poetry.lock. + - name: cache deps + id: cache-deps + uses: actions/cache@v4 + with: + path: .venv + key: pydeps-${{ hashFiles('**/poetry.lock') }} + + # Install dependencies. `--no-root` means "install all dependencies but not the project + # itself", which is what you want to avoid caching _your_ code. The `if` statement + # ensures this only runs on a cache miss. + - run: poetry install --no-interaction --no-root + if: steps.cache-deps.outputs.cache-hit != 'true' + + # Now install _your_ project. This isn't necessary for many types of projects -- particularly + # things like Django apps don't need this. But it's a good idea since it fully-exercises the + # pyproject.toml and makes that if you add things like console-scripts at some point that + # they'll be installed and working. + - run: poetry install --no-interaction + + # And finally run tests. I'm using pytest and all my pytest config is in my `pyproject.toml` + # so this line is super-simple. But it could be as complex as you need. + - run: | + git config --global user.name "${GITHUB_ACTOR}" + git config --global user.email "${GITHUB_ACTOR_ID}+${GITHUB_ACTOR}@users.noreply.github.com" + poetry run pytest + diff --git a/.lib/git-fleximod/.pre-commit-config.yaml b/.lib/git-fleximod/.pre-commit-config.yaml new file mode 100644 index 0000000000..2f6089da72 --- /dev/null +++ b/.lib/git-fleximod/.pre-commit-config.yaml @@ -0,0 +1,18 @@ +exclude: ^utils/.*$ + +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.0.1 + hooks: + - id: end-of-file-fixer + - id: trailing-whitespace + - repo: https://github.com/psf/black + rev: 22.3.0 + hooks: + - id: black + - repo: https://github.com/PyCQA/pylint + rev: v2.11.1 + hooks: + - id: pylint + args: + - --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement,logging-format-interpolation,no-name-in-module,arguments-renamed,unspecified-encoding,protected-access,import-error,no-member diff --git a/.lib/git-fleximod/License b/.lib/git-fleximod/License new file mode 100644 index 0000000000..2c6fe768c2 --- /dev/null +++ b/.lib/git-fleximod/License @@ -0,0 +1,20 @@ +Copyright 2024 National Center for Atmospheric Sciences (NCAR) + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +“Softwareâ€), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be +included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED “AS ISâ€, WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE +LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION +OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION +WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/.lib/git-fleximod/README.md b/.lib/git-fleximod/README.md new file mode 100644 index 0000000000..d1ef632f28 --- /dev/null +++ b/.lib/git-fleximod/README.md @@ -0,0 +1,110 @@ +# git-fleximod + +Flexible, Enhanced Submodule Management for Git + +## Overview + +Git-fleximod is a Python-based tool that extends Git's submodule and sparse checkout capabilities, offering additional features for managing submodules in a more flexible and efficient way. + +## Installation + +#TODO Install using pip: +# pip install git-fleximod + If you choose to locate git-fleximod in your path you can access it via command: git fleximod + +## Usage + + Basic Usage: + git fleximod [options] + Available Commands: + status: Display the status of submodules. + update: Update submodules to the tag indicated in .gitmodules variable fxtag. + test: Make sure that fxtags and submodule hashes are consistant, + make sure that official urls (as defined by fxDONOTUSEurl) are set + make sure that fxtags are defined for all submodules + Additional Options: + See git fleximod --help for more details. + +## Supported .gitmodules Variables + + fxtag: Specify a specific tag or branch to checkout for a submodule. + fxrequired: Mark a submodule's checkout behavior, with allowed values: + - ToplevelRequired: Top-level and required (checked out only when this is the Toplevel module). + - ToplevelOptional: Top-level and optional (checked out with --optional flag if this is the Toplevel module). + - AlwaysRequired: Always required (always checked out). + - AlwaysOptional: Always optional (checked out with --optional flag). + fxsparse: Enable sparse checkout for a submodule, pointing to a file containing sparse checkout paths. + fxDONOTUSEurl: This is the url used in the test subcommand to assure that protected branches do not point to forks + **NOTE** the fxDONOTUSEurl variable is only used to identify the official project repository and should not be + changed by users. Use the url variable to change to a fork if desired. + +## Sparse Checkouts + + To enable sparse checkout for a submodule, set the fxsparse variable + in the .gitmodules file to the path of a file containing the desired + sparse checkout paths. Git-fleximod will automatically configure + sparse checkout based on this file when applicable commands are run. + See [git-sparse-checkout](https://git-scm.com/docs/git-sparse-checkout#_internalsfull_pattern_set) + for details on the format of this file. + +## Tests + + The git fleximod test action is designed to be used by, for example, github workflows + to assure that protected branches are consistant with respect to submodule hashes and fleximod fxtags + +## Examples + +Here are some common usage examples: + +Update all submodules, including optional ones: +```bash + git fleximod update --optional +``` + +Updating a specific submodule to the fxtag indicated in .gitmodules: + +```bash + git fleximod update submodule-name +``` +Example .gitmodules entry: +```ini, toml + [submodule "cosp2"] + path = src/physics/cosp2/src + url = https://github.com/CFMIP/COSPv2.0 + fxsparse = ../.cosp_sparse_checkout + fxrequired = AlwaysRequired + fxtag = v2.1.4cesm +``` +Explanation: + +This entry indicates that the submodule named cosp2 at tag v2.1.4cesm +should be checked out into the directory src/physics/cosp2/src +relative to the .gitmodules directory. It should be checked out from +the URL https://github.com/CFMIP/COSPv2.0 and use sparse checkout as +described in the file ../.cosp_sparse_checkout relative to the path +directory. It should be checked out anytime this .gitmodules entry is +read. + +Additional example: +```ini, toml + [submodule "cime"] + path = cime + url = https://github.com/jedwards4b/cime + fxrequired = ToplevelRequired + fxtag = cime6.0.198_rme01 +``` + +Explanation: + +This entry indicates that the submodule cime should be checked out +into a directory named cime at tag cime6.0.198_rme01 from the URL +https://github.com/jedwards4b/cime. This should only be done if +the .gitmodules file is at the top level of the repository clone. + +## Contributing + +We welcome contributions! Please see the CONTRIBUTING.md file for guidelines. + +## License + +Git-fleximod is released under the MIT License. diff --git a/.lib/git-fleximod/doc/Makefile b/.lib/git-fleximod/doc/Makefile new file mode 100644 index 0000000000..d4bb2cbb9e --- /dev/null +++ b/.lib/git-fleximod/doc/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = . +BUILDDIR = _build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/.lib/git-fleximod/doc/conf.py b/.lib/git-fleximod/doc/conf.py new file mode 100644 index 0000000000..423099eec9 --- /dev/null +++ b/.lib/git-fleximod/doc/conf.py @@ -0,0 +1,26 @@ +# Configuration file for the Sphinx documentation builder. +# +# For the full list of built-in configuration values, see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Project information ----------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information + +project = "git-fleximod" +author = "Jim Edwards " +release = "0.4.0" + +# -- General configuration --------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration + +extensions = ["sphinx_argparse_cli"] + +templates_path = ["_templates"] +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] + + +# -- Options for HTML output ------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output + +html_theme = "alabaster" +html_static_path = ["_static"] diff --git a/.lib/git-fleximod/doc/index.rst b/.lib/git-fleximod/doc/index.rst new file mode 100644 index 0000000000..0f9c1a7f7e --- /dev/null +++ b/.lib/git-fleximod/doc/index.rst @@ -0,0 +1,24 @@ +.. git-fleximod documentation master file, created by + sphinx-quickstart on Sat Feb 3 12:02:22 2024. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +Welcome to git-fleximod's documentation! +======================================== + +.. toctree:: + :maxdepth: 2 + :caption: Contents: +.. module:: sphinxcontrib.autoprogram +.. sphinx_argparse_cli:: + :module: git_fleximod.cli + :func: get_parser + :prog: git-fleximod + + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/.lib/git-fleximod/doc/make.bat b/.lib/git-fleximod/doc/make.bat new file mode 100644 index 0000000000..32bb24529f --- /dev/null +++ b/.lib/git-fleximod/doc/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=. +set BUILDDIR=_build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/.lib/git-fleximod/escomp_install b/.lib/git-fleximod/escomp_install new file mode 100644 index 0000000000..ae782e72a4 --- /dev/null +++ b/.lib/git-fleximod/escomp_install @@ -0,0 +1,25 @@ +#!/usr/bin/env python +# updates git-fleximod in an ESCOMP model +# this script should be run from the model root directory, it expects +# git-fleximod to already be installed with the script in bin +# and the classes in lib/python/site-packages +import sys +import shutil +import os + +from glob import iglob + +fleximod_root = sys.argv[1] +fleximod_path = os.path.join(fleximod_root,"src","git-fleximod") +if os.path.isfile(fleximod_path): + with open(fleximod_path,"r") as f: + fleximod = f.readlines() + with open(os.path.join(".","bin","git-fleximod"),"w") as f: + for line in fleximod: + f.write(line) + if "import argparse" in line: + f.write('\nsys.path.append(os.path.join(os.path.dirname(__file__),"..","lib","python","site-packages"))\n\n') + + for file in iglob(os.path.join(fleximod_root, "src", "fleximod", "*.py")): + shutil.copy(file, + os.path.join("lib","python","site-packages","fleximod",os.path.basename(file))) diff --git a/.lib/git-fleximod/git_fleximod/__init__.py b/.lib/git-fleximod/git_fleximod/__init__.py new file mode 100644 index 0000000000..e69de29bb2 diff --git a/.lib/git-fleximod/git_fleximod/cli.py b/.lib/git-fleximod/git_fleximod/cli.py new file mode 100644 index 0000000000..1fb959dad0 --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/cli.py @@ -0,0 +1,119 @@ +from pathlib import Path +import argparse + +__version__ = "0.7.4" + +def find_root_dir(filename=".git"): + d = Path.cwd() + root = Path(d.root) + while d != root: + attempt = d / filename + if attempt.is_dir(): + return attempt + d = d.parent + return None + + +def get_parser(): + description = """ + %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models + """ + parser = argparse.ArgumentParser( + description=description, formatter_class=argparse.RawDescriptionHelpFormatter + ) + + # + # user options + # + choices = ["update", "status", "test"] + parser.add_argument( + "action", + choices=choices, + default="update", + help=f"Subcommand of git-fleximod, choices are {choices[:-1]}", + ) + + parser.add_argument( + "components", + nargs="*", + help="Specific component(s) to checkout. By default, " + "all required submodules are checked out.", + ) + + parser.add_argument( + "-C", + "--path", + default=find_root_dir(), + help="Toplevel repository directory. Defaults to top git directory relative to current.", + ) + + parser.add_argument( + "-g", + "--gitmodules", + nargs="?", + default=".gitmodules", + help="The submodule description filename. " "Default: %(default)s.", + ) + + parser.add_argument( + "-x", + "--exclude", + nargs="*", + help="Component(s) listed in the gitmodules file which should be ignored.", + ) + parser.add_argument( + "-f", + "--force", + action="store_true", + default=False, + help="Override cautions and update or checkout over locally modified repository.", + ) + + parser.add_argument( + "-o", + "--optional", + action="store_true", + default=False, + help="By default only the required submodules " + "are checked out. This flag will also checkout the " + "optional submodules relative to the toplevel directory.", + ) + + parser.add_argument( + "-v", + "--verbose", + action="count", + default=0, + help="Output additional information to " + "the screen and log file. This flag can be " + "used up to two times, increasing the " + "verbosity level each time.", + ) + + parser.add_argument( + "-V", + "--version", + action="version", + version=f"%(prog)s {__version__}", + help="Print version and exit.", + ) + + # + # developer options + # + parser.add_argument( + "--backtrace", + action="store_true", + help="DEVELOPER: show exception backtraces as extra " "debugging output", + ) + + parser.add_argument( + "-d", + "--debug", + action="store_true", + default=False, + help="DEVELOPER: output additional debugging " + "information to the screen and log file.", + ) + + return parser diff --git a/.lib/git-fleximod/git_fleximod/git_fleximod.py b/.lib/git-fleximod/git_fleximod/git_fleximod.py new file mode 100755 index 0000000000..103cc82a50 --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/git_fleximod.py @@ -0,0 +1,601 @@ +#!/usr/bin/env python +import sys + +MIN_PYTHON = (3, 7) +if sys.version_info < MIN_PYTHON: + sys.exit("Python %s.%s or later is required." % MIN_PYTHON) + +import os +import shutil +import logging +import textwrap +from git_fleximod import utils +from git_fleximod import cli +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules +from configparser import NoOptionError + +# logger variable is global +logger = None + + +def fxrequired_allowed_values(): + return ["ToplevelRequired", "ToplevelOptional", "AlwaysRequired", "AlwaysOptional"] + + +def commandline_arguments(args=None): + parser = cli.get_parser() + + if args: + options = parser.parse_args(args) + else: + options = parser.parse_args() + + # explicitly listing a component overrides the optional flag + if options.optional or options.components: + fxrequired = [ + "ToplevelRequired", + "ToplevelOptional", + "AlwaysRequired", + "AlwaysOptional", + ] + else: + fxrequired = ["ToplevelRequired", "AlwaysRequired"] + + action = options.action + if not action: + action = "update" + handlers = [logging.StreamHandler()] + + if options.debug: + try: + open("fleximod.log", "w") + except PermissionError: + sys.exit("ABORT: Could not write file fleximod.log") + level = logging.DEBUG + handlers.append(logging.FileHandler("fleximod.log")) + elif options.verbose: + level = logging.INFO + else: + level = logging.WARNING + # Configure the root logger + logging.basicConfig( + level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers + ) + + if hasattr(options, "version"): + exit() + + return ( + options.path, + options.gitmodules, + fxrequired, + options.components, + options.exclude, + options.force, + action, + ) + + +def submodule_sparse_checkout(root_dir, name, url, path, sparsefile, tag="master"): + """ + This function performs a sparse checkout of a git submodule. It does so by first creating the .git/info/sparse-checkout fileq + in the submodule and then checking out the desired tag. If the submodule is already checked out, it will not be checked out again. + Creating the sparse-checkout file first prevents the entire submodule from being checked out and then removed. This is important + because the submodule may have a large number of files and checking out the entire submodule and then removing it would be time + and disk space consuming. + + Parameters: + root_dir (str): The root directory for the git operation. + name (str): The name of the submodule. + url (str): The URL of the submodule. + path (str): The path to the submodule. + sparsefile (str): The sparse file for the submodule. + tag (str, optional): The tag to checkout. Defaults to "master". + + Returns: + None + """ + logger.info("Called sparse_checkout for {}".format(name)) + rgit = GitInterface(root_dir, logger) + superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") + if superroot: + gitroot = superroot.strip() + else: + gitroot = root_dir.strip() + assert os.path.isdir(os.path.join(gitroot, ".git")) + # first create the module directory + if not os.path.isdir(os.path.join(root_dir, path)): + os.makedirs(os.path.join(root_dir, path)) + + # initialize a new git repo and set the sparse checkout flag + sprep_repo = os.path.join(root_dir, path) + sprepo_git = GitInterface(sprep_repo, logger) + if os.path.exists(os.path.join(sprep_repo, ".git")): + try: + logger.info("Submodule {} found".format(name)) + chk = sprepo_git.config_get_value("core", "sparseCheckout") + if chk == "true": + logger.info("Sparse submodule {} already checked out".format(name)) + return + except NoOptionError: + logger.debug("Sparse submodule {} not present".format(name)) + except Exception as e: + utils.fatal_error("Unexpected error {} occured.".format(e)) + + sprepo_git.config_set_value("core", "sparseCheckout", "true") + + # set the repository remote + + logger.info("Setting remote origin in {}/{}".format(root_dir, path)) + status = sprepo_git.git_operation("remote", "-v") + if url not in status: + sprepo_git.git_operation("remote", "add", "origin", url) + + topgit = os.path.join(gitroot, ".git") + + if gitroot != root_dir and os.path.isfile(os.path.join(root_dir, ".git")): + with open(os.path.join(root_dir, ".git")) as f: + gitpath = os.path.relpath( + os.path.join(root_dir, f.read().split()[1]), + start=os.path.join(root_dir, path), + ) + topgit = os.path.join(gitpath, "modules") + else: + topgit = os.path.relpath( + os.path.join(root_dir, ".git", "modules"), + start=os.path.join(root_dir, path), + ) + + with utils.pushd(sprep_repo): + if not os.path.isdir(topgit): + os.makedirs(topgit) + topgit += os.sep + name + + if os.path.isdir(os.path.join(root_dir, path, ".git")): + with utils.pushd(sprep_repo): + shutil.move(".git", topgit) + with open(".git", "w") as f: + f.write("gitdir: " + os.path.relpath(topgit)) + # assert(os.path.isdir(os.path.relpath(topgit, start=sprep_repo))) + gitsparse = os.path.abspath(os.path.join(topgit, "info", "sparse-checkout")) + if os.path.isfile(gitsparse): + logger.warning( + "submodule {} is already initialized {}".format(name, topgit) + ) + return + + with utils.pushd(sprep_repo): + shutil.copy(sparsefile, gitsparse) + + # Finally checkout the repo + sprepo_git.git_operation("fetch", "origin", "--tags") + sprepo_git.git_operation("checkout", tag) + + print(f"Successfully checked out {name:>20} at {tag}") + rgit.config_set_value(f'submodule "{name}"', "active", "true") + rgit.config_set_value(f'submodule "{name}"', "url", url) + + +def single_submodule_checkout( + root, name, path, url=None, tag=None, force=False, optional=False +): + """ + This function checks out a single git submodule. + + Parameters: + root (str): The root directory for the git operation. + name (str): The name of the submodule. + path (str): The path to the submodule. + url (str, optional): The URL of the submodule. Defaults to None. + tag (str, optional): The tag to checkout. Defaults to None. + force (bool, optional): If set to True, forces the checkout operation. Defaults to False. + optional (bool, optional): If set to True, the submodule is considered optional. Defaults to False. + + Returns: + None + """ + # function implementation... + git = GitInterface(root, logger) + repodir = os.path.join(root, path) + logger.info("Checkout {} into {}/{}".format(name, root, path)) + # if url is provided update to the new url + tmpurl = None + repo_exists = False + if os.path.exists(os.path.join(repodir, ".git")): + logger.info("Submodule {} already checked out".format(name)) + repo_exists = True + # Look for a .gitmodules file in the newly checkedout repo + if not repo_exists and url: + # ssh urls cause problems for those who dont have git accounts with ssh keys defined + # but cime has one since e3sm prefers ssh to https, because the .gitmodules file was + # opened with a GitModules object we don't need to worry about restoring the file here + # it will be done by the GitModules class + if url.startswith("git@"): + tmpurl = url + url = url.replace("git@github.com:", "https://github.com/") + git.git_operation("clone", url, path) + smgit = GitInterface(repodir, logger) + if not tag: + tag = smgit.git_operation("describe", "--tags", "--always").rstrip() + smgit.git_operation("checkout", tag) + # Now need to move the .git dir to the submodule location + rootdotgit = os.path.join(root, ".git") + if os.path.isfile(rootdotgit): + with open(rootdotgit) as f: + line = f.readline() + if line.startswith("gitdir: "): + rootdotgit = line[8:].rstrip() + + newpath = os.path.abspath(os.path.join(root, rootdotgit, "modules", name)) + if os.path.exists(newpath): + shutil.rmtree(os.path.join(repodir, ".git")) + else: + shutil.move(os.path.join(repodir, ".git"), newpath) + + with open(os.path.join(repodir, ".git"), "w") as f: + f.write("gitdir: " + os.path.relpath(newpath, start=repodir)) + + if not os.path.exists(repodir): + parent = os.path.dirname(repodir) + if not os.path.isdir(parent): + os.makedirs(parent) + git.git_operation("submodule", "add", "--name", name, "--", url, path) + + if not repo_exists or not tmpurl: + git.git_operation("submodule", "update", "--init", "--", path) + + if os.path.exists(os.path.join(repodir, ".gitmodules")): + # recursively handle this checkout + print(f"Recursively checking out submodules of {name}") + gitmodules = GitModules(logger, confpath=repodir) + requiredlist = ["AlwaysRequired"] + if optional: + requiredlist.append("AlwaysOptional") + submodules_checkout(gitmodules, repodir, requiredlist, force=force) + if not os.path.exists(os.path.join(repodir, ".git")): + utils.fatal_error( + f"Failed to checkout {name} {repo_exists} {tmpurl} {repodir} {path}" + ) + + if tmpurl: + print(git.git_operation("restore", ".gitmodules")) + + return + + +def submodules_status(gitmodules, root_dir, toplevel=False): + testfails = 0 + localmods = 0 + needsupdate = 0 + for name in gitmodules.sections(): + path = gitmodules.get(name, "path") + tag = gitmodules.get(name, "fxtag") + required = gitmodules.get(name, "fxrequired") + level = required and "Toplevel" in required + if not path: + utils.fatal_error("No path found in .gitmodules for {}".format(name)) + newpath = os.path.join(root_dir, path) + logger.debug("newpath is {}".format(newpath)) + if not os.path.exists(os.path.join(newpath, ".git")): + rootgit = GitInterface(root_dir, logger) + # submodule commands use path, not name + url = gitmodules.get(name, "url") + url = url.replace("git@github.com:", "https://github.com/") + tags = rootgit.git_operation("ls-remote", "--tags", url) + atag = None + needsupdate += 1 + if not toplevel and level: + continue + for htag in tags.split("\n"): + if tag and tag in htag: + atag = (htag.split()[1])[10:] + break + if tag and tag == atag: + print(f"e {name:>20} not checked out, aligned at tag {tag}") + elif tag: + ahash = rootgit.git_operation( + "submodule", "status", "{}".format(path) + ).rstrip() + ahash = ahash[1 : len(tag) + 1] + if tag == ahash: + print(f"e {name:>20} not checked out, aligned at hash {ahash}") + else: + print( + f"e {name:>20} not checked out, out of sync at tag {atag}, expected tag is {tag}" + ) + testfails += 1 + else: + print(f"e {name:>20} has no fxtag defined in .gitmodules") + testfails += 1 + else: + with utils.pushd(newpath): + git = GitInterface(newpath, logger) + atag = git.git_operation("describe", "--tags", "--always").rstrip() + ahash = git.git_operation("status").partition("\n")[0].split()[-1] + if tag and atag == tag: + print(f" {name:>20} at tag {tag}") + elif tag and ahash[: len(tag)] == tag: + print(f" {name:>20} at hash {ahash}") + elif atag == ahash: + print(f" {name:>20} at hash {ahash}") + elif tag: + print( + f"s {name:>20} {atag} {ahash} is out of sync with .gitmodules {tag}" + ) + testfails += 1 + needsupdate += 1 + else: + print( + f"e {name:>20} has no fxtag defined in .gitmodules, module at {atag}" + ) + testfails += 1 + + status = git.git_operation("status", "--ignore-submodules") + if "nothing to commit" not in status: + localmods = localmods + 1 + print("M" + textwrap.indent(status, " ")) + + return testfails, localmods, needsupdate + + +def submodules_update(gitmodules, root_dir, requiredlist, force): + _, localmods, needsupdate = submodules_status(gitmodules, root_dir) + + if localmods and not force: + local_mods_output() + return + if needsupdate == 0: + return + + for name in gitmodules.sections(): + fxtag = gitmodules.get(name, "fxtag") + path = gitmodules.get(name, "path") + url = gitmodules.get(name, "url") + logger.info( + "name={} path={} url={} fxtag={} requiredlist={}".format( + name, os.path.join(root_dir, path), url, fxtag, requiredlist + ) + ) + # if not os.path.exists(os.path.join(root_dir,path, ".git")): + fxrequired = gitmodules.get(name, "fxrequired") + assert fxrequired in fxrequired_allowed_values() + rgit = GitInterface(root_dir, logger) + superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") + + fxsparse = gitmodules.get(name, "fxsparse") + + if ( + fxrequired + and (superroot and "Toplevel" in fxrequired) + or fxrequired not in requiredlist + ): + if "ToplevelOptional" == fxrequired: + print("Skipping optional component {}".format(name)) + continue + if fxsparse: + logger.debug( + "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( + root_dir, name, url, path, fxsparse, fxtag + ) + ) + submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) + else: + logger.info( + "Calling submodule_checkout({},{},{},{})".format( + root_dir, name, path, url + ) + ) + + single_submodule_checkout( + root_dir, + name, + path, + url=url, + tag=fxtag, + force=force, + optional=("AlwaysOptional" in requiredlist), + ) + + if os.path.exists(os.path.join(path, ".git")): + submoddir = os.path.join(root_dir, path) + with utils.pushd(submoddir): + git = GitInterface(submoddir, logger) + # first make sure the url is correct + upstream = git.git_operation("ls-remote", "--get-url").rstrip() + newremote = "origin" + if upstream != url: + # TODO - this needs to be a unique name + remotes = git.git_operation("remote", "-v") + if url in remotes: + for line in remotes: + if url in line and "fetch" in line: + newremote = line.split()[0] + break + else: + i = 0 + while newremote in remotes: + i = i + 1 + newremote = f"newremote.{i:02d}" + git.git_operation("remote", "add", newremote, url) + + tags = git.git_operation("tag", "-l") + if fxtag and fxtag not in tags: + git.git_operation("fetch", newremote, "--tags") + atag = git.git_operation("describe", "--tags", "--always").rstrip() + if fxtag and fxtag != atag: + try: + git.git_operation("checkout", fxtag) + print(f"{name:>20} updated to {fxtag}") + except Exception as error: + print(error) + elif not fxtag: + print(f"No fxtag found for submodule {name:>20}") + else: + print(f"{name:>20} up to date.") + + +def local_mods_output(): + text = """\ + The submodules labeled with 'M' above are not in a clean state. + The following are options for how to proceed: + (1) Go into each submodule which is not in a clean state and issue a 'git status' + Either revert or commit your changes so that the submodule is in a clean state. + (2) use the --force option to git-fleximod + (3) you can name the particular submodules to update using the git-fleximod command line + (4) As a last resort you can remove the submodule (via 'rm -fr [directory]') + then rerun git-fleximod update. +""" + print(text) + + +# checkout is done by update if required so this function may be depricated +def submodules_checkout(gitmodules, root_dir, requiredlist, force=False): + """ + This function checks out all git submodules based on the provided parameters. + + Parameters: + gitmodules (ConfigParser): The gitmodules configuration. + root_dir (str): The root directory for the git operation. + requiredlist (list): The list of required modules. + force (bool, optional): If set to True, forces the checkout operation. Defaults to False. + + Returns: + None + """ + # function implementation... + print("") + _, localmods, needsupdate = submodules_status(gitmodules, root_dir) + if localmods and not force: + local_mods_output() + return + if not needsupdate: + return + for name in gitmodules.sections(): + fxrequired = gitmodules.get(name, "fxrequired") + fxsparse = gitmodules.get(name, "fxsparse") + fxtag = gitmodules.get(name, "fxtag") + path = gitmodules.get(name, "path") + url = gitmodules.get(name, "url") + if fxrequired and fxrequired not in requiredlist: + if "Optional" in fxrequired: + print("Skipping optional component {}".format(name)) + continue + + if fxsparse: + logger.debug( + "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( + root_dir, name, url, path, fxsparse, fxtag + ) + ) + submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) + else: + logger.debug( + "Calling submodule_checkout({},{},{})".format(root_dir, name, path) + ) + single_submodule_checkout( + root_dir, + name, + path, + url=url, + tag=fxtag, + force=force, + optional="AlwaysOptional" in requiredlist, + ) + + +def submodules_test(gitmodules, root_dir): + """ + This function tests the git submodules based on the provided parameters. + + It first checks that fxtags are present and in sync with submodule hashes. + Then it ensures that urls are consistent with fxurls (not forks and not ssh) + and that sparse checkout files exist. + + Parameters: + gitmodules (ConfigParser): The gitmodules configuration. + root_dir (str): The root directory for the git operation. + + Returns: + int: The number of test failures. + """ + # First check that fxtags are present and in sync with submodule hashes + testfails, localmods, needsupdate = submodules_status(gitmodules, root_dir) + print("") + # Then make sure that urls are consistant with fxurls (not forks and not ssh) + # and that sparse checkout files exist + for name in gitmodules.sections(): + url = gitmodules.get(name, "url") + fxurl = gitmodules.get(name, "fxDONOTMODIFYurl") + fxsparse = gitmodules.get(name, "fxsparse") + path = gitmodules.get(name, "path") + fxurl = fxurl[:-4] if fxurl.endswith(".git") else fxurl + url = url[:-4] if url.endswith(".git") else url + if not fxurl or url.lower() != fxurl.lower(): + print(f"{name:>20} url {url} not in sync with required {fxurl}") + testfails += 1 + if fxsparse and not os.path.isfile(os.path.join(root_dir, path, fxsparse)): + print(f"{name:>20} sparse checkout file {fxsparse} not found") + testfails += 1 + return testfails + localmods + needsupdate + + +def main(): + ( + root_dir, + file_name, + fxrequired, + includelist, + excludelist, + force, + action, + ) = commandline_arguments() + # Get a logger for the package + global logger + logger = logging.getLogger(__name__) + + logger.info("action is {}".format(action)) + + if not os.path.isfile(os.path.join(root_dir, file_name)): + file_path = utils.find_upwards(root_dir, file_name) + + if file_path is None: + utils.fatal_error( + "No {} found in {} or any of it's parents".format(file_name, root_dir) + ) + + root_dir = os.path.dirname(file_path) + logger.info( + "root_dir is {} includelist={} excludelist={}".format( + root_dir, includelist, excludelist + ) + ) + gitmodules = GitModules( + logger, + confpath=root_dir, + conffile=file_name, + includelist=includelist, + excludelist=excludelist, + ) + if not gitmodules.sections(): + sys.exit("No submodule components found") + retval = 0 + if action == "update": + submodules_update(gitmodules, root_dir, fxrequired, force) + elif action == "status": + tfails, lmods, updates = submodules_status(gitmodules, root_dir, toplevel=True) + if tfails + lmods + updates > 0: + print( + f" testfails = {tfails}, local mods = {lmods}, needs updates {updates}\n" + ) + if lmods > 0: + local_mods_output() + elif action == "test": + retval = submodules_test(gitmodules, root_dir) + else: + utils.fatal_error(f"unrecognized action request {action}") + return retval + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/.lib/git-fleximod/git_fleximod/gitinterface.py b/.lib/git-fleximod/git_fleximod/gitinterface.py new file mode 100644 index 0000000000..93ae38ecde --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/gitinterface.py @@ -0,0 +1,79 @@ +import os +import sys +from . import utils +from pathlib import Path + +class GitInterface: + def __init__(self, repo_path, logger): + logger.debug("Initialize GitInterface for {}".format(repo_path)) + if isinstance(repo_path, str): + self.repo_path = Path(repo_path).resolve() + elif isinstance(repo_path, Path): + self.repo_path = repo_path.resolve() + else: + raise TypeError("repo_path must be a str or Path object") + self.logger = logger + try: + import git + + self._use_module = True + try: + self.repo = git.Repo(str(self.repo_path)) # Initialize GitPython repo + except git.exc.InvalidGitRepositoryError: + self.git = git + self._init_git_repo() + msg = "Using GitPython interface to git" + except ImportError: + self._use_module = False + if not (self.repo_path / ".git").exists(): + self._init_git_repo() + msg = "Using shell interface to git" + self.logger.info(msg) + + def _git_command(self, operation, *args): + self.logger.info(operation) + if self._use_module and operation != "submodule": + try: + return getattr(self.repo.git, operation)(*args) + except Exception as e: + sys.exit(e) + else: + return ["git", "-C", str(self.repo_path), operation] + list(args) + + def _init_git_repo(self): + if self._use_module: + self.repo = self.git.Repo.init(str(self.repo_path)) + else: + command = ("git", "-C", str(self.repo_path), "init") + utils.execute_subprocess(command) + + # pylint: disable=unused-argument + def git_operation(self, operation, *args, **kwargs): + command = self._git_command(operation, *args) + self.logger.info(command) + if isinstance(command, list): + try: + return utils.execute_subprocess(command, output_to_caller=True) + except Exception as e: + sys.exit(e) + else: + return command + + def config_get_value(self, section, name): + if self._use_module: + config = self.repo.config_reader() + return config.get_value(section, name) + else: + cmd = ("git", "-C", str(self.repo_path), "config", "--get", f"{section}.{name}") + output = utils.execute_subprocess(cmd, output_to_caller=True) + return output.strip() + + def config_set_value(self, section, name, value): + if self._use_module: + with self.repo.config_writer() as writer: + writer.set_value(section, name, value) + writer.release() # Ensure changes are saved + else: + cmd = ("git", "-C", str(self.repo_path), "config", f"{section}.{name}", value) + self.logger.info(cmd) + utils.execute_subprocess(cmd, output_to_caller=True) diff --git a/.lib/git-fleximod/git_fleximod/gitmodules.py b/.lib/git-fleximod/git_fleximod/gitmodules.py new file mode 100644 index 0000000000..68c82d066f --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/gitmodules.py @@ -0,0 +1,97 @@ +import shutil +from pathlib import Path +from configparser import RawConfigParser, ConfigParser +from .lstripreader import LstripReader + + +class GitModules(RawConfigParser): + def __init__( + self, + logger, + confpath=Path.cwd(), + conffile=".gitmodules", + includelist=None, + excludelist=None, + ): + """ + confpath: Path to the directory containing the .gitmodules file (defaults to the current working directory). + conffile: Name of the configuration file (defaults to .gitmodules). + includelist: Optional list of submodules to include. + excludelist: Optional list of submodules to exclude. + """ + self.logger = logger + self.logger.debug( + "Creating a GitModules object {} {} {} {}".format( + confpath, conffile, includelist, excludelist + ) + ) + super().__init__() + self.conf_file = (Path(confpath) / Path(conffile)) + if self.conf_file.exists(): + self.read_file(LstripReader(str(self.conf_file)), source=conffile) + self.includelist = includelist + self.excludelist = excludelist + self.isdirty = False + + def reload(self): + self.clear() + if self.conf_file.exists(): + self.read_file(LstripReader(str(self.conf_file)), source=self.conf_file) + + + def set(self, name, option, value): + """ + Sets a configuration value for a specific submodule: + Ensures the appropriate section exists for the submodule. + Calls the parent class's set method to store the value. + """ + self.isdirty = True + self.logger.debug("set called {} {} {}".format(name, option, value)) + section = f'submodule "{name}"' + if not self.has_section(section): + self.add_section(section) + super().set(section, option, str(value)) + + # pylint: disable=redefined-builtin, arguments-differ + def get(self, name, option, raw=False, vars=None, fallback=None): + """ + Retrieves a configuration value for a specific submodule: + Uses the parent class's get method to access the value. + Handles potential errors if the section or option doesn't exist. + """ + self.logger.debug("get called {} {}".format(name, option)) + section = f'submodule "{name}"' + try: + return ConfigParser.get( + self, section, option, raw=raw, vars=vars, fallback=fallback + ) + except ConfigParser.NoOptionError: + return None + + def save(self): + if self.isdirty: + self.logger.info("Writing {}".format(self.conf_file)) + with open(self.conf_file, "w") as fd: + self.write(fd) + self.isdirty = False + + def __del__(self): + self.save() + + def sections(self): + """Strip the submodule part out of section and just use the name""" + self.logger.debug("calling GitModules sections iterator") + names = [] + for section in ConfigParser.sections(self): + name = section[11:-1] + if self.includelist and name not in self.includelist: + continue + if self.excludelist and name in self.excludelist: + continue + names.append(name) + return names + + def items(self, name, raw=False, vars=None): + self.logger.debug("calling GitModules items for {}".format(name)) + section = f'submodule "{name}"' + return ConfigParser.items(section, raw=raw, vars=vars) diff --git a/.lib/git-fleximod/git_fleximod/lstripreader.py b/.lib/git-fleximod/git_fleximod/lstripreader.py new file mode 100644 index 0000000000..01d5580ee8 --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/lstripreader.py @@ -0,0 +1,43 @@ +class LstripReader(object): + "LstripReader formats .gitmodules files to be acceptable for configparser" + + def __init__(self, filename): + with open(filename, "r") as infile: + lines = infile.readlines() + self._lines = list() + self._num_lines = len(lines) + self._index = 0 + for line in lines: + self._lines.append(line.lstrip()) + + def readlines(self): + """Return all the lines from this object's file""" + return self._lines + + def readline(self, size=-1): + """Format and return the next line or raise StopIteration""" + try: + line = self.next() + except StopIteration: + line = "" + + if (size > 0) and (len(line) < size): + return line[0:size] + + return line + + def __iter__(self): + """Begin an iteration""" + self._index = 0 + return self + + def next(self): + """Return the next line or raise StopIteration""" + if self._index >= self._num_lines: + raise StopIteration + + self._index = self._index + 1 + return self._lines[self._index - 1] + + def __next__(self): + return self.next() diff --git a/.lib/git-fleximod/git_fleximod/metoflexi.py b/.lib/git-fleximod/git_fleximod/metoflexi.py new file mode 100755 index 0000000000..cc347db2dd --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/metoflexi.py @@ -0,0 +1,236 @@ +#!/usr/bin/env python +from configparser import ConfigParser +import sys +import shutil +from pathlib import Path +import argparse +import logging +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules +from git_fleximod import utils + +logger = None + +def find_root_dir(filename=".git"): + d = Path.cwd() + root = Path(d.root) + while d != root: + attempt = d / filename + if attempt.is_dir(): + return d + d = d.parent + return None + + +def get_parser(): + description = """ + %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models + """ + parser = argparse.ArgumentParser( + description=description, formatter_class=argparse.RawDescriptionHelpFormatter + ) + + parser.add_argument('-e', '--externals', nargs='?', + default='Externals.cfg', + help='The externals description filename. ' + 'Default: %(default)s.') + + parser.add_argument( + "-C", + "--path", + default=find_root_dir(), + help="Toplevel repository directory. Defaults to top git directory relative to current.", + ) + + parser.add_argument( + "-g", + "--gitmodules", + nargs="?", + default=".gitmodules", + help="The submodule description filename. " "Default: %(default)s.", + ) + parser.add_argument( + "-v", + "--verbose", + action="count", + default=0, + help="Output additional information to " + "the screen and log file. This flag can be " + "used up to two times, increasing the " + "verbosity level each time.", + ) + parser.add_argument( + "-d", + "--debug", + action="store_true", + default=False, + help="DEVELOPER: output additional debugging " + "information to the screen and log file.", + ) + + return parser + +def commandline_arguments(args=None): + parser = get_parser() + + options = parser.parse_args(args) + handlers = [logging.StreamHandler()] + + if options.debug: + try: + open("fleximod.log", "w") + except PermissionError: + sys.exit("ABORT: Could not write file fleximod.log") + level = logging.DEBUG + handlers.append(logging.FileHandler("fleximod.log")) + elif options.verbose: + level = logging.INFO + else: + level = logging.WARNING + # Configure the root logger + logging.basicConfig( + level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers + ) + + return( + options.path, + options.gitmodules, + options.externals + ) + +class ExternalRepoTranslator: + """ + Translates external repositories configured in an INI-style externals file. + """ + + def __init__(self, rootpath, gitmodules, externals): + self.rootpath = rootpath + if gitmodules: + self.gitmodules = GitModules(logger, confpath=rootpath) + self.externals = (rootpath / Path(externals)).resolve() + print(f"Translating {self.externals}") + self.git = GitInterface(rootpath, logger) + +# def __del__(self): +# if (self.rootpath / "save.gitignore"): + + + def translate_single_repo(self, section, tag, url, path, efile, hash_, sparse, protocol): + """ + Translates a single repository based on configuration details. + + Args: + rootpath (str): Root path of the main repository. + gitmodules (str): Path to the .gitmodules file. + tag (str): The tag to use for the external repository. + url (str): The URL of the external repository. + path (str): The relative path within the main repository for the external repository. + efile (str): The external file or file containing submodules. + hash_ (str): The commit hash to checkout (if applicable). + sparse (str): Boolean indicating whether to use sparse checkout (if applicable). + protocol (str): The protocol to use (e.g., 'git', 'http'). + """ + assert protocol != "svn", "SVN protocol is not currently supported" + print(f"Translating repository {section}") + if efile: + file_path = Path(path) / Path(efile) + newroot = (self.rootpath / file_path).parent.resolve() + if not newroot.exists(): + newroot.mkdir(parents=True) + logger.info("Newroot is {}".format(newroot)) + newt = ExternalRepoTranslator(newroot, ".gitmodules", efile) + newt.translate_repo() + if protocol == "externals_only": + if tag: + self.gitmodules.set(section, "fxtag", tag) + if hash_: + self.gitmodules.set(section, "fxtag", hash_) + + self.gitmodules.set(section, "fxDONOTUSEurl", url) + if sparse: + self.gitmodules.set(section, "fxsparse", sparse) + self.gitmodules.set(section, "fxrequired", "ToplevelRequired") + else: + newpath = (self.rootpath / Path(path)) + if newpath.exists(): + shutil.rmtree(newpath) + logger.info("Creating directory {}".format(newpath)) + newpath.mkdir(parents=True) + if tag: + logger.info("cloning {}".format(section)) + try: + self.git.git_operation("clone", "-b", tag, "--depth", "1", url, path) + except: + self.git.git_operation("clone", url, path) + with utils.pushd(newpath): + ngit = GitInterface(newpath, logger) + ngit.git_operation("checkout", tag) + if hash_: + self.git.git_operation("clone", url, path) + git = GitInterface(newpath, logger) + git.git_operation("fetch", "origin") + git.git_operation("checkout", hash_) + if sparse: + print("setting as sparse submodule {}".format(section)) + sparsefile = (newpath / Path(sparse)) + newfile = (newpath / ".git" / "info" / "sparse-checkout") + print(f"sparsefile {sparsefile} newfile {newfile}") + shutil.copy(sparsefile, newfile) + + logger.info("adding submodule {}".format(section)) + self.gitmodules.save() + self.git.git_operation("submodule", "add", "-f", "--name", section, url, path) + self.git.git_operation("submodule","absorbgitdirs") + self.gitmodules.reload() + if tag: + self.gitmodules.set(section, "fxtag", tag) + if hash_: + self.gitmodules.set(section, "fxtag", hash_) + + self.gitmodules.set(section, "fxDONOTUSEurl", url) + if sparse: + self.gitmodules.set(section, "fxsparse", sparse) + self.gitmodules.set(section, "fxrequired", "ToplevelRequired") + + + def translate_repo(self): + """ + Translates external repositories defined within an external file. + + Args: + rootpath (str): Root path of the main repository. + gitmodules (str): Path to the .gitmodules file. + external_file (str): The path to the external file containing repository definitions. + """ + econfig = ConfigParser() + econfig.read((self.rootpath / Path(self.externals))) + + for section in econfig.sections(): + if section == "externals_description": + logger.info("skipping section {}".format(section)) + return + logger.info("Translating section {}".format(section)) + tag = econfig.get(section, "tag", raw=False, fallback=None) + url = econfig.get(section, "repo_url", raw=False, fallback=None) + path = econfig.get(section, "local_path", raw=False, fallback=None) + efile = econfig.get(section, "externals", raw=False, fallback=None) + hash_ = econfig.get(section, "hash", raw=False, fallback=None) + sparse = econfig.get(section, "sparse", raw=False, fallback=None) + protocol = econfig.get(section, "protocol", raw=False, fallback=None) + + self.translate_single_repo(section, tag, url, path, efile, hash_, sparse, protocol) + + + +def _main(): + rootpath, gitmodules, externals = commandline_arguments() + global logger + logger = logging.getLogger(__name__) + with utils.pushd(rootpath): + t = ExternalRepoTranslator(Path(rootpath), gitmodules, externals) + logger.info("Translating {}".format(rootpath)) + t.translate_repo() + + +if __name__ == "__main__": + sys.exit(_main()) diff --git a/.lib/git-fleximod/git_fleximod/utils.py b/.lib/git-fleximod/git_fleximod/utils.py new file mode 100644 index 0000000000..7cc1de38cc --- /dev/null +++ b/.lib/git-fleximod/git_fleximod/utils.py @@ -0,0 +1,365 @@ +#!/usr/bin/env python3 +""" +Common public utilities for manic package + +""" + +import logging +import os +import subprocess +import sys +from threading import Timer +from pathlib import Path + +LOCAL_PATH_INDICATOR = "." +# --------------------------------------------------------------------- +# +# functions to massage text for output and other useful utilities +# +# --------------------------------------------------------------------- +from contextlib import contextmanager + + +@contextmanager +def pushd(new_dir): + """context for chdir. usage: with pushd(new_dir)""" + previous_dir = os.getcwd() + os.chdir(new_dir) + try: + yield + finally: + os.chdir(previous_dir) + + +def log_process_output(output): + """Log each line of process output at debug level so it can be + filtered if necessary. By default, output is a single string, and + logging.debug(output) will only put log info heading on the first + line. This makes it hard to filter with grep. + + """ + output = output.split("\n") + for line in output: + logging.debug(line) + + +def printlog(msg, **kwargs): + """Wrapper script around print to ensure that everything printed to + the screen also gets logged. + + """ + logging.info(msg) + if kwargs: + print(msg, **kwargs) + else: + print(msg) + sys.stdout.flush() + + +def find_upwards(root_dir, filename): + """Find a file in root dir or any of it's parents""" + d = Path(root_dir) + root = Path(d.root) + while d != root: + attempt = d / filename + if attempt.exists(): + return attempt + d = d.parent + return None + + +def last_n_lines(the_string, n_lines, truncation_message=None): + """Returns the last n lines of the given string + + Args: + the_string: str + n_lines: int + truncation_message: str, optional + + Returns a string containing the last n lines of the_string + + If truncation_message is provided, the returned string begins with + the given message if and only if the string is greater than n lines + to begin with. + """ + + lines = the_string.splitlines(True) + if len(lines) <= n_lines: + return_val = the_string + else: + lines_subset = lines[-n_lines:] + str_truncated = "".join(lines_subset) + if truncation_message: + str_truncated = truncation_message + "\n" + str_truncated + return_val = str_truncated + + return return_val + + +def indent_string(the_string, indent_level): + """Indents the given string by a given number of spaces + + Args: + the_string: str + indent_level: int + + Returns a new string that is the same as the_string, except that + each line is indented by 'indent_level' spaces. + + In python3, this can be done with textwrap.indent. + """ + + lines = the_string.splitlines(True) + padding = " " * indent_level + lines_indented = [padding + line for line in lines] + return "".join(lines_indented) + + +# --------------------------------------------------------------------- +# +# error handling +# +# --------------------------------------------------------------------- + + +def fatal_error(message): + """ + Error output function + """ + logging.error(message) + raise RuntimeError("{0}ERROR: {1}".format(os.linesep, message)) + + +# --------------------------------------------------------------------- +# +# Data conversion / manipulation +# +# --------------------------------------------------------------------- +def str_to_bool(bool_str): + """Convert a sting representation of as boolean into a true boolean. + + Conversion should be case insensitive. + """ + value = None + str_lower = bool_str.lower() + if str_lower in ("true", "t"): + value = True + elif str_lower in ("false", "f"): + value = False + if value is None: + msg = ( + 'ERROR: invalid boolean string value "{0}". ' + 'Must be "true" or "false"'.format(bool_str) + ) + fatal_error(msg) + return value + + +REMOTE_PREFIXES = ["http://", "https://", "ssh://", "git@"] + + +def is_remote_url(url): + """check if the user provided a local file path instead of a + remote. If so, it must be expanded to an absolute + path. + + """ + remote_url = False + for prefix in REMOTE_PREFIXES: + if url.startswith(prefix): + remote_url = True + return remote_url + + +def split_remote_url(url): + """check if the user provided a local file path or a + remote. If remote, try to strip off protocol info. + + """ + remote_url = is_remote_url(url) + if not remote_url: + return url + + for prefix in REMOTE_PREFIXES: + url = url.replace(prefix, "") + + if "@" in url: + url = url.split("@")[1] + + if ":" in url: + url = url.split(":")[1] + + return url + + +def expand_local_url(url, field): + """check if the user provided a local file path instead of a + remote. If so, it must be expanded to an absolute + path. + + Note: local paths of LOCAL_PATH_INDICATOR have special meaning and + represent local copy only, don't work with the remotes. + + """ + remote_url = is_remote_url(url) + if not remote_url: + if url.strip() == LOCAL_PATH_INDICATOR: + pass + else: + url = os.path.expandvars(url) + url = os.path.expanduser(url) + if not os.path.isabs(url): + msg = ( + 'WARNING: Externals description for "{0}" contains a ' + "url that is not remote and does not expand to an " + "absolute path. Version control operations may " + "fail.\n\nurl={1}".format(field, url) + ) + printlog(msg) + else: + url = os.path.normpath(url) + return url + + +# --------------------------------------------------------------------- +# +# subprocess +# +# --------------------------------------------------------------------- + +# Give the user a helpful message if we detect that a command seems to +# be hanging. +_HANGING_SEC = 300 + + +def _hanging_msg(working_directory, command): + print( + """ + +Command '{command}' +from directory {working_directory} +has taken {hanging_sec} seconds. It may be hanging. + +The command will continue to run, but you may want to abort +manage_externals with ^C and investigate. A possible cause of hangs is +when svn or git require authentication to access a private +repository. On some systems, svn and git requests for authentication +information will not be displayed to the user. In this case, the program +will appear to hang. Ensure you can run svn and git manually and access +all repositories without entering your authentication information. + +""".format( + command=command, + working_directory=working_directory, + hanging_sec=_HANGING_SEC, + ) + ) + + +def execute_subprocess(commands, status_to_caller=False, output_to_caller=False): + """Wrapper around subprocess.check_output to handle common + exceptions. + + check_output runs a command with arguments and waits + for it to complete. + + check_output raises an exception on a nonzero return code. if + status_to_caller is true, execute_subprocess returns the subprocess + return code, otherwise execute_subprocess treats non-zero return + status as an error and raises an exception. + + """ + cwd = os.getcwd() + msg = "In directory: {0}\nexecute_subprocess running command:".format(cwd) + logging.info(msg) + commands_str = " ".join(str(element) for element in commands) + logging.info(commands_str) + return_to_caller = status_to_caller or output_to_caller + status = -1 + output = "" + hanging_timer = Timer( + _HANGING_SEC, + _hanging_msg, + kwargs={"working_directory": cwd, "command": commands_str}, + ) + hanging_timer.start() + try: + output = subprocess.check_output( + commands, stderr=subprocess.STDOUT, universal_newlines=True + ) + log_process_output(output) + status = 0 + except OSError as error: + msg = failed_command_msg( + "Command execution failed. Does the executable exist?", commands + ) + logging.error(error) + fatal_error(msg) + except ValueError as error: + msg = failed_command_msg( + "DEV_ERROR: Invalid arguments trying to run subprocess", commands + ) + logging.error(error) + fatal_error(msg) + except subprocess.CalledProcessError as error: + # Only report the error if we are NOT returning to the + # caller. If we are returning to the caller, then it may be a + # simple status check. If returning, it is the callers + # responsibility determine if an error occurred and handle it + # appropriately. + if not return_to_caller: + msg_context = ( + "Process did not run successfully; " + "returned status {0}".format(error.returncode) + ) + msg = failed_command_msg(msg_context, commands, output=error.output) + logging.error(error) + logging.error(msg) + log_process_output(error.output) + fatal_error(msg) + status = error.returncode + finally: + hanging_timer.cancel() + + if status_to_caller and output_to_caller: + ret_value = (status, output) + elif status_to_caller: + ret_value = status + elif output_to_caller: + ret_value = output + else: + ret_value = None + + return ret_value + + +def failed_command_msg(msg_context, command, output=None): + """Template for consistent error messages from subprocess calls. + + If 'output' is given, it should provide the output from the failed + command + """ + + if output: + output_truncated = last_n_lines( + output, 20, truncation_message="[... Output truncated for brevity ...]" + ) + errmsg = ( + "Failed with output:\n" + indent_string(output_truncated, 4) + "\nERROR: " + ) + else: + errmsg = "" + + command_str = " ".join(command) + errmsg += """In directory + {cwd} +{context}: + {command} +""".format( + cwd=os.getcwd(), context=msg_context, command=command_str + ) + + if output: + errmsg += "See above for output from failed command.\n" + + return errmsg diff --git a/.lib/git-fleximod/poetry.lock b/.lib/git-fleximod/poetry.lock new file mode 100644 index 0000000000..b59ed3942c --- /dev/null +++ b/.lib/git-fleximod/poetry.lock @@ -0,0 +1,693 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" +optional = false +python-versions = ">=3.6" +files = [ + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, +] + +[[package]] +name = "babel" +version = "2.14.0" +description = "Internationalization utilities" +optional = false +python-versions = ">=3.7" +files = [ + {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"}, + {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"}, +] + +[package.dependencies] +pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} + +[package.extras] +dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] + +[[package]] +name = "certifi" +version = "2024.2.2" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, + {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.3.2" +description = "The Real First Universal Charset Detector. 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"sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, +] + +[package.extras] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] +testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] + +[metadata] +lock-version = "2.0" +python-versions = "^3.8" +content-hash = "25ee2ae1d74abedde3a6637a60d4a3095ea5cf9731960875741bbc2ba84a475d" diff --git a/.lib/git-fleximod/pyproject.toml b/.lib/git-fleximod/pyproject.toml new file mode 100644 index 0000000000..2484552e4f --- /dev/null +++ b/.lib/git-fleximod/pyproject.toml @@ -0,0 +1,41 @@ +[tool.poetry] +name = "git-fleximod" +version = "0.7.4" +description = "Extended support for git-submodule and git-sparse-checkout" +authors = ["Jim Edwards "] +maintainers = ["Jim Edwards "] +license = "MIT" +readme = "README.md" +homepage = "https://github.com/jedwards4b/git-fleximod" +keywords = ["git", "submodule", "sparse-checkout"] +packages = [ +{ include = "git_fleximod"}, +{ include = "doc"}, +] + +[tool.poetry.scripts] +git-fleximod = "git_fleximod.git_fleximod:main" +me2flexi = "git_fleximod.metoflexi:_main" +fsspec = "fsspec.fuse:main" + +[tool.poetry.dependencies] +python = "^3.8" +GitPython = "^3.1.0" +sphinx = "^5.0.0" +fsspec = "^2023.12.2" +wheel = "^0.42.0" +pytest = "^8.0.0" +pyfakefs = "^5.3.5" + +[tool.poetry.urls] +"Bug Tracker" = "https://github.com/jedwards4b/git-fleximod/issues" + +[tool.pytest.ini_options] +markers = [ + "skip_after_first: only run on first iteration" +] + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + diff --git a/.lib/git-fleximod/tbump.toml b/.lib/git-fleximod/tbump.toml new file mode 100644 index 0000000000..d4b8eaee11 --- /dev/null +++ b/.lib/git-fleximod/tbump.toml @@ -0,0 +1,43 @@ +# Uncomment this if your project is hosted on GitHub: +github_url = "https://github.com/jedwards4b/git-fleximod/" + +[version] +current = "0.7.4" + +# Example of a semver regexp. +# Make sure this matches current_version before +# using tbump +regex = ''' + (?P\d+) + \. + (?P\d+) + \. + (?P\d+) + ''' + +[git] +message_template = "Bump to {new_version}" +tag_template = "v{new_version}" + +# For each file to patch, add a [[file]] config +# section containing the path of the file, relative to the +# tbump.toml location. +[[file]] +src = "git_fleximod/cli.py" + +[[file]] +src = "pyproject.toml" + +# You can specify a list of commands to +# run after the files have been patched +# and before the git commit is made + +# [[before_commit]] +# name = "check changelog" +# cmd = "grep -q {new_version} Changelog.rst" + +# Or run some commands after the git tag and the branch +# have been pushed: +# [[after_push]] +# name = "publish" +# cmd = "./publish.sh" diff --git a/.lib/git-fleximod/tests/__init__.py b/.lib/git-fleximod/tests/__init__.py new file mode 100644 index 0000000000..4d4c66c78e --- /dev/null +++ b/.lib/git-fleximod/tests/__init__.py @@ -0,0 +1,3 @@ +import sys, os + +sys.path.append(os.path.join(os.path.dirname(__file__), os.path.pardir, "src")) diff --git a/.lib/git-fleximod/tests/conftest.py b/.lib/git-fleximod/tests/conftest.py new file mode 100644 index 0000000000..942a0efb97 --- /dev/null +++ b/.lib/git-fleximod/tests/conftest.py @@ -0,0 +1,138 @@ +import pytest +from git_fleximod.gitinterface import GitInterface +import os +import subprocess +import logging +from pathlib import Path + +@pytest.fixture(scope='session') +def logger(): + logging.basicConfig( + level=logging.INFO, format="%(name)s - %(levelname)s - %(message)s", handlers=[logging.StreamHandler()] + ) + logger = logging.getLogger(__name__) + return logger + +all_repos=[ + {"subrepo_path": "modules/test", + "submodule_name": "test_submodule", + "status1" : "test_submodule MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", + "status2" : "test_submodule at tag MPIserial_2.4.0", + "status3" : "test_submodule at tag MPIserial_2.4.0", + "status4" : "test_submodule at tag MPIserial_2.4.0", + "gitmodules_content" : """ + [submodule "test_submodule"] + path = modules/test + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.4.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = ToplevelRequired +"""}, + {"subrepo_path": "modules/test_optional", + "submodule_name": "test_optional", + "status1" : "test_optional MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", + "status2" : "test_optional at tag MPIserial_2.4.0", + "status3" : "test_optional not checked out, aligned at tag MPIserial_2.4.0", + "status4" : "test_optional at tag MPIserial_2.4.0", + "gitmodules_content": """ + [submodule "test_optional"] + path = modules/test_optional + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.4.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = ToplevelOptional +"""}, + {"subrepo_path": "modules/test_alwaysoptional", + "submodule_name": "test_alwaysoptional", + "status1" : "test_alwaysoptional MPIserial_2.3.0 is out of sync with .gitmodules e5cf35c", + "status2" : "test_alwaysoptional at hash e5cf35c", + "status3" : "test_alwaysoptional not checked out, out of sync at tag MPIserial_2.3.0", + "status4" : "test_alwaysoptional at hash e5cf35c", + "gitmodules_content": """ + [submodule "test_alwaysoptional"] + path = modules/test_alwaysoptional + url = https://github.com/ESMCI/mpi-serial.git + fxtag = e5cf35c + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = AlwaysOptional +"""}, + {"subrepo_path": "modules/test_sparse", + "submodule_name": "test_sparse", + "status1" : "test_sparse at tag MPIserial_2.5.0", + "status2" : "test_sparse at tag MPIserial_2.5.0", + "status3" : "test_sparse at tag MPIserial_2.5.0", + "status4" : "test_sparse at tag MPIserial_2.5.0", + "gitmodules_content": """ + [submodule "test_sparse"] + path = modules/test_sparse + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.5.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = AlwaysRequired + fxsparse = ../.sparse_file_list +"""}, +] +@pytest.fixture(params=all_repos) + +def shared_repos(request): + return request.param + +@pytest.fixture +def get_all_repos(): + return all_repos + +def write_sparse_checkout_file(fp): + sparse_content = """m4 +""" + fp.write_text(sparse_content) + +@pytest.fixture +def test_repo(shared_repos, tmp_path, logger): + subrepo_path = shared_repos["subrepo_path"] + submodule_name = shared_repos["submodule_name"] + test_dir = tmp_path / "testrepo" + test_dir.mkdir() + str_path = str(test_dir) + gitp = GitInterface(str_path, logger) + assert test_dir.joinpath(".git").is_dir() + (test_dir / "modules").mkdir() + if "sparse" in submodule_name: + (test_dir / subrepo_path).mkdir() + # Add the sparse checkout file + write_sparse_checkout_file(test_dir / "modules" / ".sparse_file_list") + gitp.git_operation("add","modules/.sparse_file_list") + else: + gitp = GitInterface(str(test_dir), logger) + gitp.git_operation("submodule", "add", "--depth","1","--name", submodule_name, "https://github.com/ESMCI/mpi-serial.git", subrepo_path) + assert test_dir.joinpath(".gitmodules").is_file() + gitp.git_operation("add",subrepo_path) + gitp.git_operation("commit","-a","-m","\"add submod\"") + test_dir2 = tmp_path / "testrepo2" + gitp.git_operation("clone",test_dir,test_dir2) + return test_dir2 + + +@pytest.fixture +def complex_repo(tmp_path, logger): + test_dir = tmp_path / "testcomplex" + test_dir.mkdir() + str_path = str(test_dir) + gitp = GitInterface(str_path, logger) + gitp.git_operation("remote", "add", "origin", "https://github.com/jedwards4b/fleximod-test2") + gitp.git_operation("fetch", "origin", "main") + gitp.git_operation("checkout", "main") + return test_dir + +@pytest.fixture +def git_fleximod(): + def _run_fleximod(path, args, input=None): + cmd = ["git", "fleximod"] + args.split() + result = subprocess.run(cmd, cwd=path, input=input, + stdout=subprocess.PIPE, stderr=subprocess.PIPE, + text=True) + if result.returncode: + print(result.stdout) + print(result.stderr) + return result + return _run_fleximod + diff --git a/.lib/git-fleximod/tests/test_a_import.py b/.lib/git-fleximod/tests/test_a_import.py new file mode 100644 index 0000000000..d5ca878de5 --- /dev/null +++ b/.lib/git-fleximod/tests/test_a_import.py @@ -0,0 +1,8 @@ +# pylint: disable=unused-import +from git_fleximod import cli +from git_fleximod import utils +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules + +def test_import(): + print("here") diff --git a/.lib/git-fleximod/tests/test_b_update.py b/.lib/git-fleximod/tests/test_b_update.py new file mode 100644 index 0000000000..159f1cfae0 --- /dev/null +++ b/.lib/git-fleximod/tests/test_b_update.py @@ -0,0 +1,26 @@ +import pytest +from pathlib import Path + +def test_basic_checkout(git_fleximod, test_repo, shared_repos): + # Prepare a simple .gitmodules + gm = shared_repos['gitmodules_content'] + file_path = (test_repo / ".gitmodules") + repo_name = shared_repos["submodule_name"] + repo_path = shared_repos["subrepo_path"] + + file_path.write_text(gm) + + # Run the command + result = git_fleximod(test_repo, f"update {repo_name}") + + # Assertions + assert result.returncode == 0 + assert Path(test_repo / repo_path).exists() # Did the submodule directory get created? + if "sparse" in repo_name: + assert Path(test_repo / f"{repo_path}/m4").exists() # Did the submodule sparse directory get created? + assert not Path(test_repo / f"{repo_path}/README").exists() # Did only the submodule sparse directory get created? + + status = git_fleximod(test_repo, f"status {repo_name}") + + assert shared_repos["status2"] in status.stdout + diff --git a/.lib/git-fleximod/tests/test_c_required.py b/.lib/git-fleximod/tests/test_c_required.py new file mode 100644 index 0000000000..89ab8d294d --- /dev/null +++ b/.lib/git-fleximod/tests/test_c_required.py @@ -0,0 +1,30 @@ +import pytest +from pathlib import Path + +def test_required(git_fleximod, test_repo, shared_repos): + file_path = (test_repo / ".gitmodules") + gm = shared_repos["gitmodules_content"] + repo_name = shared_repos["submodule_name"] + if file_path.exists(): + with file_path.open("r") as f: + gitmodules_content = f.read() + # add the entry if it does not exist + if repo_name not in gitmodules_content: + file_path.write_text(gitmodules_content+gm) + # or if it is incomplete + elif gm not in gitmodules_content: + file_path.write_text(gm) + else: + file_path.write_text(gm) + result = git_fleximod(test_repo, "update") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status3"] in status.stdout + status = git_fleximod(test_repo, f"update --optional") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status4"] in status.stdout + status = git_fleximod(test_repo, f"update {repo_name}") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status4"] in status.stdout diff --git a/.lib/git-fleximod/tests/test_d_complex.py b/.lib/git-fleximod/tests/test_d_complex.py new file mode 100644 index 0000000000..fdce516274 --- /dev/null +++ b/.lib/git-fleximod/tests/test_d_complex.py @@ -0,0 +1,67 @@ +import pytest +from pathlib import Path +from git_fleximod.gitinterface import GitInterface + +def test_complex_checkout(git_fleximod, complex_repo, logger): + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) + assert("ToplevelRequired not checked out, aligned at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired not checked out, aligned at tag MPIserial_2.4.0" in status.stdout) + assert("Complex not checked out, aligned at tag testtag01" in status.stdout) + assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) + + # This should checkout and update test_submodule and complex_sub + result = git_fleximod(complex_repo, "update") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + + # now check the complex_sub + root = (complex_repo / "modules" / "complex") + assert(not (root / "libraries" / "gptl" / ".git").exists()) + assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial" / ".git").exists()) + assert(not (root / "modules" / "mpi-serial2" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / "m4").exists()) + assert(not (root / "modules" / "mpi-sparse" / "README").exists()) + + # update a single optional submodule + + result = git_fleximod(complex_repo, "update ToplevelOptional") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) + + + # Finally update optional + result = git_fleximod(complex_repo, "update --optional") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + assert("AlwaysOptional at tag MPIserial_2.3.0" in status.stdout) + + # now check the complex_sub + root = (complex_repo / "modules" / "complex" ) + assert(not (root / "libraries" / "gptl" / ".git").exists()) + assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial2" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / "m4").exists()) + assert(not (root / "modules" / "mpi-sparse" / "README").exists()) + + diff --git a/bin/git-fleximod b/bin/git-fleximod new file mode 100755 index 0000000000..f69ede1c22 --- /dev/null +++ b/bin/git-fleximod @@ -0,0 +1,8 @@ +#!/usr/bin/env python3 +import sys +import os +sys.path.insert(0,os.path.abspath(os.path.join(os.path.dirname(__file__),"..",".lib","git-fleximod"))) +from git_fleximod.git_fleximod import main + +if __name__ == '__main__': + sys.exit(main()) diff --git a/ccs_config b/ccs_config index f90e10502c..2ff978f92a 160000 --- a/ccs_config +++ b/ccs_config @@ -1 +1 @@ -Subproject commit f90e10502c7246c2b45e373b7dd5e0da6cba0828 +Subproject commit 2ff978f92a5ac9a6ab243e5c14d06a7e2d2f5799 diff --git a/components/cdeps b/components/cdeps index 7a522c828c..7476950699 160000 --- a/components/cdeps +++ b/components/cdeps @@ -1 +1 @@ -Subproject commit 7a522c828c32dc35777992653f281ec525509c4a +Subproject commit 7476950699909813d1938a34bd8d71bf5bfbf1e9 diff --git a/components/mizuRoute b/components/mizuRoute index 0a62ee6185..81c720c7ee 160000 --- a/components/mizuRoute +++ b/components/mizuRoute @@ -1 +1 @@ -Subproject commit 0a62ee6185bdc9b99cd88ed5f15ea850602c43a2 +Subproject commit 81c720c7ee51f9c69f2934f696078c42f4493565 diff --git a/components/mosart b/components/mosart index 1c22a8c547..8c682b1b7f 160000 --- a/components/mosart +++ b/components/mosart @@ -1 +1 @@ -Subproject commit 1c22a8c5478b714cf5b7c54b3e5cf7bad09fd9b2 +Subproject commit 8c682b1b7f15d146816de302e0d359da3e957056 diff --git a/libraries/mct b/libraries/mct index e36024c5dd..82b0071e69 160000 --- a/libraries/mct +++ b/libraries/mct @@ -1 +1 @@ -Subproject commit e36024c5ddf482625ae6bd9474eff7d8f393f87c +Subproject commit 82b0071e69d14330b75d23b0bc68543ebea9aadc diff --git a/libraries/parallelio b/libraries/parallelio index 6539ef05ae..f52ade0756 160000 --- a/libraries/parallelio +++ b/libraries/parallelio @@ -1 +1 @@ -Subproject commit 6539ef05ae7584ec570a56fdab9f7dfb336c2b80 +Subproject commit f52ade075619b32fa141993b5665b0fe099befc2 diff --git a/src/fates b/src/fates index f0185f7c70..adfa664806 160000 --- a/src/fates +++ b/src/fates @@ -1 +1 @@ -Subproject commit f0185f7c7033fa69c80d1ddb07cbcbf1f8be1adc +Subproject commit adfa6648063408d443f5cae671bd37f713d3e3e8 From 51079bfb92ca2d75a71cfee5679bbce40314eaae Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Wed, 29 May 2024 10:17:10 -0600 Subject: [PATCH 04/19] update run_sys_tests.py for fleximod --- python/ctsm/run_sys_tests.py | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/python/ctsm/run_sys_tests.py b/python/ctsm/run_sys_tests.py index de93081504..ecea2342a7 100644 --- a/python/ctsm/run_sys_tests.py +++ b/python/ctsm/run_sys_tests.py @@ -576,12 +576,12 @@ def _record_git_status(testroot, retry, dry_run): if git_status.count("\n") == 1: # Only line in git status is the branch info output += "(clean sandbox)\n" - manic = os.path.join("manage_externals", "checkout_externals") - manage_externals_status = subprocess.check_output( - [manic, "--status", "--verbose"], cwd=ctsm_root, universal_newlines=True + fleximod = os.path.join("bin", "git-fleximod") + fleximod_status = subprocess.check_output( + [fleximod, "status"], cwd=ctsm_root, universal_newlines=True ) - output += 72 * "-" + "\n" + "manage_externals status:" + "\n" - output += manage_externals_status + output += 72 * "-" + "\n" + "git-fleximod status:" + "\n" + output += fleximod_status output += 72 * "-" + "\n" print(output) From 6b550b1aa536fed46d197580614226e16691d1f8 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Wed, 29 May 2024 14:03:29 -0600 Subject: [PATCH 05/19] Replace checkout_externals with git-fleximod in documentation --- .gitignore | 6 ++-- README | 4 +-- README_EXTERNALS.rst | 32 +++++++++---------- bld/CLMBuildNamelist.pm | 2 +- doc/README.CHECKLIST.master_tags | 6 ++-- doc/build_docs | 2 +- doc/design/python_script_user_interface.rst | 2 +- .../obtaining-and-building-ctsm.rst | 6 ++-- doc/source/lilac/specific-atm-models/wrf.rst | 2 +- python/ctsm/site_and_regional/run_neon.py | 2 +- tools/mksurfdata_esmf/README.md | 2 +- 11 files changed, 33 insertions(+), 33 deletions(-) diff --git a/.gitignore b/.gitignore index 1da8072fed..6c8111525a 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,6 @@ -# directories checked out by manage_externals, and other files created -# by manage_externals -manage_externals.log +# directories checked out by git-fleximod, and other files created +# by git-fleximod +git-fleximod.log ccs_config /src/fates/ /cime/ diff --git a/README b/README index 18cc2b1458..97daae2d5a 100644 --- a/README +++ b/README @@ -50,7 +50,7 @@ lilac ------------- Lightweight Infrastructure for Land-Atmosphere Coupling (for test -------------- CTSM Testing scripts for CTSM offline tools (deprecated) tools ------------- CTSM Offline tools to prepare input datasets and process output. cime_config ------- Configuration files of cime for compsets and CTSM settings -manage_externals -- Script to manage the external source directories (deprecated) +git-fleximod ------ Script to manage the external source directories py_env_create ----- Script to setup the python environment for CTSM python tools using conda python ------------ Python modules used in tools and testing and automated checking of ALL CTSM python scirpts @@ -75,7 +75,7 @@ Top level documentation ($CTSMROOT): README ------------------- This file README.md ---------------- File that displays on github under https::/github.com/ESCOMP/CTSM.git README.rst --------------- File that displays under the project in github -README_EXTERNALS.rst ----- Information on how to work with manage_externals for CTSM (deprecated) +README_EXTERNALS.rst ----- Information on how to work with git-fleximod for CTSM CODE_OF_CONDUCT.md ------- Code of Conduct for how to work with each other on the CTSM project Copyright ---------------- CESM Copyright file doc/UpdateChangeLog.pl --- Script to add documentation on a tag to the diff --git a/README_EXTERNALS.rst b/README_EXTERNALS.rst index ed7a068991..22c56ee6f6 100644 --- a/README_EXTERNALS.rst +++ b/README_EXTERNALS.rst @@ -18,11 +18,11 @@ To obtain the CTSM code you need to do the following: This will create a directory ``my_ctsm_sandbox/`` in your current working directory. -#. Run the script **manage_externals/checkout_externals**. :: +#. Run **./bin/git-fleximod update**. :: - ./manage_externals/checkout_externals + ./bin/git-fleximod update - The **checkout_externals** script is a package manager that will + **git-fleximod** is a package manager that will populate the ctsm directory with the relevant versions of each of the components along with the CIME infrastructure code. @@ -30,21 +30,21 @@ At this point you have a working version of CTSM. To see full details of how to set up a case, compile and run, see the CIME documentation at http://esmci.github.io/cime/ . -More details on checkout_externals ----------------------------------- +More details on git-fleximod +---------------------------- The file **Externals.cfg** in your top-level CTSM directory tells -**checkout_externals** which tag/branch of each component should be +**git-fleximod** which tag/branch of each component should be brought in to generate your sandbox. **Externals_CLM.cfg** is used similarly to point to the correct version of FATES (and possibly other CTSM-specific externals in the future); the below instructions referring to **Externals.cfg** also apply to modifying **Externals_CLM.cfg**. -NOTE: checkout_externals will always attempt +NOTE: git-fleximod will always attempt to make the working copy exactly match the externals description. If you manually modify an external without updating Externals.cfg, e.g. switch -to a different tag, then rerunning checkout_externals will switch you +to a different tag, then rerunning git-fleximod will switch you back to the external described in Externals.cfg. See below documentation `Customizing your CTSM sandbox`_ for more details. -**You need to rerun checkout_externals whenever Externals.cfg has +**You need to rerun git-fleximod whenever Externals.cfg has changed** (unless you have already manually updated the relevant external(s) to have the correct branch/tag checked out). Common times when this is needed are: @@ -54,17 +54,17 @@ when this is needed are: * After merging some other CTSM branch/tag into your currently checked-out branch -**checkout_externals** must be run from the root of the source +**git-fleximod** must be run from the root of the source tree. For example, if you cloned CTSM with:: git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox -then you must run **checkout_externals** from +then you must run **git-fleximod** from ``/path/to/my_ctsm_sandbox``. -To see more details of **checkout_externals**, issue :: +To see more details of **git-fleximod**, issue :: - ./manage_externals/checkout_externals --help + ./bin/git-fleximod --help Customizing your CTSM sandbox ============================= @@ -80,7 +80,7 @@ checked out ctsm1.0.0 but really wanted to have ctsm1.1.0; you would simply do the following:: git checkout ctsm1.1.0 - ./manage_externals/checkout_externals + ./bin/git-fleximod update You should **not** use this method if you have made any source code changes, or if you have any ongoing CTSM cases that were created from @@ -107,11 +107,11 @@ Each entry specifies either a tag, a hash or a branch. To point to a new tag: #. Checkout the new component(s):: - ./manage_externals/checkout_externals + ./bin/git-fleximod update To point to a hash, the process is the same, except also change ``tag = ...`` to ``hash = ...``. -To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``manage_externals/checkout_externals`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.) +To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``./bin/git-fleximod update`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.) Keep in mind that changing individual components from a tag may result in an invalid model (won't compile, won't run, not scientifically diff --git a/bld/CLMBuildNamelist.pm b/bld/CLMBuildNamelist.pm index fb44023cd5..1371ea5c06 100755 --- a/bld/CLMBuildNamelist.pm +++ b/bld/CLMBuildNamelist.pm @@ -366,7 +366,7 @@ sub check_for_perl_utils { } else { die <<"EOF"; ** Cannot find the root of the cime directory enter it using the -cimeroot option - Did you run the checkout_externals scripts? + Did you run ./bin/git-fleximod update? EOF } } diff --git a/doc/README.CHECKLIST.master_tags b/doc/README.CHECKLIST.master_tags index ed7794130b..0da52acaaa 100644 --- a/doc/README.CHECKLIST.master_tags +++ b/doc/README.CHECKLIST.master_tags @@ -14,9 +14,9 @@ https://github.com/ESCOMP/ctsm/wiki/CTSM-development-workflow 2a -- run 'git pull' to pull in the latest version from GitHub 2b -- run 'git status' and/or 'git diff' to make sure you don't have any uncommitted local changes - 2c -- run './manage_externals/checkout_externals -S' to make sure all externals are - updated and don't have any uncommitted changes. (If any are marked with 's' in - the first column, run ./manage_externals/checkout_externals to update them.) + 2c -- run './bin/git-fleximod status' to make sure all externals are + updated and don't have any uncommitted changes. If any are marked with 's' in + the first column, run './bin/git-fleximod update'. (3) Do all testing on your fork/feature-branch diff --git a/doc/build_docs b/doc/build_docs index a8e8099b60..45c7099ec5 100755 --- a/doc/build_docs +++ b/doc/build_docs @@ -6,5 +6,5 @@ if [ -f doc-builder/build_docs ]; then echo "Running: ./doc-builder/build_docs $@" ./doc-builder/build_docs "$@" else - echo "Obtain doc-builder by running ./manage_externals/checkout_externals -o from the top-level" + echo "Obtain doc-builder by running './bin/git-fleximod update --optional' from the top-level" fi diff --git a/doc/design/python_script_user_interface.rst b/doc/design/python_script_user_interface.rst index 87c1b3e8fc..d639117810 100644 --- a/doc/design/python_script_user_interface.rst +++ b/doc/design/python_script_user_interface.rst @@ -66,7 +66,7 @@ For logical flags, use a flag without an argument -- ``--feature`` for the case We try to follow the guide at the top of `Python's logging howto `_. In particular, print statements should be used for "console output for ordinary usage of a command line script or program"; ``logger.info`` or ``logger.debug`` should be used to "report events that occur during normal operation of a program (e.g. for status monitoring or fault investigation)", etc. -The distinction between when to use print and when to use logging can admittedly be a bit subjective, as it comes down to the question of whether the given output is part of the fundamental operation of the script – i.e., part of what the script is designed to do is to give this output. For example, ``run_sys_tests`` prints a variety of information when it starts, particularly concerning the git and manage_externals status of the current repository. The rationale for using ``print`` statements for this is that we designed ``run_sys_tests`` to replace some of the repetitive items that we did whenever running the system tests. One of these items was running ``git status`` and ``./manage_externals/checkout_externals -S -v`` to check that the repository is in a clean state. Thus, in this case, our view is that the output from these commands is part of the fundamental purpose of ``run_sys_tests``: it is something we always want to see, and we feel that it is important for anyone running the system tests to review, and thus ``print`` statements are appropriate here. +The distinction between when to use print and when to use logging can admittedly be a bit subjective, as it comes down to the question of whether the given output is part of the fundamental operation of the script – i.e., part of what the script is designed to do is to give this output. For example, ``run_sys_tests`` prints a variety of information when it starts, particularly concerning the git and git-fleximod status of the current repository. The rationale for using ``print`` statements for this is that we designed ``run_sys_tests`` to replace some of the repetitive items that we did whenever running the system tests. One of these items was running ``git status`` and ``./bin/git-fleximod status --verbose`` to check that the repository is in a clean state. Thus, in this case, our view is that the output from these commands is part of the fundamental purpose of ``run_sys_tests``: it is something we always want to see, and we feel that it is important for anyone running the system tests to review, and thus ``print`` statements are appropriate here. In general, ``print`` statements should be used sparingly, just for output that is important for the user to see. That said, users of CTSM scripts often expect more output than you would see from a typical Unix tool (where the philosophy is that there should be no output if everything worked correctly). Some examples of things that users of CTSM scripts typically want to see are: diff --git a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst index c0e510c017..ef24e695b9 100644 --- a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst +++ b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst @@ -26,7 +26,7 @@ Obtain CTSM by running:: git clone https://github.com/ESCOMP/CTSM.git cd CTSM - ./manage_externals/checkout_externals + ./bin/git-fleximod update Then build CTSM and its dependencies. On a machine that has been ported to CIME, the command will look like this (example given for NCAR's ``cheyenne`` machine):: @@ -101,11 +101,11 @@ above`) can be obtained with:: git clone https://github.com/ESCOMP/CTSM.git cd CTSM - ./manage_externals/checkout_externals + ./bin/git-fleximod update By default, this will put you on the ``master`` branch of CTSM, which is the main development branch. You can checkout a different branch or tag using ``git checkout``; -**be sure to rerun** ``./manage_externals/checkout_externals`` **after doing so.** +**be sure to rerun** ``./bin/git-fleximod update`` **after doing so.** For more details, see https://github.com/ESCOMP/CTSM/wiki/Quick-start-to-CTSM-development-with-git diff --git a/doc/source/lilac/specific-atm-models/wrf.rst b/doc/source/lilac/specific-atm-models/wrf.rst index 5d104778ec..ad85fee777 100644 --- a/doc/source/lilac/specific-atm-models/wrf.rst +++ b/doc/source/lilac/specific-atm-models/wrf.rst @@ -44,7 +44,7 @@ Clone the CTSM repository:: git clone https://github.com/ESCOMP/CTSM.git cd CTSM - ./manage_externals/checkout_externals + ./bin/git-fleximod update .. _build-CTSM-and-dependencies: diff --git a/python/ctsm/site_and_regional/run_neon.py b/python/ctsm/site_and_regional/run_neon.py index 4b0df2722d..3acbf435b1 100755 --- a/python/ctsm/site_and_regional/run_neon.py +++ b/python/ctsm/site_and_regional/run_neon.py @@ -41,7 +41,7 @@ # - [ ] Case dependency and the ability to check case status # - [ ] If Case dependency works we don't need finidat given explicilty for post-ad and transient. -# - [ ] checkout_externals instead of using env varaiable +# - [ ] "./bin/git-fleximod update" instead of using env variable # - [ ] wget the fields available and run for those available # - [ ] Matrix spin-up if (SASU) Eric merged it in diff --git a/tools/mksurfdata_esmf/README.md b/tools/mksurfdata_esmf/README.md index 11cb69c681..3d19c88ff0 100644 --- a/tools/mksurfdata_esmf/README.md +++ b/tools/mksurfdata_esmf/README.md @@ -93,7 +93,7 @@ https://github.com/ESCOMP/CTSM/issues/2341 ``` shell # Assuming pwd is the tools/mksurfdata_esmf directory - ./manage_externals/checkout_externals # Assuming at the top level of the CTSM/CESM checkout + ./bin/git-fleximod update # Assuming at the top level of the CTSM/CESM checkout ``` This will bring in CIME and ccs_config which are required for building. From 612962280d766d86497ae5747c10d8af33623121 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Wed, 29 May 2024 14:32:40 -0600 Subject: [PATCH 06/19] Restore .gitignore as it was --- .gitignore | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index 6c8111525a..1da8072fed 100644 --- a/.gitignore +++ b/.gitignore @@ -1,6 +1,6 @@ -# directories checked out by git-fleximod, and other files created -# by git-fleximod -git-fleximod.log +# directories checked out by manage_externals, and other files created +# by manage_externals +manage_externals.log ccs_config /src/fates/ /cime/ From 5a577cdf701d028393bacc12bfde1749c9a9a2d8 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Wed, 29 May 2024 14:34:26 -0600 Subject: [PATCH 07/19] Delete README_EXTERNALS.rst to be like #2559 --- README_EXTERNALS.rst | 132 ------------------------------------------- 1 file changed, 132 deletions(-) delete mode 100644 README_EXTERNALS.rst diff --git a/README_EXTERNALS.rst b/README_EXTERNALS.rst deleted file mode 100644 index 22c56ee6f6..0000000000 --- a/README_EXTERNALS.rst +++ /dev/null @@ -1,132 +0,0 @@ -Obtaining the full model code and associated scripting infrastructure -===================================================================== - -[!CAUTION] -This is deprecated and will be replaced with git submodules. See -https://github.com/ESCOMP/CTSM/pull/2443 - - -CTSM is released via GitHub. You will need some familiarity with git in order -to modify the code and commit these changes. However, to simply checkout and run the -code, no git knowledge is required other than what is documented in the following steps. - -To obtain the CTSM code you need to do the following: - -#. Clone the repository. :: - - git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox - - This will create a directory ``my_ctsm_sandbox/`` in your current working directory. - -#. Run **./bin/git-fleximod update**. :: - - ./bin/git-fleximod update - - **git-fleximod** is a package manager that will - populate the ctsm directory with the relevant versions of each of the - components along with the CIME infrastructure code. - -At this point you have a working version of CTSM. - -To see full details of how to set up a case, compile and run, see the CIME documentation at http://esmci.github.io/cime/ . - -More details on git-fleximod ----------------------------- - -The file **Externals.cfg** in your top-level CTSM directory tells -**git-fleximod** which tag/branch of each component should be -brought in to generate your sandbox. **Externals_CLM.cfg** is used similarly to point to the correct version of FATES (and possibly other CTSM-specific externals in the future); the below instructions referring to **Externals.cfg** also apply to modifying **Externals_CLM.cfg**. - -NOTE: git-fleximod will always attempt -to make the working copy exactly match the externals description. If -you manually modify an external without updating Externals.cfg, e.g. switch -to a different tag, then rerunning git-fleximod will switch you -back to the external described in Externals.cfg. See below -documentation `Customizing your CTSM sandbox`_ for more details. - -**You need to rerun git-fleximod whenever Externals.cfg has -changed** (unless you have already manually updated the relevant -external(s) to have the correct branch/tag checked out). Common times -when this is needed are: - -* After checking out a new CTSM branch/tag - -* After merging some other CTSM branch/tag into your currently - checked-out branch - -**git-fleximod** must be run from the root of the source -tree. For example, if you cloned CTSM with:: - - git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox - -then you must run **git-fleximod** from -``/path/to/my_ctsm_sandbox``. - -To see more details of **git-fleximod**, issue :: - - ./bin/git-fleximod --help - -Customizing your CTSM sandbox -============================= - -There are several use cases to consider when you want to customize or modify your CTSM sandbox. - -Switching to a different CTSM branch or tag -------------------------------------------- - -If you have already checked out a branch or tag and **HAVE NOT MADE ANY -MODIFICATIONS** it is simple to change your sandbox. Say that you -checked out ctsm1.0.0 but really wanted to have ctsm1.1.0; -you would simply do the following:: - - git checkout ctsm1.1.0 - ./bin/git-fleximod update - -You should **not** use this method if you have made any source code -changes, or if you have any ongoing CTSM cases that were created from -this sandbox. In these cases, it is often easiest to do a second **git -clone**. - -Pointing to a different version of a component ----------------------------------------------- - -Each entry in **Externals.cfg** has the following form (we use CIME as an -example below):: - - [cime] - local_path = cime - protocol = git - repo_url = https://github.com/CESM-Development/cime - tag = cime5.4.0-alpha.20 - required = True - -Each entry specifies either a tag, a hash or a branch. To point to a new tag: - -#. Modify the relevant entry/entries in **Externals.cfg** (e.g., changing - ``cime5.4.0-alpha.20`` to ``cime5.4.0-alpha.21`` above) - -#. Checkout the new component(s):: - - ./bin/git-fleximod update - -To point to a hash, the process is the same, except also change ``tag = ...`` to ``hash = ...``. - -To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``./bin/git-fleximod update`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.) - -Keep in mind that changing individual components from a tag may result -in an invalid model (won't compile, won't run, not scientifically -meaningful) and is unsupported. - -Committing your change to Externals.cfg -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - -After making this change, it's a good idea to commit the change in your -local CTSM git repository. First create a branch in your local -repository, then commit it. (Unlike with subversion, branches are stored -locally unless you explicitly push them up to GitHub. Feel free to -create whatever local branches you'd like.) For example:: - - git checkout -b my_ctsm_branch - git add Externals.cfg - git commit -m "Update CIME to cime5.4.0-alpha.20" - From 61c97a13ebf81bb28f4bbac7aa1072c9f544c85b Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Wed, 29 May 2024 15:27:22 -0600 Subject: [PATCH 08/19] Add dummy ./manage_externals/checkout_externals with ERROR message --- manage_externals/checkout_externals | 3 +++ 1 file changed, 3 insertions(+) create mode 100755 manage_externals/checkout_externals diff --git a/manage_externals/checkout_externals b/manage_externals/checkout_externals new file mode 100755 index 0000000000..5f848f5da9 --- /dev/null +++ b/manage_externals/checkout_externals @@ -0,0 +1,3 @@ +echo "ERROR: Instead of ./manage_externals/checkout_externals" +echo "please type './bin/git-fleximod update'" +echo "For additional information, please type './bin/git-fleximod --help'" From 1ed3f1967ed4564e2809841ca8a99b09a479299f Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Wed, 29 May 2024 16:46:46 -0600 Subject: [PATCH 09/19] Replace cheyenne with derecho in a .rst file --- .../obtaining-and-building-ctsm.rst | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst index ef24e695b9..907f63f211 100644 --- a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst +++ b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst @@ -29,9 +29,9 @@ Obtain CTSM by running:: ./bin/git-fleximod update Then build CTSM and its dependencies. On a machine that has been ported to CIME, the -command will look like this (example given for NCAR's ``cheyenne`` machine):: +command will look like this (example given for NCAR's ``derecho`` machine):: - ./lilac/build_ctsm /glade/scratch/$USER/ctsm_build_dir --machine cheyenne --compiler intel + ./lilac/build_ctsm /glade/scratch/$USER/ctsm_build_dir --machine derecho --compiler intel and then, before building the atmosphere model:: @@ -145,13 +145,13 @@ the `CIME documentation`_. Building on a CIME-supported machine ------------------------------------ -If you are using a machine that has been ported to CIME_ (for example, NCAR's ``cheyenne`` +If you are using a machine that has been ported to CIME_ (for example, NCAR's ``derecho`` machine), then you do not need to specify much information to ``build_ctsm``. In addition, in this case, CIME will load the appropriate modules and set the appropriate environment variables at build time, so you do not need to do anything to set up your environment ahead of time. **Building CTSM with LILAC requires ESMF. ESMF is currently an optional CIME dependency, so many CIME-ported machines do not provide information on an ESMF -installation. NCAR's cheyenne machine DOES provide ESMF, but for other machines, you may +installation. NCAR's derecho machine DOES provide ESMF, but for other machines, you may need to add this to your CIME port.** To build CTSM and its dependencies in this case, run:: @@ -231,7 +231,7 @@ Example usage for a Mac (a simple case) is:: ./lilac/build_ctsm ~/ctsm_build_dir --os Darwin --compiler gnu --netcdf-path /usr/local --esmf-mkfile-path /Users/sacks/ESMF/esmf8.0.0/lib/libO/Darwin.gfortranclang.64.mpich3.default/esmf.mk --max-mpitasks-per-node 4 --no-pnetcdf -Example usage for NCAR's ``cheyenne`` machine (a more complex case) is:: +Example usage for NCAR's ``derecho`` machine (a more complex case) is:: module purge module load ncarenv/1.3 python/3.7.9 cmake intel/19.1.1 esmf_libs mkl From 4f9db007afa9b3e1705c7bad78c2cc71714d9cd6 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Thu, 30 May 2024 11:51:36 -0600 Subject: [PATCH 10/19] Add "bin/" before git-fleximod in README documentation --- README | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README b/README index 97daae2d5a..07d9c7b13d 100644 --- a/README +++ b/README @@ -50,7 +50,7 @@ lilac ------------- Lightweight Infrastructure for Land-Atmosphere Coupling (for test -------------- CTSM Testing scripts for CTSM offline tools (deprecated) tools ------------- CTSM Offline tools to prepare input datasets and process output. cime_config ------- Configuration files of cime for compsets and CTSM settings -git-fleximod ------ Script to manage the external source directories +bin/git-fleximod -- Script to manage the external source directories py_env_create ----- Script to setup the python environment for CTSM python tools using conda python ------------ Python modules used in tools and testing and automated checking of ALL CTSM python scirpts From 8ac86a1f21704e952b5dbb753f51cb4ddcfd47f4 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Thu, 30 May 2024 12:10:04 -0600 Subject: [PATCH 11/19] Replacing README_EXTERNALS.rst with README_GITFLEXIMOD.rst --- README_GITFLEXIMOD.rst | 127 +++++++++++++++++++++++++++++++++++++++++ 1 file changed, 127 insertions(+) create mode 100644 README_GITFLEXIMOD.rst diff --git a/README_GITFLEXIMOD.rst b/README_GITFLEXIMOD.rst new file mode 100644 index 0000000000..f91ef30fae --- /dev/null +++ b/README_GITFLEXIMOD.rst @@ -0,0 +1,127 @@ +Obtaining the full model code and associated scripting infrastructure +===================================================================== + +CTSM is released via GitHub. You will need some familiarity with git in order +to modify the code and commit these changes. However, to simply checkout and run the +code, no git knowledge is required other than what is documented in the following steps. + +To obtain the CTSM code you need to do the following: + +#. Clone the repository. :: + + git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox + + This will create a directory ``my_ctsm_sandbox/`` in your current working directory. + +#. Run **./bin/git-fleximod update**. :: + + ./bin/git-fleximod update + + **git-fleximod** is a package manager that will + populate the ctsm directory with the relevant versions of each of the + components along with the CIME infrastructure code. + +At this point you have a working version of CTSM. + +To see full details of how to set up a case, compile and run, see the CIME documentation at http://esmci.github.io/cime/ . + +More details on git-fleximod +---------------------------- + +The file **Externals.cfg** in your top-level CTSM directory tells +**git-fleximod** which tag/branch of each component should be +brought in to generate your sandbox. **Externals_CLM.cfg** is used similarly to point to the correct version of FATES (and possibly other CTSM-specific externals in the future); the below instructions referring to **Externals.cfg** also apply to modifying **Externals_CLM.cfg**. + +NOTE: git-fleximod will always attempt +to make the working copy exactly match the externals description. If +you manually modify an external without updating Externals.cfg, e.g. switch +to a different tag, then rerunning git-fleximod will switch you +back to the external described in Externals.cfg. See below +documentation `Customizing your CTSM sandbox`_ for more details. + +**You need to rerun git-fleximod whenever Externals.cfg has +changed** (unless you have already manually updated the relevant +external(s) to have the correct branch/tag checked out). Common times +when this is needed are: + +* After checking out a new CTSM branch/tag + +* After merging some other CTSM branch/tag into your currently + checked-out branch + +**./bin/git-fleximod** must be run from the root of the source +tree. For example, if you cloned CTSM with:: + + git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox + +then you must run **./bin/git-fleximod** from +``/path/to/my_ctsm_sandbox``. + +To see more details of **git-fleximod**, issue :: + + ./bin/git-fleximod --help + +Customizing your CTSM sandbox +============================= + +There are several use cases to consider when you want to customize or modify your CTSM sandbox. + +Switching to a different CTSM branch or tag +------------------------------------------- + +If you have already checked out a branch or tag and **HAVE NOT MADE ANY +MODIFICATIONS** it is simple to change your sandbox. Say that you +checked out ctsm1.0.0 but really wanted to have ctsm1.1.0; +you would simply do the following:: + + git checkout ctsm1.1.0 + ./bin/git-fleximod + +You should **not** use this method if you have made any source code +changes, or if you have any ongoing CTSM cases that were created from +this sandbox. In these cases, it is often easiest to do a second **git +clone**. + +Pointing to a different version of a component +---------------------------------------------- + +Each entry in **Externals.cfg** has the following form (we use CIME as an +example below):: + + [cime] + local_path = cime + protocol = git + repo_url = https://github.com/CESM-Development/cime + tag = cime5.4.0-alpha.20 + required = True + +Each entry specifies either a tag, a hash or a branch. To point to a new tag: + +#. Modify the relevant entry/entries in **Externals.cfg** (e.g., changing + ``cime5.4.0-alpha.20`` to ``cime5.4.0-alpha.21`` above) + +#. Checkout the new component(s):: + + ./bin/git-fleximod + +To point to a hash, the process is the same, except also change ``tag = ...`` to ``hash = ...``. + +To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``./bin/git-fleximod`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.) + +Keep in mind that changing individual components from a tag may result +in an invalid model (won't compile, won't run, not scientifically +meaningful) and is unsupported. + +Committing your change to Externals.cfg +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + +After making this change, it's a good idea to commit the change in your +local CTSM git repository. First create a branch in your local +repository, then commit it. (Unlike with subversion, branches are stored +locally unless you explicitly push them up to GitHub. Feel free to +create whatever local branches you'd like.) For example:: + + git checkout -b my_ctsm_branch + git add Externals.cfg + git commit -m "Update CIME to cime5.4.0-alpha.20" + From 03762a081fd3f283c4ff1b9336fe14b7f71a051a Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Thu, 30 May 2024 16:08:27 -0600 Subject: [PATCH 12/19] Updates to README_GITFLEXIMOD.rst as per Jim's review --- README_GITFLEXIMOD.rst | 68 +++++++++++++++++------------------------- 1 file changed, 28 insertions(+), 40 deletions(-) diff --git a/README_GITFLEXIMOD.rst b/README_GITFLEXIMOD.rst index f91ef30fae..ab8c412cee 100644 --- a/README_GITFLEXIMOD.rst +++ b/README_GITFLEXIMOD.rst @@ -15,11 +15,15 @@ To obtain the CTSM code you need to do the following: #. Run **./bin/git-fleximod update**. :: + cd my_ctsm_sandbox ./bin/git-fleximod update + ./bin/git-fleximod --help # for a user's guide **git-fleximod** is a package manager that will populate the ctsm directory with the relevant versions of each of the components along with the CIME infrastructure code. + Additional documentation for git-fleximod appears here: + https://github.com/ESMCI/git-fleximod?tab=readme-ov-file#git-fleximod At this point you have a working version of CTSM. @@ -28,18 +32,18 @@ To see full details of how to set up a case, compile and run, see the CIME docum More details on git-fleximod ---------------------------- -The file **Externals.cfg** in your top-level CTSM directory tells +The file **.gitmodules** in your top-level CTSM directory tells **git-fleximod** which tag/branch of each component should be -brought in to generate your sandbox. **Externals_CLM.cfg** is used similarly to point to the correct version of FATES (and possibly other CTSM-specific externals in the future); the below instructions referring to **Externals.cfg** also apply to modifying **Externals_CLM.cfg**. +brought in to generate your sandbox. -NOTE: git-fleximod will always attempt -to make the working copy exactly match the externals description. If -you manually modify an external without updating Externals.cfg, e.g. switch -to a different tag, then rerunning git-fleximod will switch you -back to the external described in Externals.cfg. See below -documentation `Customizing your CTSM sandbox`_ for more details. +NOTE: If you manually modify an external without updating .gitmodules, +e.g. switch to a different tag, then rerunning git-fleximod will warn you of +local changes you need to resolve. +git-fleximod will not change a modified external back to what is specified in +.gitmodules without the --force option. +See below documentation `Customizing your CTSM sandbox`_ for more details. -**You need to rerun git-fleximod whenever Externals.cfg has +**You need to rerun git-fleximod whenever .gitmodules has changed** (unless you have already manually updated the relevant external(s) to have the correct branch/tag checked out). Common times when this is needed are: @@ -49,18 +53,6 @@ when this is needed are: * After merging some other CTSM branch/tag into your currently checked-out branch -**./bin/git-fleximod** must be run from the root of the source -tree. For example, if you cloned CTSM with:: - - git clone https://github.com/escomp/ctsm.git my_ctsm_sandbox - -then you must run **./bin/git-fleximod** from -``/path/to/my_ctsm_sandbox``. - -To see more details of **git-fleximod**, issue :: - - ./bin/git-fleximod --help - Customizing your CTSM sandbox ============================= @@ -75,7 +67,7 @@ checked out ctsm1.0.0 but really wanted to have ctsm1.1.0; you would simply do the following:: git checkout ctsm1.1.0 - ./bin/git-fleximod + ./bin/git-fleximod update You should **not** use this method if you have made any source code changes, or if you have any ongoing CTSM cases that were created from @@ -85,35 +77,31 @@ clone**. Pointing to a different version of a component ---------------------------------------------- -Each entry in **Externals.cfg** has the following form (we use CIME as an +Each entry in **.gitmodules** has the following form (we use CIME as an example below):: - [cime] - local_path = cime - protocol = git - repo_url = https://github.com/CESM-Development/cime - tag = cime5.4.0-alpha.20 - required = True + [submodule "cime"] + path = cime + url = https://github.com/ESMCI/cime + fxtag = cime6.0.246 + fxrequired = ToplevelRequired + fxDONOTUSEurl = https://github.com/ESMCI/cime -Each entry specifies either a tag, a hash or a branch. To point to a new tag: +Each entry specifies either a tag or a hash. To point to a new tag or hash: -#. Modify the relevant entry/entries in **Externals.cfg** (e.g., changing - ``cime5.4.0-alpha.20`` to ``cime5.4.0-alpha.21`` above) +#. Modify the relevant entry/entries in **.gitmodules** (e.g., changing + ``cime6.0.246`` to ``cime6.0.247`` above) #. Checkout the new component(s):: - ./bin/git-fleximod - -To point to a hash, the process is the same, except also change ``tag = ...`` to ``hash = ...``. - -To point to a branch, use ``branch = ...``. Pointing to a branch means that, each time you run ``./bin/git-fleximod`` you will get the current latest version of that branch. This can be convenient for in-progress development work, but should not be used when you need a stable version for scientific simulations. There are a number of gotchas with this workflow, so in general you should default to pointing to fixed hashes. (For CTSM master, we require a fixed hash or, usually, a tag.) + ./bin/git-fleximod update Keep in mind that changing individual components from a tag may result in an invalid model (won't compile, won't run, not scientifically meaningful) and is unsupported. -Committing your change to Externals.cfg -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +Committing your change to .gitmodules +~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ After making this change, it's a good idea to commit the change in your local CTSM git repository. First create a branch in your local @@ -122,6 +110,6 @@ locally unless you explicitly push them up to GitHub. Feel free to create whatever local branches you'd like.) For example:: git checkout -b my_ctsm_branch - git add Externals.cfg + git add .gitmodules git commit -m "Update CIME to cime5.4.0-alpha.20" From 6fa0255660c848b4f49603511b1da79750b686c8 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Thu, 30 May 2024 16:09:26 -0600 Subject: [PATCH 13/19] Jim's suggestions for doc/.../lilac/.../obtaining-and-building-ctsm.rst --- .../obtaining-and-building-ctsm.rst | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst index 907f63f211..fcd8235b62 100644 --- a/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst +++ b/doc/source/lilac/obtaining-building-and-running/obtaining-and-building-ctsm.rst @@ -91,7 +91,7 @@ Building CTSM requires: - ESMF version 8 or later - - **ESMF is not needed in general for CTSM, but is needed for LILAC** + - **ESMF is needed for LILAC (and for CESM3 and later)** Obtaining CTSM ============== @@ -149,10 +149,11 @@ If you are using a machine that has been ported to CIME_ (for example, NCAR's `` machine), then you do not need to specify much information to ``build_ctsm``. In addition, in this case, CIME will load the appropriate modules and set the appropriate environment variables at build time, so you do not need to do anything to set up your environment -ahead of time. **Building CTSM with LILAC requires ESMF. ESMF is currently an optional -CIME dependency, so many CIME-ported machines do not provide information on an ESMF -installation. NCAR's derecho machine DOES provide ESMF, but for other machines, you may -need to add this to your CIME port.** +ahead of time. **Building CTSM with LILAC requires ESMF. ESMF is an optional +CIME dependency before CESM3 and not optional for CESM3. +NCAR's derecho machine DOES provide ESMF. For other machines, you may +need to add this to your CIME port. Please see esmf.org for download and build +instructions.** To build CTSM and its dependencies in this case, run:: From ae93d22bfee601a9fbe4561cedbd77945ab23bbf Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Thu, 30 May 2024 16:42:18 -0600 Subject: [PATCH 14/19] Remove cheyenne from testlis_clm.xml --- cime_config/testdefs/testlist_clm.xml | 651 +------------------------- 1 file changed, 1 insertion(+), 650 deletions(-) diff --git a/cime_config/testdefs/testlist_clm.xml b/cime_config/testdefs/testlist_clm.xml index 9cfba6f5b3..1ac2334ba8 100644 --- a/cime_config/testdefs/testlist_clm.xml +++ b/cime_config/testdefs/testlist_clm.xml @@ -43,8 +43,6 @@ - - @@ -259,24 +257,14 @@ --> - - - - - - - - - - @@ -360,8 +348,6 @@ - - @@ -422,15 +408,6 @@ - - - - - - - - - @@ -440,14 +417,6 @@ - - - - - - - - @@ -456,14 +425,6 @@ - - - - - - - - @@ -474,7 +435,6 @@ - @@ -483,8 +443,6 @@ - - @@ -494,7 +452,6 @@ - @@ -512,7 +469,6 @@ - @@ -539,8 +495,6 @@ - - @@ -548,15 +502,6 @@ - - - - - - - - - @@ -568,7 +513,6 @@ - @@ -788,7 +732,6 @@ - @@ -798,7 +741,6 @@ - @@ -808,7 +750,6 @@ - @@ -817,8 +758,6 @@ - - @@ -828,7 +767,6 @@ - @@ -838,8 +776,6 @@ - - @@ -857,7 +793,6 @@ - @@ -866,8 +801,6 @@ - - @@ -877,7 +810,6 @@ - @@ -922,15 +854,6 @@ - - - - - - - - - @@ -940,15 +863,6 @@ - - - - - - - - - @@ -960,7 +874,6 @@ - @@ -984,17 +897,6 @@ - - - - - - - - - - - @@ -1006,14 +908,6 @@ - - - - - - - - @@ -1022,15 +916,6 @@ - - - - - - - - - @@ -1058,14 +943,6 @@ - - - - - - - - @@ -1074,14 +951,6 @@ - - - - - - - - @@ -1090,14 +959,6 @@ - - - - - - - - @@ -1106,15 +967,6 @@ - - - - - - - - - @@ -1124,15 +976,6 @@ - - - - - - - - - @@ -1142,15 +985,6 @@ - - - - - - - - - @@ -1160,15 +994,6 @@ - - - - - - - - - @@ -1180,8 +1005,6 @@ - - @@ -1201,7 +1024,6 @@ - @@ -1210,8 +1032,6 @@ - - @@ -1229,7 +1049,6 @@ - @@ -1286,15 +1105,6 @@ - - - - - - - - - @@ -1306,7 +1116,6 @@ - @@ -1314,15 +1123,6 @@ - - - - - - - - - @@ -1333,14 +1133,6 @@ - - - - - - - - @@ -1349,15 +1141,6 @@ - - - - - - - - - @@ -1367,15 +1150,6 @@ - - - - - - - - - @@ -1387,23 +1161,12 @@ - - - - - - - - - - - @@ -1414,16 +1177,6 @@ - - - - - - - - - - @@ -1434,16 +1187,6 @@ - - - - - - - - - - @@ -1454,15 +1197,6 @@ - - - - - - - - - @@ -1472,14 +1206,6 @@ - - - - - - - - @@ -1489,15 +1215,6 @@ - - - - - - - - - @@ -1507,16 +1224,6 @@ - - - - - - - - - - @@ -1527,14 +1234,6 @@ - - - - - - - - @@ -1543,15 +1242,6 @@ - - - - - - - - - @@ -1561,16 +1251,6 @@ - - - - - - - - - - @@ -1581,16 +1261,6 @@ - - - - - - - - - - @@ -1603,22 +1273,12 @@ - - - - - - - - - - @@ -1639,7 +1299,6 @@ - @@ -1649,7 +1308,6 @@ - @@ -1659,7 +1317,6 @@ - @@ -1667,15 +1324,6 @@ - - - - - - - - - @@ -1687,10 +1335,6 @@ - - - - @@ -1702,7 +1346,6 @@ - @@ -1712,7 +1355,6 @@ - @@ -1721,7 +1363,6 @@ - @@ -1730,8 +1371,6 @@ - - @@ -1750,7 +1389,6 @@ - @@ -1805,7 +1443,6 @@ - @@ -1822,15 +1459,6 @@ - - - - - - - - - @@ -1840,15 +1468,6 @@ - - - - - - - - - @@ -1858,15 +1477,6 @@ - - - - - - - - - @@ -1878,7 +1488,6 @@ - @@ -1888,8 +1497,6 @@ - - @@ -1900,7 +1507,6 @@ - @@ -1931,7 +1537,6 @@ - @@ -1939,15 +1544,6 @@ - - - - - - - - - @@ -1959,7 +1555,6 @@ - @@ -1969,8 +1564,6 @@ - - @@ -1981,8 +1574,6 @@ - - @@ -1992,8 +1583,6 @@ - - @@ -2010,16 +1599,6 @@ - - - - - - - - - - @@ -2033,7 +1612,6 @@ - @@ -2043,7 +1621,6 @@ - @@ -2053,8 +1630,6 @@ - - @@ -2146,7 +1721,6 @@ - @@ -2156,7 +1730,6 @@ - @@ -2166,7 +1739,6 @@ - @@ -2204,12 +1776,10 @@ - - @@ -2225,16 +1795,6 @@ - - - - - - - - - - @@ -2255,10 +1815,6 @@ - - - - @@ -2270,9 +1826,6 @@ - - - @@ -2283,7 +1836,6 @@ - @@ -2292,8 +1844,6 @@ - - @@ -2356,20 +1906,9 @@ - - - - - - - - - - - - + @@ -2407,7 +1946,6 @@ - @@ -2426,7 +1964,6 @@ - @@ -2436,7 +1973,6 @@ - @@ -2456,7 +1992,6 @@ - @@ -2482,7 +2017,6 @@ - @@ -2492,7 +2026,6 @@ - @@ -2502,7 +2035,6 @@ - @@ -2584,7 +2116,6 @@ - @@ -2594,8 +2125,6 @@ - - @@ -2632,7 +2161,6 @@ - @@ -2642,7 +2170,6 @@ - @@ -2651,7 +2178,6 @@ - @@ -2660,8 +2186,6 @@ - - @@ -2690,7 +2214,6 @@ - @@ -2700,7 +2223,6 @@ - @@ -2710,7 +2232,6 @@ - @@ -2740,7 +2261,6 @@ - @@ -2759,8 +2279,6 @@ - - @@ -2771,7 +2289,6 @@ - @@ -2780,7 +2297,6 @@ - @@ -2790,7 +2306,6 @@ - @@ -2799,8 +2314,6 @@ - - @@ -2819,7 +2332,6 @@ - @@ -2829,8 +2341,6 @@ - - @@ -2838,14 +2348,6 @@ - - - - - - - - @@ -2856,12 +2358,9 @@ - - - @@ -2870,7 +2369,6 @@ - @@ -2879,7 +2377,6 @@ - @@ -2889,7 +2386,6 @@ - @@ -2900,7 +2396,6 @@ - @@ -2911,7 +2406,6 @@ - @@ -2922,7 +2416,6 @@ - @@ -2930,16 +2423,6 @@ - - - - - - - - - - @@ -2972,18 +2455,6 @@ - - - - - - - - - - - - @@ -2995,7 +2466,6 @@ - @@ -3003,18 +2473,6 @@ - - - - - - - - - - - - @@ -3027,7 +2485,6 @@ - @@ -3038,7 +2495,6 @@ - @@ -3048,7 +2504,6 @@ - @@ -3056,15 +2511,6 @@ - - - - - - - - - @@ -3076,7 +2522,6 @@ - @@ -3087,7 +2532,6 @@ - @@ -3098,7 +2542,6 @@ - @@ -3110,7 +2553,6 @@ - @@ -3121,7 +2563,6 @@ - @@ -3131,8 +2572,6 @@ - - @@ -3144,7 +2583,6 @@ - @@ -3155,7 +2593,6 @@ - @@ -3167,10 +2604,8 @@ - - @@ -3181,7 +2616,6 @@ - @@ -3192,7 +2626,6 @@ - @@ -3204,7 +2637,6 @@ - @@ -3215,7 +2647,6 @@ - @@ -3226,7 +2657,6 @@ - @@ -3237,7 +2667,6 @@ - @@ -3248,7 +2677,6 @@ - @@ -3258,7 +2686,6 @@ - @@ -3268,7 +2695,6 @@ - @@ -3278,7 +2704,6 @@ - @@ -3287,7 +2712,6 @@ - @@ -3298,7 +2722,6 @@ - @@ -3308,7 +2731,6 @@ - @@ -3319,7 +2741,6 @@ - @@ -3329,7 +2750,6 @@ - @@ -3339,7 +2759,6 @@ - @@ -3348,16 +2767,6 @@ - - - - - - - - - - @@ -3370,7 +2779,6 @@ - @@ -3380,7 +2788,6 @@ - @@ -3391,7 +2798,6 @@ - @@ -3402,8 +2808,6 @@ - - @@ -3414,7 +2818,6 @@ - @@ -3424,9 +2827,6 @@ - - - @@ -3448,7 +2848,6 @@ - @@ -3458,11 +2857,8 @@ - - - @@ -3471,7 +2867,6 @@ - @@ -3491,7 +2886,6 @@ - @@ -3539,8 +2933,6 @@ - - @@ -3561,16 +2953,6 @@ - - - - - - - - - - @@ -3580,16 +2962,6 @@ - - - - - - - - - - @@ -3599,16 +2971,6 @@ - - - - - - - - - - @@ -3618,15 +2980,6 @@ - - - - - - - - - @@ -3639,7 +2992,6 @@ - @@ -3650,7 +3002,6 @@ - From b25a02d904bf8cd010fb400b4b0181361f077d83 Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Fri, 31 May 2024 10:20:07 -0600 Subject: [PATCH 15/19] fix subtree add --- .../git-fleximod/.github/workflows/pre-commit | 13 - .../.github/workflows/pytest.yaml | 77 -- .lib/git-fleximod/.pre-commit-config.yaml | 18 - .lib/git-fleximod/License | 20 - .lib/git-fleximod/README.md | 110 --- .lib/git-fleximod/doc/Makefile | 20 - .lib/git-fleximod/doc/conf.py | 26 - .lib/git-fleximod/doc/index.rst | 24 - .lib/git-fleximod/doc/make.bat | 35 - .lib/git-fleximod/escomp_install | 25 - .lib/git-fleximod/git_fleximod/__init__.py | 0 .lib/git-fleximod/git_fleximod/cli.py | 119 --- .../git-fleximod/git_fleximod/git_fleximod.py | 601 --------------- .../git-fleximod/git_fleximod/gitinterface.py | 79 -- .lib/git-fleximod/git_fleximod/gitmodules.py | 97 --- .../git-fleximod/git_fleximod/lstripreader.py | 43 -- .lib/git-fleximod/git_fleximod/metoflexi.py | 236 ------ .lib/git-fleximod/git_fleximod/utils.py | 365 --------- .lib/git-fleximod/poetry.lock | 693 ------------------ .lib/git-fleximod/pyproject.toml | 41 -- .lib/git-fleximod/tbump.toml | 43 -- .lib/git-fleximod/tests/__init__.py | 3 - .lib/git-fleximod/tests/conftest.py | 138 ---- .lib/git-fleximod/tests/test_a_import.py | 8 - .lib/git-fleximod/tests/test_b_update.py | 26 - .lib/git-fleximod/tests/test_c_required.py | 30 - .lib/git-fleximod/tests/test_d_complex.py | 67 -- 27 files changed, 2957 deletions(-) delete mode 100644 .lib/git-fleximod/.github/workflows/pre-commit delete mode 100644 .lib/git-fleximod/.github/workflows/pytest.yaml delete mode 100644 .lib/git-fleximod/.pre-commit-config.yaml delete mode 100644 .lib/git-fleximod/License delete mode 100644 .lib/git-fleximod/README.md delete mode 100644 .lib/git-fleximod/doc/Makefile delete mode 100644 .lib/git-fleximod/doc/conf.py delete mode 100644 .lib/git-fleximod/doc/index.rst delete mode 100644 .lib/git-fleximod/doc/make.bat delete mode 100644 .lib/git-fleximod/escomp_install delete mode 100644 .lib/git-fleximod/git_fleximod/__init__.py delete mode 100644 .lib/git-fleximod/git_fleximod/cli.py delete mode 100755 .lib/git-fleximod/git_fleximod/git_fleximod.py delete mode 100644 .lib/git-fleximod/git_fleximod/gitinterface.py delete mode 100644 .lib/git-fleximod/git_fleximod/gitmodules.py delete mode 100644 .lib/git-fleximod/git_fleximod/lstripreader.py delete mode 100755 .lib/git-fleximod/git_fleximod/metoflexi.py delete mode 100644 .lib/git-fleximod/git_fleximod/utils.py delete mode 100644 .lib/git-fleximod/poetry.lock delete mode 100644 .lib/git-fleximod/pyproject.toml delete mode 100644 .lib/git-fleximod/tbump.toml delete mode 100644 .lib/git-fleximod/tests/__init__.py delete mode 100644 .lib/git-fleximod/tests/conftest.py delete mode 100644 .lib/git-fleximod/tests/test_a_import.py delete mode 100644 .lib/git-fleximod/tests/test_b_update.py delete mode 100644 .lib/git-fleximod/tests/test_c_required.py delete mode 100644 .lib/git-fleximod/tests/test_d_complex.py diff --git a/.lib/git-fleximod/.github/workflows/pre-commit b/.lib/git-fleximod/.github/workflows/pre-commit deleted file mode 100644 index 1a6ad0082a..0000000000 --- a/.lib/git-fleximod/.github/workflows/pre-commit +++ /dev/null @@ -1,13 +0,0 @@ -name: pre-commit -on: - pull_request: - push: - branches: [main] - -jobs: - pre-commit: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v3 - - uses: actions/setup-python@v3 - - uses: pre-commit/action@v3.0.0 diff --git a/.lib/git-fleximod/.github/workflows/pytest.yaml b/.lib/git-fleximod/.github/workflows/pytest.yaml deleted file mode 100644 index 0868dd9a33..0000000000 --- a/.lib/git-fleximod/.github/workflows/pytest.yaml +++ /dev/null @@ -1,77 +0,0 @@ -# Run this job on pushes to `main`, and for pull requests. If you don't specify -# `branches: [main], then this actions runs _twice_ on pull requests, which is -# annoying. - -on: - push: - branches: [main] - pull_request: - branches: [main] - -jobs: - test: - runs-on: ubuntu-latest - steps: - - uses: actions/checkout@v4 - - # If you wanted to use multiple Python versions, you'd have specify a matrix in the job and - # reference the matrixe python version here. - - uses: actions/setup-python@v5 - with: - python-version: '3.9' - - # Cache the installation of Poetry itself, e.g. the next step. This prevents the workflow - # from installing Poetry every time, which can be slow. Note the use of the Poetry version - # number in the cache key, and the "-0" suffix: this allows you to invalidate the cache - # manually if/when you want to upgrade Poetry, or if something goes wrong. This could be - # mildly cleaner by using an environment variable, but I don't really care. - - name: cache poetry install - uses: actions/cache@v4 - with: - path: ~/.local - key: poetry-1.7.1 - - # Install Poetry. You could do this manually, or there are several actions that do this. - # `snok/install-poetry` seems to be minimal yet complete, and really just calls out to - # Poetry's default install script, which feels correct. I pin the Poetry version here - # because Poetry does occasionally change APIs between versions and I don't want my - # actions to break if it does. - # - # The key configuration value here is `virtualenvs-in-project: true`: this creates the - # venv as a `.venv` in your testing directory, which allows the next step to easily - # cache it. - - uses: snok/install-poetry@v1 - with: - version: 1.7.1 - virtualenvs-create: true - virtualenvs-in-project: true - - # Cache your dependencies (i.e. all the stuff in your `pyproject.toml`). Note the cache - # key: if you're using multiple Python versions, or multiple OSes, you'd need to include - # them in the cache key. I'm not, so it can be simple and just depend on the poetry.lock. - - name: cache deps - id: cache-deps - uses: actions/cache@v4 - with: - path: .venv - key: pydeps-${{ hashFiles('**/poetry.lock') }} - - # Install dependencies. `--no-root` means "install all dependencies but not the project - # itself", which is what you want to avoid caching _your_ code. The `if` statement - # ensures this only runs on a cache miss. - - run: poetry install --no-interaction --no-root - if: steps.cache-deps.outputs.cache-hit != 'true' - - # Now install _your_ project. This isn't necessary for many types of projects -- particularly - # things like Django apps don't need this. But it's a good idea since it fully-exercises the - # pyproject.toml and makes that if you add things like console-scripts at some point that - # they'll be installed and working. - - run: poetry install --no-interaction - - # And finally run tests. I'm using pytest and all my pytest config is in my `pyproject.toml` - # so this line is super-simple. But it could be as complex as you need. - - run: | - git config --global user.name "${GITHUB_ACTOR}" - git config --global user.email "${GITHUB_ACTOR_ID}+${GITHUB_ACTOR}@users.noreply.github.com" - poetry run pytest - diff --git a/.lib/git-fleximod/.pre-commit-config.yaml b/.lib/git-fleximod/.pre-commit-config.yaml deleted file mode 100644 index 2f6089da72..0000000000 --- a/.lib/git-fleximod/.pre-commit-config.yaml +++ /dev/null @@ -1,18 +0,0 @@ -exclude: ^utils/.*$ - -repos: - - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.0.1 - hooks: - - id: end-of-file-fixer - - id: trailing-whitespace - - repo: https://github.com/psf/black - rev: 22.3.0 - hooks: - - id: black - - repo: https://github.com/PyCQA/pylint - rev: v2.11.1 - hooks: - - id: pylint - args: - - --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement,logging-format-interpolation,no-name-in-module,arguments-renamed,unspecified-encoding,protected-access,import-error,no-member diff --git a/.lib/git-fleximod/License b/.lib/git-fleximod/License deleted file mode 100644 index 2c6fe768c2..0000000000 --- a/.lib/git-fleximod/License +++ /dev/null @@ -1,20 +0,0 @@ -Copyright 2024 National Center for Atmospheric Sciences (NCAR) - -Permission is hereby granted, free of charge, to any person obtaining -a copy of this software and associated documentation files (the -“Softwareâ€), to deal in the Software without restriction, including -without limitation the rights to use, copy, modify, merge, publish, -distribute, sublicense, and/or sell copies of the Software, and to -permit persons to whom the Software is furnished to do so, subject to -the following conditions: - -The above copyright notice and this permission notice shall be -included in all copies or substantial portions of the Software. - -THE SOFTWARE IS PROVIDED “AS ISâ€, WITHOUT WARRANTY OF ANY KIND, -EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF -MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND -NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE -LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION -OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION -WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/.lib/git-fleximod/README.md b/.lib/git-fleximod/README.md deleted file mode 100644 index d1ef632f28..0000000000 --- a/.lib/git-fleximod/README.md +++ /dev/null @@ -1,110 +0,0 @@ -# git-fleximod - -Flexible, Enhanced Submodule Management for Git - -## Overview - -Git-fleximod is a Python-based tool that extends Git's submodule and sparse checkout capabilities, offering additional features for managing submodules in a more flexible and efficient way. - -## Installation - -#TODO Install using pip: -# pip install git-fleximod - If you choose to locate git-fleximod in your path you can access it via command: git fleximod - -## Usage - - Basic Usage: - git fleximod [options] - Available Commands: - status: Display the status of submodules. - update: Update submodules to the tag indicated in .gitmodules variable fxtag. - test: Make sure that fxtags and submodule hashes are consistant, - make sure that official urls (as defined by fxDONOTUSEurl) are set - make sure that fxtags are defined for all submodules - Additional Options: - See git fleximod --help for more details. - -## Supported .gitmodules Variables - - fxtag: Specify a specific tag or branch to checkout for a submodule. - fxrequired: Mark a submodule's checkout behavior, with allowed values: - - ToplevelRequired: Top-level and required (checked out only when this is the Toplevel module). - - ToplevelOptional: Top-level and optional (checked out with --optional flag if this is the Toplevel module). - - AlwaysRequired: Always required (always checked out). - - AlwaysOptional: Always optional (checked out with --optional flag). - fxsparse: Enable sparse checkout for a submodule, pointing to a file containing sparse checkout paths. - fxDONOTUSEurl: This is the url used in the test subcommand to assure that protected branches do not point to forks - **NOTE** the fxDONOTUSEurl variable is only used to identify the official project repository and should not be - changed by users. Use the url variable to change to a fork if desired. - -## Sparse Checkouts - - To enable sparse checkout for a submodule, set the fxsparse variable - in the .gitmodules file to the path of a file containing the desired - sparse checkout paths. Git-fleximod will automatically configure - sparse checkout based on this file when applicable commands are run. - See [git-sparse-checkout](https://git-scm.com/docs/git-sparse-checkout#_internalsfull_pattern_set) - for details on the format of this file. - -## Tests - - The git fleximod test action is designed to be used by, for example, github workflows - to assure that protected branches are consistant with respect to submodule hashes and fleximod fxtags - -## Examples - -Here are some common usage examples: - -Update all submodules, including optional ones: -```bash - git fleximod update --optional -``` - -Updating a specific submodule to the fxtag indicated in .gitmodules: - -```bash - git fleximod update submodule-name -``` -Example .gitmodules entry: -```ini, toml - [submodule "cosp2"] - path = src/physics/cosp2/src - url = https://github.com/CFMIP/COSPv2.0 - fxsparse = ../.cosp_sparse_checkout - fxrequired = AlwaysRequired - fxtag = v2.1.4cesm -``` -Explanation: - -This entry indicates that the submodule named cosp2 at tag v2.1.4cesm -should be checked out into the directory src/physics/cosp2/src -relative to the .gitmodules directory. It should be checked out from -the URL https://github.com/CFMIP/COSPv2.0 and use sparse checkout as -described in the file ../.cosp_sparse_checkout relative to the path -directory. It should be checked out anytime this .gitmodules entry is -read. - -Additional example: -```ini, toml - [submodule "cime"] - path = cime - url = https://github.com/jedwards4b/cime - fxrequired = ToplevelRequired - fxtag = cime6.0.198_rme01 -``` - -Explanation: - -This entry indicates that the submodule cime should be checked out -into a directory named cime at tag cime6.0.198_rme01 from the URL -https://github.com/jedwards4b/cime. This should only be done if -the .gitmodules file is at the top level of the repository clone. - -## Contributing - -We welcome contributions! Please see the CONTRIBUTING.md file for guidelines. - -## License - -Git-fleximod is released under the MIT License. diff --git a/.lib/git-fleximod/doc/Makefile b/.lib/git-fleximod/doc/Makefile deleted file mode 100644 index d4bb2cbb9e..0000000000 --- a/.lib/git-fleximod/doc/Makefile +++ /dev/null @@ -1,20 +0,0 @@ -# Minimal makefile for Sphinx documentation -# - -# You can set these variables from the command line, and also -# from the environment for the first two. -SPHINXOPTS ?= -SPHINXBUILD ?= sphinx-build -SOURCEDIR = . -BUILDDIR = _build - -# Put it first so that "make" without argument is like "make help". -help: - @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) - -.PHONY: help Makefile - -# Catch-all target: route all unknown targets to Sphinx using the new -# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). -%: Makefile - @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/.lib/git-fleximod/doc/conf.py b/.lib/git-fleximod/doc/conf.py deleted file mode 100644 index 423099eec9..0000000000 --- a/.lib/git-fleximod/doc/conf.py +++ /dev/null @@ -1,26 +0,0 @@ -# Configuration file for the Sphinx documentation builder. -# -# For the full list of built-in configuration values, see the documentation: -# https://www.sphinx-doc.org/en/master/usage/configuration.html - -# -- Project information ----------------------------------------------------- -# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information - -project = "git-fleximod" -author = "Jim Edwards " -release = "0.4.0" - -# -- General configuration --------------------------------------------------- -# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration - -extensions = ["sphinx_argparse_cli"] - -templates_path = ["_templates"] -exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] - - -# -- Options for HTML output ------------------------------------------------- -# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output - -html_theme = "alabaster" -html_static_path = ["_static"] diff --git a/.lib/git-fleximod/doc/index.rst b/.lib/git-fleximod/doc/index.rst deleted file mode 100644 index 0f9c1a7f7e..0000000000 --- a/.lib/git-fleximod/doc/index.rst +++ /dev/null @@ -1,24 +0,0 @@ -.. git-fleximod documentation master file, created by - sphinx-quickstart on Sat Feb 3 12:02:22 2024. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to git-fleximod's documentation! -======================================== - -.. toctree:: - :maxdepth: 2 - :caption: Contents: -.. module:: sphinxcontrib.autoprogram -.. sphinx_argparse_cli:: - :module: git_fleximod.cli - :func: get_parser - :prog: git-fleximod - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` diff --git a/.lib/git-fleximod/doc/make.bat b/.lib/git-fleximod/doc/make.bat deleted file mode 100644 index 32bb24529f..0000000000 --- a/.lib/git-fleximod/doc/make.bat +++ /dev/null @@ -1,35 +0,0 @@ -@ECHO OFF - -pushd %~dp0 - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set SOURCEDIR=. -set BUILDDIR=_build - -%SPHINXBUILD% >NUL 2>NUL -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.https://www.sphinx-doc.org/ - exit /b 1 -) - -if "%1" == "" goto help - -%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% -goto end - -:help -%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% - -:end -popd diff --git a/.lib/git-fleximod/escomp_install b/.lib/git-fleximod/escomp_install deleted file mode 100644 index ae782e72a4..0000000000 --- a/.lib/git-fleximod/escomp_install +++ /dev/null @@ -1,25 +0,0 @@ -#!/usr/bin/env python -# updates git-fleximod in an ESCOMP model -# this script should be run from the model root directory, it expects -# git-fleximod to already be installed with the script in bin -# and the classes in lib/python/site-packages -import sys -import shutil -import os - -from glob import iglob - -fleximod_root = sys.argv[1] -fleximod_path = os.path.join(fleximod_root,"src","git-fleximod") -if os.path.isfile(fleximod_path): - with open(fleximod_path,"r") as f: - fleximod = f.readlines() - with open(os.path.join(".","bin","git-fleximod"),"w") as f: - for line in fleximod: - f.write(line) - if "import argparse" in line: - f.write('\nsys.path.append(os.path.join(os.path.dirname(__file__),"..","lib","python","site-packages"))\n\n') - - for file in iglob(os.path.join(fleximod_root, "src", "fleximod", "*.py")): - shutil.copy(file, - os.path.join("lib","python","site-packages","fleximod",os.path.basename(file))) diff --git a/.lib/git-fleximod/git_fleximod/__init__.py b/.lib/git-fleximod/git_fleximod/__init__.py deleted file mode 100644 index e69de29bb2..0000000000 diff --git a/.lib/git-fleximod/git_fleximod/cli.py b/.lib/git-fleximod/git_fleximod/cli.py deleted file mode 100644 index 1fb959dad0..0000000000 --- a/.lib/git-fleximod/git_fleximod/cli.py +++ /dev/null @@ -1,119 +0,0 @@ -from pathlib import Path -import argparse - -__version__ = "0.7.4" - -def find_root_dir(filename=".git"): - d = Path.cwd() - root = Path(d.root) - while d != root: - attempt = d / filename - if attempt.is_dir(): - return attempt - d = d.parent - return None - - -def get_parser(): - description = """ - %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models - """ - parser = argparse.ArgumentParser( - description=description, formatter_class=argparse.RawDescriptionHelpFormatter - ) - - # - # user options - # - choices = ["update", "status", "test"] - parser.add_argument( - "action", - choices=choices, - default="update", - help=f"Subcommand of git-fleximod, choices are {choices[:-1]}", - ) - - parser.add_argument( - "components", - nargs="*", - help="Specific component(s) to checkout. By default, " - "all required submodules are checked out.", - ) - - parser.add_argument( - "-C", - "--path", - default=find_root_dir(), - help="Toplevel repository directory. Defaults to top git directory relative to current.", - ) - - parser.add_argument( - "-g", - "--gitmodules", - nargs="?", - default=".gitmodules", - help="The submodule description filename. " "Default: %(default)s.", - ) - - parser.add_argument( - "-x", - "--exclude", - nargs="*", - help="Component(s) listed in the gitmodules file which should be ignored.", - ) - parser.add_argument( - "-f", - "--force", - action="store_true", - default=False, - help="Override cautions and update or checkout over locally modified repository.", - ) - - parser.add_argument( - "-o", - "--optional", - action="store_true", - default=False, - help="By default only the required submodules " - "are checked out. This flag will also checkout the " - "optional submodules relative to the toplevel directory.", - ) - - parser.add_argument( - "-v", - "--verbose", - action="count", - default=0, - help="Output additional information to " - "the screen and log file. This flag can be " - "used up to two times, increasing the " - "verbosity level each time.", - ) - - parser.add_argument( - "-V", - "--version", - action="version", - version=f"%(prog)s {__version__}", - help="Print version and exit.", - ) - - # - # developer options - # - parser.add_argument( - "--backtrace", - action="store_true", - help="DEVELOPER: show exception backtraces as extra " "debugging output", - ) - - parser.add_argument( - "-d", - "--debug", - action="store_true", - default=False, - help="DEVELOPER: output additional debugging " - "information to the screen and log file.", - ) - - return parser diff --git a/.lib/git-fleximod/git_fleximod/git_fleximod.py b/.lib/git-fleximod/git_fleximod/git_fleximod.py deleted file mode 100755 index 103cc82a50..0000000000 --- a/.lib/git-fleximod/git_fleximod/git_fleximod.py +++ /dev/null @@ -1,601 +0,0 @@ -#!/usr/bin/env python -import sys - -MIN_PYTHON = (3, 7) -if sys.version_info < MIN_PYTHON: - sys.exit("Python %s.%s or later is required." % MIN_PYTHON) - -import os -import shutil -import logging -import textwrap -from git_fleximod import utils -from git_fleximod import cli -from git_fleximod.gitinterface import GitInterface -from git_fleximod.gitmodules import GitModules -from configparser import NoOptionError - -# logger variable is global -logger = None - - -def fxrequired_allowed_values(): - return ["ToplevelRequired", "ToplevelOptional", "AlwaysRequired", "AlwaysOptional"] - - -def commandline_arguments(args=None): - parser = cli.get_parser() - - if args: - options = parser.parse_args(args) - else: - options = parser.parse_args() - - # explicitly listing a component overrides the optional flag - if options.optional or options.components: - fxrequired = [ - "ToplevelRequired", - "ToplevelOptional", - "AlwaysRequired", - "AlwaysOptional", - ] - else: - fxrequired = ["ToplevelRequired", "AlwaysRequired"] - - action = options.action - if not action: - action = "update" - handlers = [logging.StreamHandler()] - - if options.debug: - try: - open("fleximod.log", "w") - except PermissionError: - sys.exit("ABORT: Could not write file fleximod.log") - level = logging.DEBUG - handlers.append(logging.FileHandler("fleximod.log")) - elif options.verbose: - level = logging.INFO - else: - level = logging.WARNING - # Configure the root logger - logging.basicConfig( - level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers - ) - - if hasattr(options, "version"): - exit() - - return ( - options.path, - options.gitmodules, - fxrequired, - options.components, - options.exclude, - options.force, - action, - ) - - -def submodule_sparse_checkout(root_dir, name, url, path, sparsefile, tag="master"): - """ - This function performs a sparse checkout of a git submodule. It does so by first creating the .git/info/sparse-checkout fileq - in the submodule and then checking out the desired tag. If the submodule is already checked out, it will not be checked out again. - Creating the sparse-checkout file first prevents the entire submodule from being checked out and then removed. This is important - because the submodule may have a large number of files and checking out the entire submodule and then removing it would be time - and disk space consuming. - - Parameters: - root_dir (str): The root directory for the git operation. - name (str): The name of the submodule. - url (str): The URL of the submodule. - path (str): The path to the submodule. - sparsefile (str): The sparse file for the submodule. - tag (str, optional): The tag to checkout. Defaults to "master". - - Returns: - None - """ - logger.info("Called sparse_checkout for {}".format(name)) - rgit = GitInterface(root_dir, logger) - superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") - if superroot: - gitroot = superroot.strip() - else: - gitroot = root_dir.strip() - assert os.path.isdir(os.path.join(gitroot, ".git")) - # first create the module directory - if not os.path.isdir(os.path.join(root_dir, path)): - os.makedirs(os.path.join(root_dir, path)) - - # initialize a new git repo and set the sparse checkout flag - sprep_repo = os.path.join(root_dir, path) - sprepo_git = GitInterface(sprep_repo, logger) - if os.path.exists(os.path.join(sprep_repo, ".git")): - try: - logger.info("Submodule {} found".format(name)) - chk = sprepo_git.config_get_value("core", "sparseCheckout") - if chk == "true": - logger.info("Sparse submodule {} already checked out".format(name)) - return - except NoOptionError: - logger.debug("Sparse submodule {} not present".format(name)) - except Exception as e: - utils.fatal_error("Unexpected error {} occured.".format(e)) - - sprepo_git.config_set_value("core", "sparseCheckout", "true") - - # set the repository remote - - logger.info("Setting remote origin in {}/{}".format(root_dir, path)) - status = sprepo_git.git_operation("remote", "-v") - if url not in status: - sprepo_git.git_operation("remote", "add", "origin", url) - - topgit = os.path.join(gitroot, ".git") - - if gitroot != root_dir and os.path.isfile(os.path.join(root_dir, ".git")): - with open(os.path.join(root_dir, ".git")) as f: - gitpath = os.path.relpath( - os.path.join(root_dir, f.read().split()[1]), - start=os.path.join(root_dir, path), - ) - topgit = os.path.join(gitpath, "modules") - else: - topgit = os.path.relpath( - os.path.join(root_dir, ".git", "modules"), - start=os.path.join(root_dir, path), - ) - - with utils.pushd(sprep_repo): - if not os.path.isdir(topgit): - os.makedirs(topgit) - topgit += os.sep + name - - if os.path.isdir(os.path.join(root_dir, path, ".git")): - with utils.pushd(sprep_repo): - shutil.move(".git", topgit) - with open(".git", "w") as f: - f.write("gitdir: " + os.path.relpath(topgit)) - # assert(os.path.isdir(os.path.relpath(topgit, start=sprep_repo))) - gitsparse = os.path.abspath(os.path.join(topgit, "info", "sparse-checkout")) - if os.path.isfile(gitsparse): - logger.warning( - "submodule {} is already initialized {}".format(name, topgit) - ) - return - - with utils.pushd(sprep_repo): - shutil.copy(sparsefile, gitsparse) - - # Finally checkout the repo - sprepo_git.git_operation("fetch", "origin", "--tags") - sprepo_git.git_operation("checkout", tag) - - print(f"Successfully checked out {name:>20} at {tag}") - rgit.config_set_value(f'submodule "{name}"', "active", "true") - rgit.config_set_value(f'submodule "{name}"', "url", url) - - -def single_submodule_checkout( - root, name, path, url=None, tag=None, force=False, optional=False -): - """ - This function checks out a single git submodule. - - Parameters: - root (str): The root directory for the git operation. - name (str): The name of the submodule. - path (str): The path to the submodule. - url (str, optional): The URL of the submodule. Defaults to None. - tag (str, optional): The tag to checkout. Defaults to None. - force (bool, optional): If set to True, forces the checkout operation. Defaults to False. - optional (bool, optional): If set to True, the submodule is considered optional. Defaults to False. - - Returns: - None - """ - # function implementation... - git = GitInterface(root, logger) - repodir = os.path.join(root, path) - logger.info("Checkout {} into {}/{}".format(name, root, path)) - # if url is provided update to the new url - tmpurl = None - repo_exists = False - if os.path.exists(os.path.join(repodir, ".git")): - logger.info("Submodule {} already checked out".format(name)) - repo_exists = True - # Look for a .gitmodules file in the newly checkedout repo - if not repo_exists and url: - # ssh urls cause problems for those who dont have git accounts with ssh keys defined - # but cime has one since e3sm prefers ssh to https, because the .gitmodules file was - # opened with a GitModules object we don't need to worry about restoring the file here - # it will be done by the GitModules class - if url.startswith("git@"): - tmpurl = url - url = url.replace("git@github.com:", "https://github.com/") - git.git_operation("clone", url, path) - smgit = GitInterface(repodir, logger) - if not tag: - tag = smgit.git_operation("describe", "--tags", "--always").rstrip() - smgit.git_operation("checkout", tag) - # Now need to move the .git dir to the submodule location - rootdotgit = os.path.join(root, ".git") - if os.path.isfile(rootdotgit): - with open(rootdotgit) as f: - line = f.readline() - if line.startswith("gitdir: "): - rootdotgit = line[8:].rstrip() - - newpath = os.path.abspath(os.path.join(root, rootdotgit, "modules", name)) - if os.path.exists(newpath): - shutil.rmtree(os.path.join(repodir, ".git")) - else: - shutil.move(os.path.join(repodir, ".git"), newpath) - - with open(os.path.join(repodir, ".git"), "w") as f: - f.write("gitdir: " + os.path.relpath(newpath, start=repodir)) - - if not os.path.exists(repodir): - parent = os.path.dirname(repodir) - if not os.path.isdir(parent): - os.makedirs(parent) - git.git_operation("submodule", "add", "--name", name, "--", url, path) - - if not repo_exists or not tmpurl: - git.git_operation("submodule", "update", "--init", "--", path) - - if os.path.exists(os.path.join(repodir, ".gitmodules")): - # recursively handle this checkout - print(f"Recursively checking out submodules of {name}") - gitmodules = GitModules(logger, confpath=repodir) - requiredlist = ["AlwaysRequired"] - if optional: - requiredlist.append("AlwaysOptional") - submodules_checkout(gitmodules, repodir, requiredlist, force=force) - if not os.path.exists(os.path.join(repodir, ".git")): - utils.fatal_error( - f"Failed to checkout {name} {repo_exists} {tmpurl} {repodir} {path}" - ) - - if tmpurl: - print(git.git_operation("restore", ".gitmodules")) - - return - - -def submodules_status(gitmodules, root_dir, toplevel=False): - testfails = 0 - localmods = 0 - needsupdate = 0 - for name in gitmodules.sections(): - path = gitmodules.get(name, "path") - tag = gitmodules.get(name, "fxtag") - required = gitmodules.get(name, "fxrequired") - level = required and "Toplevel" in required - if not path: - utils.fatal_error("No path found in .gitmodules for {}".format(name)) - newpath = os.path.join(root_dir, path) - logger.debug("newpath is {}".format(newpath)) - if not os.path.exists(os.path.join(newpath, ".git")): - rootgit = GitInterface(root_dir, logger) - # submodule commands use path, not name - url = gitmodules.get(name, "url") - url = url.replace("git@github.com:", "https://github.com/") - tags = rootgit.git_operation("ls-remote", "--tags", url) - atag = None - needsupdate += 1 - if not toplevel and level: - continue - for htag in tags.split("\n"): - if tag and tag in htag: - atag = (htag.split()[1])[10:] - break - if tag and tag == atag: - print(f"e {name:>20} not checked out, aligned at tag {tag}") - elif tag: - ahash = rootgit.git_operation( - "submodule", "status", "{}".format(path) - ).rstrip() - ahash = ahash[1 : len(tag) + 1] - if tag == ahash: - print(f"e {name:>20} not checked out, aligned at hash {ahash}") - else: - print( - f"e {name:>20} not checked out, out of sync at tag {atag}, expected tag is {tag}" - ) - testfails += 1 - else: - print(f"e {name:>20} has no fxtag defined in .gitmodules") - testfails += 1 - else: - with utils.pushd(newpath): - git = GitInterface(newpath, logger) - atag = git.git_operation("describe", "--tags", "--always").rstrip() - ahash = git.git_operation("status").partition("\n")[0].split()[-1] - if tag and atag == tag: - print(f" {name:>20} at tag {tag}") - elif tag and ahash[: len(tag)] == tag: - print(f" {name:>20} at hash {ahash}") - elif atag == ahash: - print(f" {name:>20} at hash {ahash}") - elif tag: - print( - f"s {name:>20} {atag} {ahash} is out of sync with .gitmodules {tag}" - ) - testfails += 1 - needsupdate += 1 - else: - print( - f"e {name:>20} has no fxtag defined in .gitmodules, module at {atag}" - ) - testfails += 1 - - status = git.git_operation("status", "--ignore-submodules") - if "nothing to commit" not in status: - localmods = localmods + 1 - print("M" + textwrap.indent(status, " ")) - - return testfails, localmods, needsupdate - - -def submodules_update(gitmodules, root_dir, requiredlist, force): - _, localmods, needsupdate = submodules_status(gitmodules, root_dir) - - if localmods and not force: - local_mods_output() - return - if needsupdate == 0: - return - - for name in gitmodules.sections(): - fxtag = gitmodules.get(name, "fxtag") - path = gitmodules.get(name, "path") - url = gitmodules.get(name, "url") - logger.info( - "name={} path={} url={} fxtag={} requiredlist={}".format( - name, os.path.join(root_dir, path), url, fxtag, requiredlist - ) - ) - # if not os.path.exists(os.path.join(root_dir,path, ".git")): - fxrequired = gitmodules.get(name, "fxrequired") - assert fxrequired in fxrequired_allowed_values() - rgit = GitInterface(root_dir, logger) - superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") - - fxsparse = gitmodules.get(name, "fxsparse") - - if ( - fxrequired - and (superroot and "Toplevel" in fxrequired) - or fxrequired not in requiredlist - ): - if "ToplevelOptional" == fxrequired: - print("Skipping optional component {}".format(name)) - continue - if fxsparse: - logger.debug( - "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( - root_dir, name, url, path, fxsparse, fxtag - ) - ) - submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) - else: - logger.info( - "Calling submodule_checkout({},{},{},{})".format( - root_dir, name, path, url - ) - ) - - single_submodule_checkout( - root_dir, - name, - path, - url=url, - tag=fxtag, - force=force, - optional=("AlwaysOptional" in requiredlist), - ) - - if os.path.exists(os.path.join(path, ".git")): - submoddir = os.path.join(root_dir, path) - with utils.pushd(submoddir): - git = GitInterface(submoddir, logger) - # first make sure the url is correct - upstream = git.git_operation("ls-remote", "--get-url").rstrip() - newremote = "origin" - if upstream != url: - # TODO - this needs to be a unique name - remotes = git.git_operation("remote", "-v") - if url in remotes: - for line in remotes: - if url in line and "fetch" in line: - newremote = line.split()[0] - break - else: - i = 0 - while newremote in remotes: - i = i + 1 - newremote = f"newremote.{i:02d}" - git.git_operation("remote", "add", newremote, url) - - tags = git.git_operation("tag", "-l") - if fxtag and fxtag not in tags: - git.git_operation("fetch", newremote, "--tags") - atag = git.git_operation("describe", "--tags", "--always").rstrip() - if fxtag and fxtag != atag: - try: - git.git_operation("checkout", fxtag) - print(f"{name:>20} updated to {fxtag}") - except Exception as error: - print(error) - elif not fxtag: - print(f"No fxtag found for submodule {name:>20}") - else: - print(f"{name:>20} up to date.") - - -def local_mods_output(): - text = """\ - The submodules labeled with 'M' above are not in a clean state. - The following are options for how to proceed: - (1) Go into each submodule which is not in a clean state and issue a 'git status' - Either revert or commit your changes so that the submodule is in a clean state. - (2) use the --force option to git-fleximod - (3) you can name the particular submodules to update using the git-fleximod command line - (4) As a last resort you can remove the submodule (via 'rm -fr [directory]') - then rerun git-fleximod update. -""" - print(text) - - -# checkout is done by update if required so this function may be depricated -def submodules_checkout(gitmodules, root_dir, requiredlist, force=False): - """ - This function checks out all git submodules based on the provided parameters. - - Parameters: - gitmodules (ConfigParser): The gitmodules configuration. - root_dir (str): The root directory for the git operation. - requiredlist (list): The list of required modules. - force (bool, optional): If set to True, forces the checkout operation. Defaults to False. - - Returns: - None - """ - # function implementation... - print("") - _, localmods, needsupdate = submodules_status(gitmodules, root_dir) - if localmods and not force: - local_mods_output() - return - if not needsupdate: - return - for name in gitmodules.sections(): - fxrequired = gitmodules.get(name, "fxrequired") - fxsparse = gitmodules.get(name, "fxsparse") - fxtag = gitmodules.get(name, "fxtag") - path = gitmodules.get(name, "path") - url = gitmodules.get(name, "url") - if fxrequired and fxrequired not in requiredlist: - if "Optional" in fxrequired: - print("Skipping optional component {}".format(name)) - continue - - if fxsparse: - logger.debug( - "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( - root_dir, name, url, path, fxsparse, fxtag - ) - ) - submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) - else: - logger.debug( - "Calling submodule_checkout({},{},{})".format(root_dir, name, path) - ) - single_submodule_checkout( - root_dir, - name, - path, - url=url, - tag=fxtag, - force=force, - optional="AlwaysOptional" in requiredlist, - ) - - -def submodules_test(gitmodules, root_dir): - """ - This function tests the git submodules based on the provided parameters. - - It first checks that fxtags are present and in sync with submodule hashes. - Then it ensures that urls are consistent with fxurls (not forks and not ssh) - and that sparse checkout files exist. - - Parameters: - gitmodules (ConfigParser): The gitmodules configuration. - root_dir (str): The root directory for the git operation. - - Returns: - int: The number of test failures. - """ - # First check that fxtags are present and in sync with submodule hashes - testfails, localmods, needsupdate = submodules_status(gitmodules, root_dir) - print("") - # Then make sure that urls are consistant with fxurls (not forks and not ssh) - # and that sparse checkout files exist - for name in gitmodules.sections(): - url = gitmodules.get(name, "url") - fxurl = gitmodules.get(name, "fxDONOTMODIFYurl") - fxsparse = gitmodules.get(name, "fxsparse") - path = gitmodules.get(name, "path") - fxurl = fxurl[:-4] if fxurl.endswith(".git") else fxurl - url = url[:-4] if url.endswith(".git") else url - if not fxurl or url.lower() != fxurl.lower(): - print(f"{name:>20} url {url} not in sync with required {fxurl}") - testfails += 1 - if fxsparse and not os.path.isfile(os.path.join(root_dir, path, fxsparse)): - print(f"{name:>20} sparse checkout file {fxsparse} not found") - testfails += 1 - return testfails + localmods + needsupdate - - -def main(): - ( - root_dir, - file_name, - fxrequired, - includelist, - excludelist, - force, - action, - ) = commandline_arguments() - # Get a logger for the package - global logger - logger = logging.getLogger(__name__) - - logger.info("action is {}".format(action)) - - if not os.path.isfile(os.path.join(root_dir, file_name)): - file_path = utils.find_upwards(root_dir, file_name) - - if file_path is None: - utils.fatal_error( - "No {} found in {} or any of it's parents".format(file_name, root_dir) - ) - - root_dir = os.path.dirname(file_path) - logger.info( - "root_dir is {} includelist={} excludelist={}".format( - root_dir, includelist, excludelist - ) - ) - gitmodules = GitModules( - logger, - confpath=root_dir, - conffile=file_name, - includelist=includelist, - excludelist=excludelist, - ) - if not gitmodules.sections(): - sys.exit("No submodule components found") - retval = 0 - if action == "update": - submodules_update(gitmodules, root_dir, fxrequired, force) - elif action == "status": - tfails, lmods, updates = submodules_status(gitmodules, root_dir, toplevel=True) - if tfails + lmods + updates > 0: - print( - f" testfails = {tfails}, local mods = {lmods}, needs updates {updates}\n" - ) - if lmods > 0: - local_mods_output() - elif action == "test": - retval = submodules_test(gitmodules, root_dir) - else: - utils.fatal_error(f"unrecognized action request {action}") - return retval - - -if __name__ == "__main__": - sys.exit(main()) diff --git a/.lib/git-fleximod/git_fleximod/gitinterface.py b/.lib/git-fleximod/git_fleximod/gitinterface.py deleted file mode 100644 index 93ae38ecde..0000000000 --- a/.lib/git-fleximod/git_fleximod/gitinterface.py +++ /dev/null @@ -1,79 +0,0 @@ -import os -import sys -from . import utils -from pathlib import Path - -class GitInterface: - def __init__(self, repo_path, logger): - logger.debug("Initialize GitInterface for {}".format(repo_path)) - if isinstance(repo_path, str): - self.repo_path = Path(repo_path).resolve() - elif isinstance(repo_path, Path): - self.repo_path = repo_path.resolve() - else: - raise TypeError("repo_path must be a str or Path object") - self.logger = logger - try: - import git - - self._use_module = True - try: - self.repo = git.Repo(str(self.repo_path)) # Initialize GitPython repo - except git.exc.InvalidGitRepositoryError: - self.git = git - self._init_git_repo() - msg = "Using GitPython interface to git" - except ImportError: - self._use_module = False - if not (self.repo_path / ".git").exists(): - self._init_git_repo() - msg = "Using shell interface to git" - self.logger.info(msg) - - def _git_command(self, operation, *args): - self.logger.info(operation) - if self._use_module and operation != "submodule": - try: - return getattr(self.repo.git, operation)(*args) - except Exception as e: - sys.exit(e) - else: - return ["git", "-C", str(self.repo_path), operation] + list(args) - - def _init_git_repo(self): - if self._use_module: - self.repo = self.git.Repo.init(str(self.repo_path)) - else: - command = ("git", "-C", str(self.repo_path), "init") - utils.execute_subprocess(command) - - # pylint: disable=unused-argument - def git_operation(self, operation, *args, **kwargs): - command = self._git_command(operation, *args) - self.logger.info(command) - if isinstance(command, list): - try: - return utils.execute_subprocess(command, output_to_caller=True) - except Exception as e: - sys.exit(e) - else: - return command - - def config_get_value(self, section, name): - if self._use_module: - config = self.repo.config_reader() - return config.get_value(section, name) - else: - cmd = ("git", "-C", str(self.repo_path), "config", "--get", f"{section}.{name}") - output = utils.execute_subprocess(cmd, output_to_caller=True) - return output.strip() - - def config_set_value(self, section, name, value): - if self._use_module: - with self.repo.config_writer() as writer: - writer.set_value(section, name, value) - writer.release() # Ensure changes are saved - else: - cmd = ("git", "-C", str(self.repo_path), "config", f"{section}.{name}", value) - self.logger.info(cmd) - utils.execute_subprocess(cmd, output_to_caller=True) diff --git a/.lib/git-fleximod/git_fleximod/gitmodules.py b/.lib/git-fleximod/git_fleximod/gitmodules.py deleted file mode 100644 index 68c82d066f..0000000000 --- a/.lib/git-fleximod/git_fleximod/gitmodules.py +++ /dev/null @@ -1,97 +0,0 @@ -import shutil -from pathlib import Path -from configparser import RawConfigParser, ConfigParser -from .lstripreader import LstripReader - - -class GitModules(RawConfigParser): - def __init__( - self, - logger, - confpath=Path.cwd(), - conffile=".gitmodules", - includelist=None, - excludelist=None, - ): - """ - confpath: Path to the directory containing the .gitmodules file (defaults to the current working directory). - conffile: Name of the configuration file (defaults to .gitmodules). - includelist: Optional list of submodules to include. - excludelist: Optional list of submodules to exclude. - """ - self.logger = logger - self.logger.debug( - "Creating a GitModules object {} {} {} {}".format( - confpath, conffile, includelist, excludelist - ) - ) - super().__init__() - self.conf_file = (Path(confpath) / Path(conffile)) - if self.conf_file.exists(): - self.read_file(LstripReader(str(self.conf_file)), source=conffile) - self.includelist = includelist - self.excludelist = excludelist - self.isdirty = False - - def reload(self): - self.clear() - if self.conf_file.exists(): - self.read_file(LstripReader(str(self.conf_file)), source=self.conf_file) - - - def set(self, name, option, value): - """ - Sets a configuration value for a specific submodule: - Ensures the appropriate section exists for the submodule. - Calls the parent class's set method to store the value. - """ - self.isdirty = True - self.logger.debug("set called {} {} {}".format(name, option, value)) - section = f'submodule "{name}"' - if not self.has_section(section): - self.add_section(section) - super().set(section, option, str(value)) - - # pylint: disable=redefined-builtin, arguments-differ - def get(self, name, option, raw=False, vars=None, fallback=None): - """ - Retrieves a configuration value for a specific submodule: - Uses the parent class's get method to access the value. - Handles potential errors if the section or option doesn't exist. - """ - self.logger.debug("get called {} {}".format(name, option)) - section = f'submodule "{name}"' - try: - return ConfigParser.get( - self, section, option, raw=raw, vars=vars, fallback=fallback - ) - except ConfigParser.NoOptionError: - return None - - def save(self): - if self.isdirty: - self.logger.info("Writing {}".format(self.conf_file)) - with open(self.conf_file, "w") as fd: - self.write(fd) - self.isdirty = False - - def __del__(self): - self.save() - - def sections(self): - """Strip the submodule part out of section and just use the name""" - self.logger.debug("calling GitModules sections iterator") - names = [] - for section in ConfigParser.sections(self): - name = section[11:-1] - if self.includelist and name not in self.includelist: - continue - if self.excludelist and name in self.excludelist: - continue - names.append(name) - return names - - def items(self, name, raw=False, vars=None): - self.logger.debug("calling GitModules items for {}".format(name)) - section = f'submodule "{name}"' - return ConfigParser.items(section, raw=raw, vars=vars) diff --git a/.lib/git-fleximod/git_fleximod/lstripreader.py b/.lib/git-fleximod/git_fleximod/lstripreader.py deleted file mode 100644 index 01d5580ee8..0000000000 --- a/.lib/git-fleximod/git_fleximod/lstripreader.py +++ /dev/null @@ -1,43 +0,0 @@ -class LstripReader(object): - "LstripReader formats .gitmodules files to be acceptable for configparser" - - def __init__(self, filename): - with open(filename, "r") as infile: - lines = infile.readlines() - self._lines = list() - self._num_lines = len(lines) - self._index = 0 - for line in lines: - self._lines.append(line.lstrip()) - - def readlines(self): - """Return all the lines from this object's file""" - return self._lines - - def readline(self, size=-1): - """Format and return the next line or raise StopIteration""" - try: - line = self.next() - except StopIteration: - line = "" - - if (size > 0) and (len(line) < size): - return line[0:size] - - return line - - def __iter__(self): - """Begin an iteration""" - self._index = 0 - return self - - def next(self): - """Return the next line or raise StopIteration""" - if self._index >= self._num_lines: - raise StopIteration - - self._index = self._index + 1 - return self._lines[self._index - 1] - - def __next__(self): - return self.next() diff --git a/.lib/git-fleximod/git_fleximod/metoflexi.py b/.lib/git-fleximod/git_fleximod/metoflexi.py deleted file mode 100755 index cc347db2dd..0000000000 --- a/.lib/git-fleximod/git_fleximod/metoflexi.py +++ /dev/null @@ -1,236 +0,0 @@ -#!/usr/bin/env python -from configparser import ConfigParser -import sys -import shutil -from pathlib import Path -import argparse -import logging -from git_fleximod.gitinterface import GitInterface -from git_fleximod.gitmodules import GitModules -from git_fleximod import utils - -logger = None - -def find_root_dir(filename=".git"): - d = Path.cwd() - root = Path(d.root) - while d != root: - attempt = d / filename - if attempt.is_dir(): - return d - d = d.parent - return None - - -def get_parser(): - description = """ - %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models - """ - parser = argparse.ArgumentParser( - description=description, formatter_class=argparse.RawDescriptionHelpFormatter - ) - - parser.add_argument('-e', '--externals', nargs='?', - default='Externals.cfg', - help='The externals description filename. ' - 'Default: %(default)s.') - - parser.add_argument( - "-C", - "--path", - default=find_root_dir(), - help="Toplevel repository directory. Defaults to top git directory relative to current.", - ) - - parser.add_argument( - "-g", - "--gitmodules", - nargs="?", - default=".gitmodules", - help="The submodule description filename. " "Default: %(default)s.", - ) - parser.add_argument( - "-v", - "--verbose", - action="count", - default=0, - help="Output additional information to " - "the screen and log file. This flag can be " - "used up to two times, increasing the " - "verbosity level each time.", - ) - parser.add_argument( - "-d", - "--debug", - action="store_true", - default=False, - help="DEVELOPER: output additional debugging " - "information to the screen and log file.", - ) - - return parser - -def commandline_arguments(args=None): - parser = get_parser() - - options = parser.parse_args(args) - handlers = [logging.StreamHandler()] - - if options.debug: - try: - open("fleximod.log", "w") - except PermissionError: - sys.exit("ABORT: Could not write file fleximod.log") - level = logging.DEBUG - handlers.append(logging.FileHandler("fleximod.log")) - elif options.verbose: - level = logging.INFO - else: - level = logging.WARNING - # Configure the root logger - logging.basicConfig( - level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers - ) - - return( - options.path, - options.gitmodules, - options.externals - ) - -class ExternalRepoTranslator: - """ - Translates external repositories configured in an INI-style externals file. - """ - - def __init__(self, rootpath, gitmodules, externals): - self.rootpath = rootpath - if gitmodules: - self.gitmodules = GitModules(logger, confpath=rootpath) - self.externals = (rootpath / Path(externals)).resolve() - print(f"Translating {self.externals}") - self.git = GitInterface(rootpath, logger) - -# def __del__(self): -# if (self.rootpath / "save.gitignore"): - - - def translate_single_repo(self, section, tag, url, path, efile, hash_, sparse, protocol): - """ - Translates a single repository based on configuration details. - - Args: - rootpath (str): Root path of the main repository. - gitmodules (str): Path to the .gitmodules file. - tag (str): The tag to use for the external repository. - url (str): The URL of the external repository. - path (str): The relative path within the main repository for the external repository. - efile (str): The external file or file containing submodules. - hash_ (str): The commit hash to checkout (if applicable). - sparse (str): Boolean indicating whether to use sparse checkout (if applicable). - protocol (str): The protocol to use (e.g., 'git', 'http'). - """ - assert protocol != "svn", "SVN protocol is not currently supported" - print(f"Translating repository {section}") - if efile: - file_path = Path(path) / Path(efile) - newroot = (self.rootpath / file_path).parent.resolve() - if not newroot.exists(): - newroot.mkdir(parents=True) - logger.info("Newroot is {}".format(newroot)) - newt = ExternalRepoTranslator(newroot, ".gitmodules", efile) - newt.translate_repo() - if protocol == "externals_only": - if tag: - self.gitmodules.set(section, "fxtag", tag) - if hash_: - self.gitmodules.set(section, "fxtag", hash_) - - self.gitmodules.set(section, "fxDONOTUSEurl", url) - if sparse: - self.gitmodules.set(section, "fxsparse", sparse) - self.gitmodules.set(section, "fxrequired", "ToplevelRequired") - else: - newpath = (self.rootpath / Path(path)) - if newpath.exists(): - shutil.rmtree(newpath) - logger.info("Creating directory {}".format(newpath)) - newpath.mkdir(parents=True) - if tag: - logger.info("cloning {}".format(section)) - try: - self.git.git_operation("clone", "-b", tag, "--depth", "1", url, path) - except: - self.git.git_operation("clone", url, path) - with utils.pushd(newpath): - ngit = GitInterface(newpath, logger) - ngit.git_operation("checkout", tag) - if hash_: - self.git.git_operation("clone", url, path) - git = GitInterface(newpath, logger) - git.git_operation("fetch", "origin") - git.git_operation("checkout", hash_) - if sparse: - print("setting as sparse submodule {}".format(section)) - sparsefile = (newpath / Path(sparse)) - newfile = (newpath / ".git" / "info" / "sparse-checkout") - print(f"sparsefile {sparsefile} newfile {newfile}") - shutil.copy(sparsefile, newfile) - - logger.info("adding submodule {}".format(section)) - self.gitmodules.save() - self.git.git_operation("submodule", "add", "-f", "--name", section, url, path) - self.git.git_operation("submodule","absorbgitdirs") - self.gitmodules.reload() - if tag: - self.gitmodules.set(section, "fxtag", tag) - if hash_: - self.gitmodules.set(section, "fxtag", hash_) - - self.gitmodules.set(section, "fxDONOTUSEurl", url) - if sparse: - self.gitmodules.set(section, "fxsparse", sparse) - self.gitmodules.set(section, "fxrequired", "ToplevelRequired") - - - def translate_repo(self): - """ - Translates external repositories defined within an external file. - - Args: - rootpath (str): Root path of the main repository. - gitmodules (str): Path to the .gitmodules file. - external_file (str): The path to the external file containing repository definitions. - """ - econfig = ConfigParser() - econfig.read((self.rootpath / Path(self.externals))) - - for section in econfig.sections(): - if section == "externals_description": - logger.info("skipping section {}".format(section)) - return - logger.info("Translating section {}".format(section)) - tag = econfig.get(section, "tag", raw=False, fallback=None) - url = econfig.get(section, "repo_url", raw=False, fallback=None) - path = econfig.get(section, "local_path", raw=False, fallback=None) - efile = econfig.get(section, "externals", raw=False, fallback=None) - hash_ = econfig.get(section, "hash", raw=False, fallback=None) - sparse = econfig.get(section, "sparse", raw=False, fallback=None) - protocol = econfig.get(section, "protocol", raw=False, fallback=None) - - self.translate_single_repo(section, tag, url, path, efile, hash_, sparse, protocol) - - - -def _main(): - rootpath, gitmodules, externals = commandline_arguments() - global logger - logger = logging.getLogger(__name__) - with utils.pushd(rootpath): - t = ExternalRepoTranslator(Path(rootpath), gitmodules, externals) - logger.info("Translating {}".format(rootpath)) - t.translate_repo() - - -if __name__ == "__main__": - sys.exit(_main()) diff --git a/.lib/git-fleximod/git_fleximod/utils.py b/.lib/git-fleximod/git_fleximod/utils.py deleted file mode 100644 index 7cc1de38cc..0000000000 --- a/.lib/git-fleximod/git_fleximod/utils.py +++ /dev/null @@ -1,365 +0,0 @@ -#!/usr/bin/env python3 -""" -Common public utilities for manic package - -""" - -import logging -import os -import subprocess -import sys -from threading import Timer -from pathlib import Path - -LOCAL_PATH_INDICATOR = "." -# --------------------------------------------------------------------- -# -# functions to massage text for output and other useful utilities -# -# --------------------------------------------------------------------- -from contextlib import contextmanager - - -@contextmanager -def pushd(new_dir): - """context for chdir. usage: with pushd(new_dir)""" - previous_dir = os.getcwd() - os.chdir(new_dir) - try: - yield - finally: - os.chdir(previous_dir) - - -def log_process_output(output): - """Log each line of process output at debug level so it can be - filtered if necessary. By default, output is a single string, and - logging.debug(output) will only put log info heading on the first - line. This makes it hard to filter with grep. - - """ - output = output.split("\n") - for line in output: - logging.debug(line) - - -def printlog(msg, **kwargs): - """Wrapper script around print to ensure that everything printed to - the screen also gets logged. - - """ - logging.info(msg) - if kwargs: - print(msg, **kwargs) - else: - print(msg) - sys.stdout.flush() - - -def find_upwards(root_dir, filename): - """Find a file in root dir or any of it's parents""" - d = Path(root_dir) - root = Path(d.root) - while d != root: - attempt = d / filename - if attempt.exists(): - return attempt - d = d.parent - return None - - -def last_n_lines(the_string, n_lines, truncation_message=None): - """Returns the last n lines of the given string - - Args: - the_string: str - n_lines: int - truncation_message: str, optional - - Returns a string containing the last n lines of the_string - - If truncation_message is provided, the returned string begins with - the given message if and only if the string is greater than n lines - to begin with. - """ - - lines = the_string.splitlines(True) - if len(lines) <= n_lines: - return_val = the_string - else: - lines_subset = lines[-n_lines:] - str_truncated = "".join(lines_subset) - if truncation_message: - str_truncated = truncation_message + "\n" + str_truncated - return_val = str_truncated - - return return_val - - -def indent_string(the_string, indent_level): - """Indents the given string by a given number of spaces - - Args: - the_string: str - indent_level: int - - Returns a new string that is the same as the_string, except that - each line is indented by 'indent_level' spaces. - - In python3, this can be done with textwrap.indent. - """ - - lines = the_string.splitlines(True) - padding = " " * indent_level - lines_indented = [padding + line for line in lines] - return "".join(lines_indented) - - -# --------------------------------------------------------------------- -# -# error handling -# -# --------------------------------------------------------------------- - - -def fatal_error(message): - """ - Error output function - """ - logging.error(message) - raise RuntimeError("{0}ERROR: {1}".format(os.linesep, message)) - - -# --------------------------------------------------------------------- -# -# Data conversion / manipulation -# -# --------------------------------------------------------------------- -def str_to_bool(bool_str): - """Convert a sting representation of as boolean into a true boolean. - - Conversion should be case insensitive. - """ - value = None - str_lower = bool_str.lower() - if str_lower in ("true", "t"): - value = True - elif str_lower in ("false", "f"): - value = False - if value is None: - msg = ( - 'ERROR: invalid boolean string value "{0}". ' - 'Must be "true" or "false"'.format(bool_str) - ) - fatal_error(msg) - return value - - -REMOTE_PREFIXES = ["http://", "https://", "ssh://", "git@"] - - -def is_remote_url(url): - """check if the user provided a local file path instead of a - remote. If so, it must be expanded to an absolute - path. - - """ - remote_url = False - for prefix in REMOTE_PREFIXES: - if url.startswith(prefix): - remote_url = True - return remote_url - - -def split_remote_url(url): - """check if the user provided a local file path or a - remote. If remote, try to strip off protocol info. - - """ - remote_url = is_remote_url(url) - if not remote_url: - return url - - for prefix in REMOTE_PREFIXES: - url = url.replace(prefix, "") - - if "@" in url: - url = url.split("@")[1] - - if ":" in url: - url = url.split(":")[1] - - return url - - -def expand_local_url(url, field): - """check if the user provided a local file path instead of a - remote. If so, it must be expanded to an absolute - path. - - Note: local paths of LOCAL_PATH_INDICATOR have special meaning and - represent local copy only, don't work with the remotes. - - """ - remote_url = is_remote_url(url) - if not remote_url: - if url.strip() == LOCAL_PATH_INDICATOR: - pass - else: - url = os.path.expandvars(url) - url = os.path.expanduser(url) - if not os.path.isabs(url): - msg = ( - 'WARNING: Externals description for "{0}" contains a ' - "url that is not remote and does not expand to an " - "absolute path. Version control operations may " - "fail.\n\nurl={1}".format(field, url) - ) - printlog(msg) - else: - url = os.path.normpath(url) - return url - - -# --------------------------------------------------------------------- -# -# subprocess -# -# --------------------------------------------------------------------- - -# Give the user a helpful message if we detect that a command seems to -# be hanging. -_HANGING_SEC = 300 - - -def _hanging_msg(working_directory, command): - print( - """ - -Command '{command}' -from directory {working_directory} -has taken {hanging_sec} seconds. It may be hanging. - -The command will continue to run, but you may want to abort -manage_externals with ^C and investigate. A possible cause of hangs is -when svn or git require authentication to access a private -repository. On some systems, svn and git requests for authentication -information will not be displayed to the user. In this case, the program -will appear to hang. Ensure you can run svn and git manually and access -all repositories without entering your authentication information. - -""".format( - command=command, - working_directory=working_directory, - hanging_sec=_HANGING_SEC, - ) - ) - - -def execute_subprocess(commands, status_to_caller=False, output_to_caller=False): - """Wrapper around subprocess.check_output to handle common - exceptions. - - check_output runs a command with arguments and waits - for it to complete. - - check_output raises an exception on a nonzero return code. if - status_to_caller is true, execute_subprocess returns the subprocess - return code, otherwise execute_subprocess treats non-zero return - status as an error and raises an exception. - - """ - cwd = os.getcwd() - msg = "In directory: {0}\nexecute_subprocess running command:".format(cwd) - logging.info(msg) - commands_str = " ".join(str(element) for element in commands) - logging.info(commands_str) - return_to_caller = status_to_caller or output_to_caller - status = -1 - output = "" - hanging_timer = Timer( - _HANGING_SEC, - _hanging_msg, - kwargs={"working_directory": cwd, "command": commands_str}, - ) - hanging_timer.start() - try: - output = subprocess.check_output( - commands, stderr=subprocess.STDOUT, universal_newlines=True - ) - log_process_output(output) - status = 0 - except OSError as error: - msg = failed_command_msg( - "Command execution failed. Does the executable exist?", commands - ) - logging.error(error) - fatal_error(msg) - except ValueError as error: - msg = failed_command_msg( - "DEV_ERROR: Invalid arguments trying to run subprocess", commands - ) - logging.error(error) - fatal_error(msg) - except subprocess.CalledProcessError as error: - # Only report the error if we are NOT returning to the - # caller. If we are returning to the caller, then it may be a - # simple status check. If returning, it is the callers - # responsibility determine if an error occurred and handle it - # appropriately. - if not return_to_caller: - msg_context = ( - "Process did not run successfully; " - "returned status {0}".format(error.returncode) - ) - msg = failed_command_msg(msg_context, commands, output=error.output) - logging.error(error) - logging.error(msg) - log_process_output(error.output) - fatal_error(msg) - status = error.returncode - finally: - hanging_timer.cancel() - - if status_to_caller and output_to_caller: - ret_value = (status, output) - elif status_to_caller: - ret_value = status - elif output_to_caller: - ret_value = output - else: - ret_value = None - - return ret_value - - -def failed_command_msg(msg_context, command, output=None): - """Template for consistent error messages from subprocess calls. - - If 'output' is given, it should provide the output from the failed - command - """ - - if output: - output_truncated = last_n_lines( - output, 20, truncation_message="[... 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-[metadata] -lock-version = "2.0" -python-versions = "^3.8" -content-hash = "25ee2ae1d74abedde3a6637a60d4a3095ea5cf9731960875741bbc2ba84a475d" diff --git a/.lib/git-fleximod/pyproject.toml b/.lib/git-fleximod/pyproject.toml deleted file mode 100644 index 2484552e4f..0000000000 --- a/.lib/git-fleximod/pyproject.toml +++ /dev/null @@ -1,41 +0,0 @@ -[tool.poetry] -name = "git-fleximod" -version = "0.7.4" -description = "Extended support for git-submodule and git-sparse-checkout" -authors = ["Jim Edwards "] -maintainers = ["Jim Edwards "] -license = "MIT" -readme = "README.md" -homepage = "https://github.com/jedwards4b/git-fleximod" -keywords = ["git", "submodule", "sparse-checkout"] -packages = [ -{ include = "git_fleximod"}, -{ include = "doc"}, -] - -[tool.poetry.scripts] -git-fleximod = "git_fleximod.git_fleximod:main" -me2flexi = "git_fleximod.metoflexi:_main" -fsspec = "fsspec.fuse:main" - -[tool.poetry.dependencies] -python = "^3.8" -GitPython = "^3.1.0" -sphinx = "^5.0.0" -fsspec = "^2023.12.2" -wheel = "^0.42.0" -pytest = "^8.0.0" -pyfakefs = "^5.3.5" - -[tool.poetry.urls] -"Bug Tracker" = "https://github.com/jedwards4b/git-fleximod/issues" - -[tool.pytest.ini_options] -markers = [ - "skip_after_first: only run on first iteration" -] - -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" - diff --git a/.lib/git-fleximod/tbump.toml b/.lib/git-fleximod/tbump.toml deleted file mode 100644 index d4b8eaee11..0000000000 --- a/.lib/git-fleximod/tbump.toml +++ /dev/null @@ -1,43 +0,0 @@ -# Uncomment this if your project is hosted on GitHub: -github_url = "https://github.com/jedwards4b/git-fleximod/" - -[version] -current = "0.7.4" - -# Example of a semver regexp. -# Make sure this matches current_version before -# using tbump -regex = ''' - (?P\d+) - \. - (?P\d+) - \. - (?P\d+) - ''' - -[git] -message_template = "Bump to {new_version}" -tag_template = "v{new_version}" - -# For each file to patch, add a [[file]] config -# section containing the path of the file, relative to the -# tbump.toml location. -[[file]] -src = "git_fleximod/cli.py" - -[[file]] -src = "pyproject.toml" - -# You can specify a list of commands to -# run after the files have been patched -# and before the git commit is made - -# [[before_commit]] -# name = "check changelog" -# cmd = "grep -q {new_version} Changelog.rst" - -# Or run some commands after the git tag and the branch -# have been pushed: -# [[after_push]] -# name = "publish" -# cmd = "./publish.sh" diff --git a/.lib/git-fleximod/tests/__init__.py b/.lib/git-fleximod/tests/__init__.py deleted file mode 100644 index 4d4c66c78e..0000000000 --- a/.lib/git-fleximod/tests/__init__.py +++ /dev/null @@ -1,3 +0,0 @@ -import sys, os - -sys.path.append(os.path.join(os.path.dirname(__file__), os.path.pardir, "src")) diff --git a/.lib/git-fleximod/tests/conftest.py b/.lib/git-fleximod/tests/conftest.py deleted file mode 100644 index 942a0efb97..0000000000 --- a/.lib/git-fleximod/tests/conftest.py +++ /dev/null @@ -1,138 +0,0 @@ -import pytest -from git_fleximod.gitinterface import GitInterface -import os -import subprocess -import logging -from pathlib import Path - -@pytest.fixture(scope='session') -def logger(): - logging.basicConfig( - level=logging.INFO, format="%(name)s - %(levelname)s - %(message)s", handlers=[logging.StreamHandler()] - ) - logger = logging.getLogger(__name__) - return logger - -all_repos=[ - {"subrepo_path": "modules/test", - "submodule_name": "test_submodule", - "status1" : "test_submodule MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", - "status2" : "test_submodule at tag MPIserial_2.4.0", - "status3" : "test_submodule at tag MPIserial_2.4.0", - "status4" : "test_submodule at tag MPIserial_2.4.0", - "gitmodules_content" : """ - [submodule "test_submodule"] - path = modules/test - url = https://github.com/ESMCI/mpi-serial.git - fxtag = MPIserial_2.4.0 - fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git - fxrequired = ToplevelRequired -"""}, - {"subrepo_path": "modules/test_optional", - "submodule_name": "test_optional", - "status1" : "test_optional MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", - "status2" : "test_optional at tag MPIserial_2.4.0", - "status3" : "test_optional not checked out, aligned at tag MPIserial_2.4.0", - "status4" : "test_optional at tag MPIserial_2.4.0", - "gitmodules_content": """ - [submodule "test_optional"] - path = modules/test_optional - url = https://github.com/ESMCI/mpi-serial.git - fxtag = MPIserial_2.4.0 - fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git - fxrequired = ToplevelOptional -"""}, - {"subrepo_path": "modules/test_alwaysoptional", - "submodule_name": "test_alwaysoptional", - "status1" : "test_alwaysoptional MPIserial_2.3.0 is out of sync with .gitmodules e5cf35c", - "status2" : "test_alwaysoptional at hash e5cf35c", - "status3" : "test_alwaysoptional not checked out, out of sync at tag MPIserial_2.3.0", - "status4" : "test_alwaysoptional at hash e5cf35c", - "gitmodules_content": """ - [submodule "test_alwaysoptional"] - path = modules/test_alwaysoptional - url = https://github.com/ESMCI/mpi-serial.git - fxtag = e5cf35c - fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git - fxrequired = AlwaysOptional -"""}, - {"subrepo_path": "modules/test_sparse", - "submodule_name": "test_sparse", - "status1" : "test_sparse at tag MPIserial_2.5.0", - "status2" : "test_sparse at tag MPIserial_2.5.0", - "status3" : "test_sparse at tag MPIserial_2.5.0", - "status4" : "test_sparse at tag MPIserial_2.5.0", - "gitmodules_content": """ - [submodule "test_sparse"] - path = modules/test_sparse - url = https://github.com/ESMCI/mpi-serial.git - fxtag = MPIserial_2.5.0 - fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git - fxrequired = AlwaysRequired - fxsparse = ../.sparse_file_list -"""}, -] -@pytest.fixture(params=all_repos) - -def shared_repos(request): - return request.param - -@pytest.fixture -def get_all_repos(): - return all_repos - -def write_sparse_checkout_file(fp): - sparse_content = """m4 -""" - fp.write_text(sparse_content) - -@pytest.fixture -def test_repo(shared_repos, tmp_path, logger): - subrepo_path = shared_repos["subrepo_path"] - submodule_name = shared_repos["submodule_name"] - test_dir = tmp_path / "testrepo" - test_dir.mkdir() - str_path = str(test_dir) - gitp = GitInterface(str_path, logger) - assert test_dir.joinpath(".git").is_dir() - (test_dir / "modules").mkdir() - if "sparse" in submodule_name: - (test_dir / subrepo_path).mkdir() - # Add the sparse checkout file - write_sparse_checkout_file(test_dir / "modules" / ".sparse_file_list") - gitp.git_operation("add","modules/.sparse_file_list") - else: - gitp = GitInterface(str(test_dir), logger) - gitp.git_operation("submodule", "add", "--depth","1","--name", submodule_name, "https://github.com/ESMCI/mpi-serial.git", subrepo_path) - assert test_dir.joinpath(".gitmodules").is_file() - gitp.git_operation("add",subrepo_path) - gitp.git_operation("commit","-a","-m","\"add submod\"") - test_dir2 = tmp_path / "testrepo2" - gitp.git_operation("clone",test_dir,test_dir2) - return test_dir2 - - -@pytest.fixture -def complex_repo(tmp_path, logger): - test_dir = tmp_path / "testcomplex" - test_dir.mkdir() - str_path = str(test_dir) - gitp = GitInterface(str_path, logger) - gitp.git_operation("remote", "add", "origin", "https://github.com/jedwards4b/fleximod-test2") - gitp.git_operation("fetch", "origin", "main") - gitp.git_operation("checkout", "main") - return test_dir - -@pytest.fixture -def git_fleximod(): - def _run_fleximod(path, args, input=None): - cmd = ["git", "fleximod"] + args.split() - result = subprocess.run(cmd, cwd=path, input=input, - stdout=subprocess.PIPE, stderr=subprocess.PIPE, - text=True) - if result.returncode: - print(result.stdout) - print(result.stderr) - return result - return _run_fleximod - diff --git a/.lib/git-fleximod/tests/test_a_import.py b/.lib/git-fleximod/tests/test_a_import.py deleted file mode 100644 index d5ca878de5..0000000000 --- a/.lib/git-fleximod/tests/test_a_import.py +++ /dev/null @@ -1,8 +0,0 @@ -# pylint: disable=unused-import -from git_fleximod import cli -from git_fleximod import utils -from git_fleximod.gitinterface import GitInterface -from git_fleximod.gitmodules import GitModules - -def test_import(): - print("here") diff --git a/.lib/git-fleximod/tests/test_b_update.py b/.lib/git-fleximod/tests/test_b_update.py deleted file mode 100644 index 159f1cfae0..0000000000 --- a/.lib/git-fleximod/tests/test_b_update.py +++ /dev/null @@ -1,26 +0,0 @@ -import pytest -from pathlib import Path - -def test_basic_checkout(git_fleximod, test_repo, shared_repos): - # Prepare a simple .gitmodules - gm = shared_repos['gitmodules_content'] - file_path = (test_repo / ".gitmodules") - repo_name = shared_repos["submodule_name"] - repo_path = shared_repos["subrepo_path"] - - file_path.write_text(gm) - - # Run the command - result = git_fleximod(test_repo, f"update {repo_name}") - - # Assertions - assert result.returncode == 0 - assert Path(test_repo / repo_path).exists() # Did the submodule directory get created? - if "sparse" in repo_name: - assert Path(test_repo / f"{repo_path}/m4").exists() # Did the submodule sparse directory get created? - assert not Path(test_repo / f"{repo_path}/README").exists() # Did only the submodule sparse directory get created? - - status = git_fleximod(test_repo, f"status {repo_name}") - - assert shared_repos["status2"] in status.stdout - diff --git a/.lib/git-fleximod/tests/test_c_required.py b/.lib/git-fleximod/tests/test_c_required.py deleted file mode 100644 index 89ab8d294d..0000000000 --- a/.lib/git-fleximod/tests/test_c_required.py +++ /dev/null @@ -1,30 +0,0 @@ -import pytest -from pathlib import Path - -def test_required(git_fleximod, test_repo, shared_repos): - file_path = (test_repo / ".gitmodules") - gm = shared_repos["gitmodules_content"] - repo_name = shared_repos["submodule_name"] - if file_path.exists(): - with file_path.open("r") as f: - gitmodules_content = f.read() - # add the entry if it does not exist - if repo_name not in gitmodules_content: - file_path.write_text(gitmodules_content+gm) - # or if it is incomplete - elif gm not in gitmodules_content: - file_path.write_text(gm) - else: - file_path.write_text(gm) - result = git_fleximod(test_repo, "update") - assert result.returncode == 0 - status = git_fleximod(test_repo, f"status {repo_name}") - assert shared_repos["status3"] in status.stdout - status = git_fleximod(test_repo, f"update --optional") - assert result.returncode == 0 - status = git_fleximod(test_repo, f"status {repo_name}") - assert shared_repos["status4"] in status.stdout - status = git_fleximod(test_repo, f"update {repo_name}") - assert result.returncode == 0 - status = git_fleximod(test_repo, f"status {repo_name}") - assert shared_repos["status4"] in status.stdout diff --git a/.lib/git-fleximod/tests/test_d_complex.py b/.lib/git-fleximod/tests/test_d_complex.py deleted file mode 100644 index fdce516274..0000000000 --- a/.lib/git-fleximod/tests/test_d_complex.py +++ /dev/null @@ -1,67 +0,0 @@ -import pytest -from pathlib import Path -from git_fleximod.gitinterface import GitInterface - -def test_complex_checkout(git_fleximod, complex_repo, logger): - status = git_fleximod(complex_repo, "status") - assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) - assert("ToplevelRequired not checked out, aligned at tag MPIserial_2.5.0" in status.stdout) - assert("AlwaysRequired not checked out, aligned at tag MPIserial_2.4.0" in status.stdout) - assert("Complex not checked out, aligned at tag testtag01" in status.stdout) - assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) - - # This should checkout and update test_submodule and complex_sub - result = git_fleximod(complex_repo, "update") - assert result.returncode == 0 - - status = git_fleximod(complex_repo, "status") - assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) - assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) - assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) - assert("Complex at tag testtag01" in status.stdout) - - # now check the complex_sub - root = (complex_repo / "modules" / "complex") - assert(not (root / "libraries" / "gptl" / ".git").exists()) - assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) - assert((root / "modules" / "mpi-serial" / ".git").exists()) - assert(not (root / "modules" / "mpi-serial2" / ".git").exists()) - assert((root / "modules" / "mpi-sparse" / ".git").exists()) - assert((root / "modules" / "mpi-sparse" / "m4").exists()) - assert(not (root / "modules" / "mpi-sparse" / "README").exists()) - - # update a single optional submodule - - result = git_fleximod(complex_repo, "update ToplevelOptional") - assert result.returncode == 0 - - status = git_fleximod(complex_repo, "status") - assert("ToplevelOptional at tag v5.3.2" in status.stdout) - assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) - assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) - assert("Complex at tag testtag01" in status.stdout) - assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) - - - # Finally update optional - result = git_fleximod(complex_repo, "update --optional") - assert result.returncode == 0 - - status = git_fleximod(complex_repo, "status") - assert("ToplevelOptional at tag v5.3.2" in status.stdout) - assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) - assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) - assert("Complex at tag testtag01" in status.stdout) - assert("AlwaysOptional at tag MPIserial_2.3.0" in status.stdout) - - # now check the complex_sub - root = (complex_repo / "modules" / "complex" ) - assert(not (root / "libraries" / "gptl" / ".git").exists()) - assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) - assert((root / "modules" / "mpi-serial" / ".git").exists()) - assert((root / "modules" / "mpi-serial2" / ".git").exists()) - assert((root / "modules" / "mpi-sparse" / ".git").exists()) - assert((root / "modules" / "mpi-sparse" / "m4").exists()) - assert(not (root / "modules" / "mpi-sparse" / "README").exists()) - - From eb94e4d298564d52197d9cf632d73ffad74c5f61 Mon Sep 17 00:00:00 2001 From: Jim Edwards Date: Fri, 31 May 2024 10:20:12 -0600 Subject: [PATCH 16/19] Squashed '.lib/git-fleximod/' content from commit a354b0528 git-subtree-dir: .lib/git-fleximod git-subtree-split: a354b0528228ac89ce103b3b42b2a203fe495ba5 --- .github/workflows/pre-commit | 13 + .github/workflows/pytest.yaml | 77 ++++ .pre-commit-config.yaml | 18 + License | 20 + README.md | 108 ++++++ doc/Makefile | 20 + doc/conf.py | 26 ++ doc/index.rst | 24 ++ doc/make.bat | 35 ++ escomp_install | 25 ++ git_fleximod/__init__.py | 0 git_fleximod/cli.py | 129 +++++++ git_fleximod/git_fleximod.py | 605 +++++++++++++++++++++++++++++ git_fleximod/gitinterface.py | 79 ++++ git_fleximod/gitmodules.py | 97 +++++ git_fleximod/lstripreader.py | 43 +++ git_fleximod/metoflexi.py | 236 ++++++++++++ git_fleximod/utils.py | 365 ++++++++++++++++++ poetry.lock | 693 ++++++++++++++++++++++++++++++++++ pyproject.toml | 41 ++ tbump.toml | 43 +++ tests/__init__.py | 3 + tests/conftest.py | 138 +++++++ tests/test_a_import.py | 8 + tests/test_b_update.py | 26 ++ tests/test_c_required.py | 30 ++ tests/test_d_complex.py | 67 ++++ 27 files changed, 2969 insertions(+) create mode 100644 .github/workflows/pre-commit create mode 100644 .github/workflows/pytest.yaml create mode 100644 .pre-commit-config.yaml create mode 100644 License create mode 100644 README.md create mode 100644 doc/Makefile create mode 100644 doc/conf.py create mode 100644 doc/index.rst create mode 100644 doc/make.bat create mode 100644 escomp_install create mode 100644 git_fleximod/__init__.py create mode 100644 git_fleximod/cli.py create mode 100755 git_fleximod/git_fleximod.py create mode 100644 git_fleximod/gitinterface.py create mode 100644 git_fleximod/gitmodules.py create mode 100644 git_fleximod/lstripreader.py create mode 100755 git_fleximod/metoflexi.py create mode 100644 git_fleximod/utils.py create mode 100644 poetry.lock create mode 100644 pyproject.toml create mode 100644 tbump.toml create mode 100644 tests/__init__.py create mode 100644 tests/conftest.py create mode 100644 tests/test_a_import.py create mode 100644 tests/test_b_update.py create mode 100644 tests/test_c_required.py create mode 100644 tests/test_d_complex.py diff --git a/.github/workflows/pre-commit b/.github/workflows/pre-commit new file mode 100644 index 0000000000..1a6ad0082a --- /dev/null +++ b/.github/workflows/pre-commit @@ -0,0 +1,13 @@ +name: pre-commit +on: + pull_request: + push: + branches: [main] + +jobs: + pre-commit: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v3 + - uses: actions/setup-python@v3 + - uses: pre-commit/action@v3.0.0 diff --git a/.github/workflows/pytest.yaml b/.github/workflows/pytest.yaml new file mode 100644 index 0000000000..0868dd9a33 --- /dev/null +++ b/.github/workflows/pytest.yaml @@ -0,0 +1,77 @@ +# Run this job on pushes to `main`, and for pull requests. If you don't specify +# `branches: [main], then this actions runs _twice_ on pull requests, which is +# annoying. + +on: + push: + branches: [main] + pull_request: + branches: [main] + +jobs: + test: + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + + # If you wanted to use multiple Python versions, you'd have specify a matrix in the job and + # reference the matrixe python version here. + - uses: actions/setup-python@v5 + with: + python-version: '3.9' + + # Cache the installation of Poetry itself, e.g. the next step. This prevents the workflow + # from installing Poetry every time, which can be slow. Note the use of the Poetry version + # number in the cache key, and the "-0" suffix: this allows you to invalidate the cache + # manually if/when you want to upgrade Poetry, or if something goes wrong. This could be + # mildly cleaner by using an environment variable, but I don't really care. + - name: cache poetry install + uses: actions/cache@v4 + with: + path: ~/.local + key: poetry-1.7.1 + + # Install Poetry. You could do this manually, or there are several actions that do this. + # `snok/install-poetry` seems to be minimal yet complete, and really just calls out to + # Poetry's default install script, which feels correct. I pin the Poetry version here + # because Poetry does occasionally change APIs between versions and I don't want my + # actions to break if it does. + # + # The key configuration value here is `virtualenvs-in-project: true`: this creates the + # venv as a `.venv` in your testing directory, which allows the next step to easily + # cache it. + - uses: snok/install-poetry@v1 + with: + version: 1.7.1 + virtualenvs-create: true + virtualenvs-in-project: true + + # Cache your dependencies (i.e. all the stuff in your `pyproject.toml`). Note the cache + # key: if you're using multiple Python versions, or multiple OSes, you'd need to include + # them in the cache key. I'm not, so it can be simple and just depend on the poetry.lock. + - name: cache deps + id: cache-deps + uses: actions/cache@v4 + with: + path: .venv + key: pydeps-${{ hashFiles('**/poetry.lock') }} + + # Install dependencies. `--no-root` means "install all dependencies but not the project + # itself", which is what you want to avoid caching _your_ code. The `if` statement + # ensures this only runs on a cache miss. + - run: poetry install --no-interaction --no-root + if: steps.cache-deps.outputs.cache-hit != 'true' + + # Now install _your_ project. This isn't necessary for many types of projects -- particularly + # things like Django apps don't need this. But it's a good idea since it fully-exercises the + # pyproject.toml and makes that if you add things like console-scripts at some point that + # they'll be installed and working. + - run: poetry install --no-interaction + + # And finally run tests. I'm using pytest and all my pytest config is in my `pyproject.toml` + # so this line is super-simple. But it could be as complex as you need. + - run: | + git config --global user.name "${GITHUB_ACTOR}" + git config --global user.email "${GITHUB_ACTOR_ID}+${GITHUB_ACTOR}@users.noreply.github.com" + poetry run pytest + diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000000..2f6089da72 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,18 @@ +exclude: ^utils/.*$ + +repos: + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.0.1 + hooks: + - id: end-of-file-fixer + - id: trailing-whitespace + - repo: https://github.com/psf/black + rev: 22.3.0 + hooks: + - id: black + - repo: https://github.com/PyCQA/pylint + rev: v2.11.1 + hooks: + - id: pylint + args: + - --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement,logging-format-interpolation,no-name-in-module,arguments-renamed,unspecified-encoding,protected-access,import-error,no-member diff --git a/License b/License new file mode 100644 index 0000000000..88bc22515e --- /dev/null +++ b/License @@ -0,0 +1,20 @@ +Copyright 2024 NSF National Center for Atmospheric Sciences (NCAR) + +Permission is hereby granted, free of charge, to any person obtaining +a copy of this software and associated documentation files (the +“Softwareâ€), to deal in the Software without restriction, including +without limitation the rights to use, copy, modify, merge, publish, +distribute, sublicense, and/or sell copies of the Software, and to +permit persons to whom the Software is furnished to do so, subject to +the following conditions: + +The above copyright notice and this permission notice shall be +included in all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED “AS ISâ€, WITHOUT WARRANTY OF ANY KIND, +EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF +MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND +NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE +LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION +OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION +WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. diff --git a/README.md b/README.md new file mode 100644 index 0000000000..53917da400 --- /dev/null +++ b/README.md @@ -0,0 +1,108 @@ +# git-fleximod + +Flexible, Enhanced Submodule Management for Git + +## Overview + +Git-fleximod is a Python-based tool that extends Git's submodule and sparse checkout capabilities, offering additional features for managing submodules in a more flexible and efficient way. + +## Installation + + If you choose to locate git-fleximod in your path you can access it via command: git fleximod + +## Usage + + Basic Usage: + git fleximod [options] + Available Commands: + status: Display the status of submodules. + update: Update submodules to the tag indicated in .gitmodules variable fxtag. + test: Make sure that fxtags and submodule hashes are consistant, + make sure that official urls (as defined by fxDONOTUSEurl) are set + make sure that fxtags are defined for all submodules + Additional Options: + See git fleximod --help for more details. + +## Supported .gitmodules Variables + + fxtag: Specify a specific tag or branch to checkout for a submodule. + fxrequired: Mark a submodule's checkout behavior, with allowed values: + - ToplevelRequired: Top-level and required (checked out only when this is the Toplevel module). + - ToplevelOptional: Top-level and optional (checked out with --optional flag if this is the Toplevel module). + - AlwaysRequired: Always required (always checked out). + - AlwaysOptional: Always optional (checked out with --optional flag). + fxsparse: Enable sparse checkout for a submodule, pointing to a file containing sparse checkout paths. + fxDONOTUSEurl: This is the url used in the test subcommand to assure that protected branches do not point to forks + **NOTE** the fxDONOTUSEurl variable is only used to identify the official project repository and should not be + changed by users. Use the url variable to change to a fork if desired. + +## Sparse Checkouts + + To enable sparse checkout for a submodule, set the fxsparse variable + in the .gitmodules file to the path of a file containing the desired + sparse checkout paths. Git-fleximod will automatically configure + sparse checkout based on this file when applicable commands are run. + See [git-sparse-checkout](https://git-scm.com/docs/git-sparse-checkout#_internalsfull_pattern_set) + for details on the format of this file. + +## Tests + + The git fleximod test action is designed to be used by, for example, github workflows + to assure that protected branches are consistant with respect to submodule hashes and fleximod fxtags + +## Examples + +Here are some common usage examples: + +Update all submodules, including optional ones: +```bash + git fleximod update --optional +``` + +Updating a specific submodule to the fxtag indicated in .gitmodules: + +```bash + git fleximod update submodule-name +``` +Example .gitmodules entry: +```ini, toml + [submodule "cosp2"] + path = src/physics/cosp2/src + url = https://github.com/CFMIP/COSPv2.0 + fxsparse = ../.cosp_sparse_checkout + fxrequired = AlwaysRequired + fxtag = v2.1.4cesm +``` +Explanation: + +This entry indicates that the submodule named cosp2 at tag v2.1.4cesm +should be checked out into the directory src/physics/cosp2/src +relative to the .gitmodules directory. It should be checked out from +the URL https://github.com/CFMIP/COSPv2.0 and use sparse checkout as +described in the file ../.cosp_sparse_checkout relative to the path +directory. It should be checked out anytime this .gitmodules entry is +read. + +Additional example: +```ini, toml + [submodule "cime"] + path = cime + url = https://github.com/jedwards4b/cime + fxrequired = ToplevelRequired + fxtag = cime6.0.198_rme01 +``` + +Explanation: + +This entry indicates that the submodule cime should be checked out +into a directory named cime at tag cime6.0.198_rme01 from the URL +https://github.com/jedwards4b/cime. This should only be done if +the .gitmodules file is at the top level of the repository clone. + +## Contributing + +We welcome contributions! Please see the CONTRIBUTING.md file for guidelines. + +## License + +Git-fleximod is released under the MIT License. diff --git a/doc/Makefile b/doc/Makefile new file mode 100644 index 0000000000..d4bb2cbb9e --- /dev/null +++ b/doc/Makefile @@ -0,0 +1,20 @@ +# Minimal makefile for Sphinx documentation +# + +# You can set these variables from the command line, and also +# from the environment for the first two. +SPHINXOPTS ?= +SPHINXBUILD ?= sphinx-build +SOURCEDIR = . +BUILDDIR = _build + +# Put it first so that "make" without argument is like "make help". +help: + @$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) + +.PHONY: help Makefile + +# Catch-all target: route all unknown targets to Sphinx using the new +# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS). +%: Makefile + @$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O) diff --git a/doc/conf.py b/doc/conf.py new file mode 100644 index 0000000000..423099eec9 --- /dev/null +++ b/doc/conf.py @@ -0,0 +1,26 @@ +# Configuration file for the Sphinx documentation builder. +# +# For the full list of built-in configuration values, see the documentation: +# https://www.sphinx-doc.org/en/master/usage/configuration.html + +# -- Project information ----------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#project-information + +project = "git-fleximod" +author = "Jim Edwards " +release = "0.4.0" + +# -- General configuration --------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#general-configuration + +extensions = ["sphinx_argparse_cli"] + +templates_path = ["_templates"] +exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] + + +# -- Options for HTML output ------------------------------------------------- +# https://www.sphinx-doc.org/en/master/usage/configuration.html#options-for-html-output + +html_theme = "alabaster" +html_static_path = ["_static"] diff --git a/doc/index.rst b/doc/index.rst new file mode 100644 index 0000000000..0f9c1a7f7e --- /dev/null +++ b/doc/index.rst @@ -0,0 +1,24 @@ +.. git-fleximod documentation master file, created by + sphinx-quickstart on Sat Feb 3 12:02:22 2024. + You can adapt this file completely to your liking, but it should at least + contain the root `toctree` directive. + +Welcome to git-fleximod's documentation! +======================================== + +.. toctree:: + :maxdepth: 2 + :caption: Contents: +.. module:: sphinxcontrib.autoprogram +.. sphinx_argparse_cli:: + :module: git_fleximod.cli + :func: get_parser + :prog: git-fleximod + + +Indices and tables +================== + +* :ref:`genindex` +* :ref:`modindex` +* :ref:`search` diff --git a/doc/make.bat b/doc/make.bat new file mode 100644 index 0000000000..32bb24529f --- /dev/null +++ b/doc/make.bat @@ -0,0 +1,35 @@ +@ECHO OFF + +pushd %~dp0 + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set SOURCEDIR=. +set BUILDDIR=_build + +%SPHINXBUILD% >NUL 2>NUL +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.https://www.sphinx-doc.org/ + exit /b 1 +) + +if "%1" == "" goto help + +%SPHINXBUILD% -M %1 %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% +goto end + +:help +%SPHINXBUILD% -M help %SOURCEDIR% %BUILDDIR% %SPHINXOPTS% %O% + +:end +popd diff --git a/escomp_install b/escomp_install new file mode 100644 index 0000000000..ae782e72a4 --- /dev/null +++ b/escomp_install @@ -0,0 +1,25 @@ +#!/usr/bin/env python +# updates git-fleximod in an ESCOMP model +# this script should be run from the model root directory, it expects +# git-fleximod to already be installed with the script in bin +# and the classes in lib/python/site-packages +import sys +import shutil +import os + +from glob import iglob + +fleximod_root = sys.argv[1] +fleximod_path = os.path.join(fleximod_root,"src","git-fleximod") +if os.path.isfile(fleximod_path): + with open(fleximod_path,"r") as f: + fleximod = f.readlines() + with open(os.path.join(".","bin","git-fleximod"),"w") as f: + for line in fleximod: + f.write(line) + if "import argparse" in line: + f.write('\nsys.path.append(os.path.join(os.path.dirname(__file__),"..","lib","python","site-packages"))\n\n') + + for file in iglob(os.path.join(fleximod_root, "src", "fleximod", "*.py")): + shutil.copy(file, + os.path.join("lib","python","site-packages","fleximod",os.path.basename(file))) diff --git a/git_fleximod/__init__.py b/git_fleximod/__init__.py new file mode 100644 index 0000000000..e69de29bb2 diff --git a/git_fleximod/cli.py b/git_fleximod/cli.py new file mode 100644 index 0000000000..4c3fb1a8f9 --- /dev/null +++ b/git_fleximod/cli.py @@ -0,0 +1,129 @@ +from pathlib import Path +import argparse +from git_fleximod import utils + +__version__ = "0.7.5" + +def find_root_dir(filename=".gitmodules"): + """ finds the highest directory in tree + which contains a file called filename """ + d = Path.cwd() + root = Path(d.root) + dirlist = [] + dl = d + while dl != root: + dirlist.append(dl) + dl = dl.parent + dirlist.append(root) + dirlist.reverse() + + for dl in dirlist: + attempt = dl / filename + if attempt.is_file(): + return str(dl) + utils.fatal_error("No .gitmodules found in directory tree") + + +def get_parser(): + description = """ + %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models + """ + parser = argparse.ArgumentParser( + description=description, formatter_class=argparse.RawDescriptionHelpFormatter + ) + + # + # user options + # + choices = ["update", "status", "test"] + parser.add_argument( + "action", + choices=choices, + default="update", + help=f"Subcommand of git-fleximod, choices are {choices[:-1]}", + ) + + parser.add_argument( + "components", + nargs="*", + help="Specific component(s) to checkout. By default, " + "all required submodules are checked out.", + ) + + parser.add_argument( + "-C", + "--path", + default=find_root_dir(), + help="Toplevel repository directory. Defaults to top git directory relative to current.", + ) + + parser.add_argument( + "-g", + "--gitmodules", + nargs="?", + default=".gitmodules", + help="The submodule description filename. " "Default: %(default)s.", + ) + + parser.add_argument( + "-x", + "--exclude", + nargs="*", + help="Component(s) listed in the gitmodules file which should be ignored.", + ) + parser.add_argument( + "-f", + "--force", + action="store_true", + default=False, + help="Override cautions and update or checkout over locally modified repository.", + ) + + parser.add_argument( + "-o", + "--optional", + action="store_true", + default=False, + help="By default only the required submodules " + "are checked out. This flag will also checkout the " + "optional submodules relative to the toplevel directory.", + ) + + parser.add_argument( + "-v", + "--verbose", + action="count", + default=0, + help="Output additional information to " + "the screen and log file. This flag can be " + "used up to two times, increasing the " + "verbosity level each time.", + ) + + parser.add_argument( + "-V", + "--version", + action="version", + version=f"%(prog)s {__version__}", + help="Print version and exit.", + ) + + # + # developer options + # + parser.add_argument( + "--backtrace", + action="store_true", + help="DEVELOPER: show exception backtraces as extra " "debugging output", + ) + + parser.add_argument( + "-d", + "--debug", + action="store_true", + default=False, + help="DEVELOPER: output additional debugging " + "information to the screen and log file.", + ) + + return parser diff --git a/git_fleximod/git_fleximod.py b/git_fleximod/git_fleximod.py new file mode 100755 index 0000000000..f080513a52 --- /dev/null +++ b/git_fleximod/git_fleximod.py @@ -0,0 +1,605 @@ +#!/usr/bin/env python +import sys + +MIN_PYTHON = (3, 7) +if sys.version_info < MIN_PYTHON: + sys.exit("Python %s.%s or later is required." % MIN_PYTHON) + +import os +import shutil +import logging +import textwrap +from git_fleximod import utils +from git_fleximod import cli +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules +from configparser import NoOptionError + +# logger variable is global +logger = None + + +def fxrequired_allowed_values(): + return ["ToplevelRequired", "ToplevelOptional", "AlwaysRequired", "AlwaysOptional"] + + +def commandline_arguments(args=None): + parser = cli.get_parser() + + if args: + options = parser.parse_args(args) + else: + options = parser.parse_args() + + # explicitly listing a component overrides the optional flag + if options.optional or options.components: + fxrequired = [ + "ToplevelRequired", + "ToplevelOptional", + "AlwaysRequired", + "AlwaysOptional", + ] + else: + fxrequired = ["ToplevelRequired", "AlwaysRequired"] + + action = options.action + if not action: + action = "update" + handlers = [logging.StreamHandler()] + + if options.debug: + try: + open("fleximod.log", "w") + except PermissionError: + sys.exit("ABORT: Could not write file fleximod.log") + level = logging.DEBUG + handlers.append(logging.FileHandler("fleximod.log")) + elif options.verbose: + level = logging.INFO + else: + level = logging.WARNING + # Configure the root logger + logging.basicConfig( + level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers + ) + + if hasattr(options, "version"): + exit() + + return ( + options.path, + options.gitmodules, + fxrequired, + options.components, + options.exclude, + options.force, + action, + ) + + +def submodule_sparse_checkout(root_dir, name, url, path, sparsefile, tag="master"): + """ + This function performs a sparse checkout of a git submodule. It does so by first creating the .git/info/sparse-checkout fileq + in the submodule and then checking out the desired tag. If the submodule is already checked out, it will not be checked out again. + Creating the sparse-checkout file first prevents the entire submodule from being checked out and then removed. This is important + because the submodule may have a large number of files and checking out the entire submodule and then removing it would be time + and disk space consuming. + + Parameters: + root_dir (str): The root directory for the git operation. + name (str): The name of the submodule. + url (str): The URL of the submodule. + path (str): The path to the submodule. + sparsefile (str): The sparse file for the submodule. + tag (str, optional): The tag to checkout. Defaults to "master". + + Returns: + None + """ + logger.info("Called sparse_checkout for {}".format(name)) + rgit = GitInterface(root_dir, logger) + superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") + if superroot: + gitroot = superroot.strip() + else: + gitroot = root_dir.strip() + assert os.path.isdir(os.path.join(gitroot, ".git")) + # first create the module directory + if not os.path.isdir(os.path.join(root_dir, path)): + os.makedirs(os.path.join(root_dir, path)) + + # initialize a new git repo and set the sparse checkout flag + sprep_repo = os.path.join(root_dir, path) + sprepo_git = GitInterface(sprep_repo, logger) + if os.path.exists(os.path.join(sprep_repo, ".git")): + try: + logger.info("Submodule {} found".format(name)) + chk = sprepo_git.config_get_value("core", "sparseCheckout") + if chk == "true": + logger.info("Sparse submodule {} already checked out".format(name)) + return + except NoOptionError: + logger.debug("Sparse submodule {} not present".format(name)) + except Exception as e: + utils.fatal_error("Unexpected error {} occured.".format(e)) + + sprepo_git.config_set_value("core", "sparseCheckout", "true") + + # set the repository remote + + logger.info("Setting remote origin in {}/{}".format(root_dir, path)) + status = sprepo_git.git_operation("remote", "-v") + if url not in status: + sprepo_git.git_operation("remote", "add", "origin", url) + + topgit = os.path.join(gitroot, ".git") + + if gitroot != root_dir and os.path.isfile(os.path.join(root_dir, ".git")): + with open(os.path.join(root_dir, ".git")) as f: + gitpath = os.path.relpath( + os.path.join(root_dir, f.read().split()[1]), + start=os.path.join(root_dir, path), + ) + topgit = os.path.join(gitpath, "modules") + else: + topgit = os.path.relpath( + os.path.join(root_dir, ".git", "modules"), + start=os.path.join(root_dir, path), + ) + + with utils.pushd(sprep_repo): + if not os.path.isdir(topgit): + os.makedirs(topgit) + topgit += os.sep + name + + if os.path.isdir(os.path.join(root_dir, path, ".git")): + with utils.pushd(sprep_repo): + shutil.move(".git", topgit) + with open(".git", "w") as f: + f.write("gitdir: " + os.path.relpath(topgit)) + # assert(os.path.isdir(os.path.relpath(topgit, start=sprep_repo))) + gitsparse = os.path.abspath(os.path.join(topgit, "info", "sparse-checkout")) + if os.path.isfile(gitsparse): + logger.warning( + "submodule {} is already initialized {}".format(name, topgit) + ) + return + + with utils.pushd(sprep_repo): + shutil.copy(sparsefile, gitsparse) + + # Finally checkout the repo + sprepo_git.git_operation("fetch", "origin", "--tags") + sprepo_git.git_operation("checkout", tag) + + print(f"Successfully checked out {name:>20} at {tag}") + rgit.config_set_value(f'submodule "{name}"', "active", "true") + rgit.config_set_value(f'submodule "{name}"', "url", url) + + +def single_submodule_checkout( + root, name, path, url=None, tag=None, force=False, optional=False +): + """ + This function checks out a single git submodule. + + Parameters: + root (str): The root directory for the git operation. + name (str): The name of the submodule. + path (str): The path to the submodule. + url (str, optional): The URL of the submodule. Defaults to None. + tag (str, optional): The tag to checkout. Defaults to None. + force (bool, optional): If set to True, forces the checkout operation. Defaults to False. + optional (bool, optional): If set to True, the submodule is considered optional. Defaults to False. + + Returns: + None + """ + # function implementation... + git = GitInterface(root, logger) + repodir = os.path.join(root, path) + logger.info("Checkout {} into {}/{}".format(name, root, path)) + # if url is provided update to the new url + tmpurl = None + repo_exists = False + if os.path.exists(os.path.join(repodir, ".git")): + logger.info("Submodule {} already checked out".format(name)) + repo_exists = True + # Look for a .gitmodules file in the newly checkedout repo + if not repo_exists and url: + # ssh urls cause problems for those who dont have git accounts with ssh keys defined + # but cime has one since e3sm prefers ssh to https, because the .gitmodules file was + # opened with a GitModules object we don't need to worry about restoring the file here + # it will be done by the GitModules class + if url.startswith("git@"): + tmpurl = url + url = url.replace("git@github.com:", "https://github.com/") + git.git_operation("clone", url, path) + smgit = GitInterface(repodir, logger) + if not tag: + tag = smgit.git_operation("describe", "--tags", "--always").rstrip() + smgit.git_operation("checkout", tag) + # Now need to move the .git dir to the submodule location + rootdotgit = os.path.join(root, ".git") + if os.path.isfile(rootdotgit): + with open(rootdotgit) as f: + line = f.readline() + if line.startswith("gitdir: "): + rootdotgit = line[8:].rstrip() + + newpath = os.path.abspath(os.path.join(root, rootdotgit, "modules", name)) + if os.path.exists(newpath): + shutil.rmtree(os.path.join(repodir, ".git")) + else: + shutil.move(os.path.join(repodir, ".git"), newpath) + + with open(os.path.join(repodir, ".git"), "w") as f: + f.write("gitdir: " + os.path.relpath(newpath, start=repodir)) + + if not os.path.exists(repodir): + parent = os.path.dirname(repodir) + if not os.path.isdir(parent): + os.makedirs(parent) + git.git_operation("submodule", "add", "--name", name, "--", url, path) + + if not repo_exists or not tmpurl: + git.git_operation("submodule", "update", "--init", "--", path) + + if os.path.exists(os.path.join(repodir, ".gitmodules")): + # recursively handle this checkout + print(f"Recursively checking out submodules of {name}") + gitmodules = GitModules(logger, confpath=repodir) + requiredlist = ["AlwaysRequired"] + if optional: + requiredlist.append("AlwaysOptional") + submodules_checkout(gitmodules, repodir, requiredlist, force=force) + if not os.path.exists(os.path.join(repodir, ".git")): + utils.fatal_error( + f"Failed to checkout {name} {repo_exists} {tmpurl} {repodir} {path}" + ) + + if tmpurl: + print(git.git_operation("restore", ".gitmodules")) + + return + + +def submodules_status(gitmodules, root_dir, toplevel=False): + testfails = 0 + localmods = 0 + needsupdate = 0 + for name in gitmodules.sections(): + path = gitmodules.get(name, "path") + tag = gitmodules.get(name, "fxtag") + required = gitmodules.get(name, "fxrequired") + level = required and "Toplevel" in required + if not path: + utils.fatal_error("No path found in .gitmodules for {}".format(name)) + newpath = os.path.join(root_dir, path) + logger.debug("newpath is {}".format(newpath)) + if not os.path.exists(os.path.join(newpath, ".git")): + rootgit = GitInterface(root_dir, logger) + # submodule commands use path, not name + url = gitmodules.get(name, "url") + url = url.replace("git@github.com:", "https://github.com/") + tags = rootgit.git_operation("ls-remote", "--tags", url) + atag = None + needsupdate += 1 + if not toplevel and level: + continue + for htag in tags.split("\n"): + if tag and tag in htag: + atag = (htag.split()[1])[10:] + break + if tag and tag == atag: + print(f"e {name:>20} not checked out, aligned at tag {tag}") + elif tag: + ahash = rootgit.git_operation( + "submodule", "status", "{}".format(path) + ).rstrip() + ahash = ahash[1 : len(tag) + 1] + if tag == ahash: + print(f"e {name:>20} not checked out, aligned at hash {ahash}") + else: + print( + f"e {name:>20} not checked out, out of sync at tag {atag}, expected tag is {tag}" + ) + testfails += 1 + else: + print(f"e {name:>20} has no fxtag defined in .gitmodules") + testfails += 1 + else: + with utils.pushd(newpath): + git = GitInterface(newpath, logger) + atag = git.git_operation("describe", "--tags", "--always").rstrip() + part = git.git_operation("status").partition("\n")[0] + # fake hash to initialize + ahash = "xxxx" + if part: + ahash = part.split()[-1] + if tag and atag == tag: + print(f" {name:>20} at tag {tag}") + elif tag and ahash[: len(tag)] == tag: + print(f" {name:>20} at hash {ahash}") + elif atag == ahash: + print(f" {name:>20} at hash {ahash}") + elif tag: + print( + f"s {name:>20} {atag} {ahash} is out of sync with .gitmodules {tag}" + ) + testfails += 1 + needsupdate += 1 + else: + print( + f"e {name:>20} has no fxtag defined in .gitmodules, module at {atag}" + ) + testfails += 1 + + status = git.git_operation("status", "--ignore-submodules") + if "nothing to commit" not in status: + localmods = localmods + 1 + print("M" + textwrap.indent(status, " ")) + + return testfails, localmods, needsupdate + + +def submodules_update(gitmodules, root_dir, requiredlist, force): + _, localmods, needsupdate = submodules_status(gitmodules, root_dir) + + if localmods and not force: + local_mods_output() + return + if needsupdate == 0: + return + + for name in gitmodules.sections(): + fxtag = gitmodules.get(name, "fxtag") + path = gitmodules.get(name, "path") + url = gitmodules.get(name, "url") + logger.info( + "name={} path={} url={} fxtag={} requiredlist={}".format( + name, os.path.join(root_dir, path), url, fxtag, requiredlist + ) + ) + # if not os.path.exists(os.path.join(root_dir,path, ".git")): + fxrequired = gitmodules.get(name, "fxrequired") + assert fxrequired in fxrequired_allowed_values() + rgit = GitInterface(root_dir, logger) + superroot = rgit.git_operation("rev-parse", "--show-superproject-working-tree") + + fxsparse = gitmodules.get(name, "fxsparse") + + if ( + fxrequired + and (superroot and "Toplevel" in fxrequired) + or fxrequired not in requiredlist + ): + if "ToplevelOptional" == fxrequired: + print("Skipping optional component {}".format(name)) + continue + if fxsparse: + logger.debug( + "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( + root_dir, name, url, path, fxsparse, fxtag + ) + ) + submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) + else: + logger.info( + "Calling submodule_checkout({},{},{},{})".format( + root_dir, name, path, url + ) + ) + + single_submodule_checkout( + root_dir, + name, + path, + url=url, + tag=fxtag, + force=force, + optional=("AlwaysOptional" in requiredlist), + ) + + if os.path.exists(os.path.join(path, ".git")): + submoddir = os.path.join(root_dir, path) + with utils.pushd(submoddir): + git = GitInterface(submoddir, logger) + # first make sure the url is correct + upstream = git.git_operation("ls-remote", "--get-url").rstrip() + newremote = "origin" + if upstream != url: + # TODO - this needs to be a unique name + remotes = git.git_operation("remote", "-v") + if url in remotes: + for line in remotes: + if url in line and "fetch" in line: + newremote = line.split()[0] + break + else: + i = 0 + while newremote in remotes: + i = i + 1 + newremote = f"newremote.{i:02d}" + git.git_operation("remote", "add", newremote, url) + + tags = git.git_operation("tag", "-l") + if fxtag and fxtag not in tags: + git.git_operation("fetch", newremote, "--tags") + atag = git.git_operation("describe", "--tags", "--always").rstrip() + if fxtag and fxtag != atag: + try: + git.git_operation("checkout", fxtag) + print(f"{name:>20} updated to {fxtag}") + except Exception as error: + print(error) + elif not fxtag: + print(f"No fxtag found for submodule {name:>20}") + else: + print(f"{name:>20} up to date.") + + +def local_mods_output(): + text = """\ + The submodules labeled with 'M' above are not in a clean state. + The following are options for how to proceed: + (1) Go into each submodule which is not in a clean state and issue a 'git status' + Either revert or commit your changes so that the submodule is in a clean state. + (2) use the --force option to git-fleximod + (3) you can name the particular submodules to update using the git-fleximod command line + (4) As a last resort you can remove the submodule (via 'rm -fr [directory]') + then rerun git-fleximod update. +""" + print(text) + + +# checkout is done by update if required so this function may be depricated +def submodules_checkout(gitmodules, root_dir, requiredlist, force=False): + """ + This function checks out all git submodules based on the provided parameters. + + Parameters: + gitmodules (ConfigParser): The gitmodules configuration. + root_dir (str): The root directory for the git operation. + requiredlist (list): The list of required modules. + force (bool, optional): If set to True, forces the checkout operation. Defaults to False. + + Returns: + None + """ + # function implementation... + print("") + _, localmods, needsupdate = submodules_status(gitmodules, root_dir) + if localmods and not force: + local_mods_output() + return + if not needsupdate: + return + for name in gitmodules.sections(): + fxrequired = gitmodules.get(name, "fxrequired") + fxsparse = gitmodules.get(name, "fxsparse") + fxtag = gitmodules.get(name, "fxtag") + path = gitmodules.get(name, "path") + url = gitmodules.get(name, "url") + if fxrequired and fxrequired not in requiredlist: + if "Optional" in fxrequired: + print("Skipping optional component {}".format(name)) + continue + + if fxsparse: + logger.debug( + "Callng submodule_sparse_checkout({}, {}, {}, {}, {}, {}".format( + root_dir, name, url, path, fxsparse, fxtag + ) + ) + submodule_sparse_checkout(root_dir, name, url, path, fxsparse, tag=fxtag) + else: + logger.debug( + "Calling submodule_checkout({},{},{})".format(root_dir, name, path) + ) + single_submodule_checkout( + root_dir, + name, + path, + url=url, + tag=fxtag, + force=force, + optional="AlwaysOptional" in requiredlist, + ) + + +def submodules_test(gitmodules, root_dir): + """ + This function tests the git submodules based on the provided parameters. + + It first checks that fxtags are present and in sync with submodule hashes. + Then it ensures that urls are consistent with fxurls (not forks and not ssh) + and that sparse checkout files exist. + + Parameters: + gitmodules (ConfigParser): The gitmodules configuration. + root_dir (str): The root directory for the git operation. + + Returns: + int: The number of test failures. + """ + # First check that fxtags are present and in sync with submodule hashes + testfails, localmods, needsupdate = submodules_status(gitmodules, root_dir) + print("") + # Then make sure that urls are consistant with fxurls (not forks and not ssh) + # and that sparse checkout files exist + for name in gitmodules.sections(): + url = gitmodules.get(name, "url") + fxurl = gitmodules.get(name, "fxDONOTMODIFYurl") + fxsparse = gitmodules.get(name, "fxsparse") + path = gitmodules.get(name, "path") + fxurl = fxurl[:-4] if fxurl.endswith(".git") else fxurl + url = url[:-4] if url.endswith(".git") else url + if not fxurl or url.lower() != fxurl.lower(): + print(f"{name:>20} url {url} not in sync with required {fxurl}") + testfails += 1 + if fxsparse and not os.path.isfile(os.path.join(root_dir, path, fxsparse)): + print(f"{name:>20} sparse checkout file {fxsparse} not found") + testfails += 1 + return testfails + localmods + needsupdate + + +def main(): + ( + root_dir, + file_name, + fxrequired, + includelist, + excludelist, + force, + action, + ) = commandline_arguments() + # Get a logger for the package + global logger + logger = logging.getLogger(__name__) + + logger.info("action is {} root_dir={} file_name={}".format(action, root_dir, file_name)) + + if not os.path.isfile(os.path.join(root_dir, file_name)): + file_path = utils.find_upwards(root_dir, file_name) + + if file_path is None: + utils.fatal_error( + "No {} found in {} or any of it's parents".format(file_name, root_dir) + ) + + root_dir = os.path.dirname(file_path) + logger.info( + "root_dir is {} includelist={} excludelist={}".format( + root_dir, includelist, excludelist + ) + ) + gitmodules = GitModules( + logger, + confpath=root_dir, + conffile=file_name, + includelist=includelist, + excludelist=excludelist, + ) + if not gitmodules.sections(): + sys.exit("No submodule components found") + retval = 0 + if action == "update": + submodules_update(gitmodules, root_dir, fxrequired, force) + elif action == "status": + tfails, lmods, updates = submodules_status(gitmodules, root_dir, toplevel=True) + if tfails + lmods + updates > 0: + print( + f" testfails = {tfails}, local mods = {lmods}, needs updates {updates}\n" + ) + if lmods > 0: + local_mods_output() + elif action == "test": + retval = submodules_test(gitmodules, root_dir) + else: + utils.fatal_error(f"unrecognized action request {action}") + return retval + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/git_fleximod/gitinterface.py b/git_fleximod/gitinterface.py new file mode 100644 index 0000000000..93ae38ecde --- /dev/null +++ b/git_fleximod/gitinterface.py @@ -0,0 +1,79 @@ +import os +import sys +from . import utils +from pathlib import Path + +class GitInterface: + def __init__(self, repo_path, logger): + logger.debug("Initialize GitInterface for {}".format(repo_path)) + if isinstance(repo_path, str): + self.repo_path = Path(repo_path).resolve() + elif isinstance(repo_path, Path): + self.repo_path = repo_path.resolve() + else: + raise TypeError("repo_path must be a str or Path object") + self.logger = logger + try: + import git + + self._use_module = True + try: + self.repo = git.Repo(str(self.repo_path)) # Initialize GitPython repo + except git.exc.InvalidGitRepositoryError: + self.git = git + self._init_git_repo() + msg = "Using GitPython interface to git" + except ImportError: + self._use_module = False + if not (self.repo_path / ".git").exists(): + self._init_git_repo() + msg = "Using shell interface to git" + self.logger.info(msg) + + def _git_command(self, operation, *args): + self.logger.info(operation) + if self._use_module and operation != "submodule": + try: + return getattr(self.repo.git, operation)(*args) + except Exception as e: + sys.exit(e) + else: + return ["git", "-C", str(self.repo_path), operation] + list(args) + + def _init_git_repo(self): + if self._use_module: + self.repo = self.git.Repo.init(str(self.repo_path)) + else: + command = ("git", "-C", str(self.repo_path), "init") + utils.execute_subprocess(command) + + # pylint: disable=unused-argument + def git_operation(self, operation, *args, **kwargs): + command = self._git_command(operation, *args) + self.logger.info(command) + if isinstance(command, list): + try: + return utils.execute_subprocess(command, output_to_caller=True) + except Exception as e: + sys.exit(e) + else: + return command + + def config_get_value(self, section, name): + if self._use_module: + config = self.repo.config_reader() + return config.get_value(section, name) + else: + cmd = ("git", "-C", str(self.repo_path), "config", "--get", f"{section}.{name}") + output = utils.execute_subprocess(cmd, output_to_caller=True) + return output.strip() + + def config_set_value(self, section, name, value): + if self._use_module: + with self.repo.config_writer() as writer: + writer.set_value(section, name, value) + writer.release() # Ensure changes are saved + else: + cmd = ("git", "-C", str(self.repo_path), "config", f"{section}.{name}", value) + self.logger.info(cmd) + utils.execute_subprocess(cmd, output_to_caller=True) diff --git a/git_fleximod/gitmodules.py b/git_fleximod/gitmodules.py new file mode 100644 index 0000000000..68c82d066f --- /dev/null +++ b/git_fleximod/gitmodules.py @@ -0,0 +1,97 @@ +import shutil +from pathlib import Path +from configparser import RawConfigParser, ConfigParser +from .lstripreader import LstripReader + + +class GitModules(RawConfigParser): + def __init__( + self, + logger, + confpath=Path.cwd(), + conffile=".gitmodules", + includelist=None, + excludelist=None, + ): + """ + confpath: Path to the directory containing the .gitmodules file (defaults to the current working directory). + conffile: Name of the configuration file (defaults to .gitmodules). + includelist: Optional list of submodules to include. + excludelist: Optional list of submodules to exclude. + """ + self.logger = logger + self.logger.debug( + "Creating a GitModules object {} {} {} {}".format( + confpath, conffile, includelist, excludelist + ) + ) + super().__init__() + self.conf_file = (Path(confpath) / Path(conffile)) + if self.conf_file.exists(): + self.read_file(LstripReader(str(self.conf_file)), source=conffile) + self.includelist = includelist + self.excludelist = excludelist + self.isdirty = False + + def reload(self): + self.clear() + if self.conf_file.exists(): + self.read_file(LstripReader(str(self.conf_file)), source=self.conf_file) + + + def set(self, name, option, value): + """ + Sets a configuration value for a specific submodule: + Ensures the appropriate section exists for the submodule. + Calls the parent class's set method to store the value. + """ + self.isdirty = True + self.logger.debug("set called {} {} {}".format(name, option, value)) + section = f'submodule "{name}"' + if not self.has_section(section): + self.add_section(section) + super().set(section, option, str(value)) + + # pylint: disable=redefined-builtin, arguments-differ + def get(self, name, option, raw=False, vars=None, fallback=None): + """ + Retrieves a configuration value for a specific submodule: + Uses the parent class's get method to access the value. + Handles potential errors if the section or option doesn't exist. + """ + self.logger.debug("get called {} {}".format(name, option)) + section = f'submodule "{name}"' + try: + return ConfigParser.get( + self, section, option, raw=raw, vars=vars, fallback=fallback + ) + except ConfigParser.NoOptionError: + return None + + def save(self): + if self.isdirty: + self.logger.info("Writing {}".format(self.conf_file)) + with open(self.conf_file, "w") as fd: + self.write(fd) + self.isdirty = False + + def __del__(self): + self.save() + + def sections(self): + """Strip the submodule part out of section and just use the name""" + self.logger.debug("calling GitModules sections iterator") + names = [] + for section in ConfigParser.sections(self): + name = section[11:-1] + if self.includelist and name not in self.includelist: + continue + if self.excludelist and name in self.excludelist: + continue + names.append(name) + return names + + def items(self, name, raw=False, vars=None): + self.logger.debug("calling GitModules items for {}".format(name)) + section = f'submodule "{name}"' + return ConfigParser.items(section, raw=raw, vars=vars) diff --git a/git_fleximod/lstripreader.py b/git_fleximod/lstripreader.py new file mode 100644 index 0000000000..01d5580ee8 --- /dev/null +++ b/git_fleximod/lstripreader.py @@ -0,0 +1,43 @@ +class LstripReader(object): + "LstripReader formats .gitmodules files to be acceptable for configparser" + + def __init__(self, filename): + with open(filename, "r") as infile: + lines = infile.readlines() + self._lines = list() + self._num_lines = len(lines) + self._index = 0 + for line in lines: + self._lines.append(line.lstrip()) + + def readlines(self): + """Return all the lines from this object's file""" + return self._lines + + def readline(self, size=-1): + """Format and return the next line or raise StopIteration""" + try: + line = self.next() + except StopIteration: + line = "" + + if (size > 0) and (len(line) < size): + return line[0:size] + + return line + + def __iter__(self): + """Begin an iteration""" + self._index = 0 + return self + + def next(self): + """Return the next line or raise StopIteration""" + if self._index >= self._num_lines: + raise StopIteration + + self._index = self._index + 1 + return self._lines[self._index - 1] + + def __next__(self): + return self.next() diff --git a/git_fleximod/metoflexi.py b/git_fleximod/metoflexi.py new file mode 100755 index 0000000000..cc347db2dd --- /dev/null +++ b/git_fleximod/metoflexi.py @@ -0,0 +1,236 @@ +#!/usr/bin/env python +from configparser import ConfigParser +import sys +import shutil +from pathlib import Path +import argparse +import logging +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules +from git_fleximod import utils + +logger = None + +def find_root_dir(filename=".git"): + d = Path.cwd() + root = Path(d.root) + while d != root: + attempt = d / filename + if attempt.is_dir(): + return d + d = d.parent + return None + + +def get_parser(): + description = """ + %(prog)s manages checking out groups of gitsubmodules with addtional support for Earth System Models + """ + parser = argparse.ArgumentParser( + description=description, formatter_class=argparse.RawDescriptionHelpFormatter + ) + + parser.add_argument('-e', '--externals', nargs='?', + default='Externals.cfg', + help='The externals description filename. ' + 'Default: %(default)s.') + + parser.add_argument( + "-C", + "--path", + default=find_root_dir(), + help="Toplevel repository directory. Defaults to top git directory relative to current.", + ) + + parser.add_argument( + "-g", + "--gitmodules", + nargs="?", + default=".gitmodules", + help="The submodule description filename. " "Default: %(default)s.", + ) + parser.add_argument( + "-v", + "--verbose", + action="count", + default=0, + help="Output additional information to " + "the screen and log file. This flag can be " + "used up to two times, increasing the " + "verbosity level each time.", + ) + parser.add_argument( + "-d", + "--debug", + action="store_true", + default=False, + help="DEVELOPER: output additional debugging " + "information to the screen and log file.", + ) + + return parser + +def commandline_arguments(args=None): + parser = get_parser() + + options = parser.parse_args(args) + handlers = [logging.StreamHandler()] + + if options.debug: + try: + open("fleximod.log", "w") + except PermissionError: + sys.exit("ABORT: Could not write file fleximod.log") + level = logging.DEBUG + handlers.append(logging.FileHandler("fleximod.log")) + elif options.verbose: + level = logging.INFO + else: + level = logging.WARNING + # Configure the root logger + logging.basicConfig( + level=level, format="%(name)s - %(levelname)s - %(message)s", handlers=handlers + ) + + return( + options.path, + options.gitmodules, + options.externals + ) + +class ExternalRepoTranslator: + """ + Translates external repositories configured in an INI-style externals file. + """ + + def __init__(self, rootpath, gitmodules, externals): + self.rootpath = rootpath + if gitmodules: + self.gitmodules = GitModules(logger, confpath=rootpath) + self.externals = (rootpath / Path(externals)).resolve() + print(f"Translating {self.externals}") + self.git = GitInterface(rootpath, logger) + +# def __del__(self): +# if (self.rootpath / "save.gitignore"): + + + def translate_single_repo(self, section, tag, url, path, efile, hash_, sparse, protocol): + """ + Translates a single repository based on configuration details. + + Args: + rootpath (str): Root path of the main repository. + gitmodules (str): Path to the .gitmodules file. + tag (str): The tag to use for the external repository. + url (str): The URL of the external repository. + path (str): The relative path within the main repository for the external repository. + efile (str): The external file or file containing submodules. + hash_ (str): The commit hash to checkout (if applicable). + sparse (str): Boolean indicating whether to use sparse checkout (if applicable). + protocol (str): The protocol to use (e.g., 'git', 'http'). + """ + assert protocol != "svn", "SVN protocol is not currently supported" + print(f"Translating repository {section}") + if efile: + file_path = Path(path) / Path(efile) + newroot = (self.rootpath / file_path).parent.resolve() + if not newroot.exists(): + newroot.mkdir(parents=True) + logger.info("Newroot is {}".format(newroot)) + newt = ExternalRepoTranslator(newroot, ".gitmodules", efile) + newt.translate_repo() + if protocol == "externals_only": + if tag: + self.gitmodules.set(section, "fxtag", tag) + if hash_: + self.gitmodules.set(section, "fxtag", hash_) + + self.gitmodules.set(section, "fxDONOTUSEurl", url) + if sparse: + self.gitmodules.set(section, "fxsparse", sparse) + self.gitmodules.set(section, "fxrequired", "ToplevelRequired") + else: + newpath = (self.rootpath / Path(path)) + if newpath.exists(): + shutil.rmtree(newpath) + logger.info("Creating directory {}".format(newpath)) + newpath.mkdir(parents=True) + if tag: + logger.info("cloning {}".format(section)) + try: + self.git.git_operation("clone", "-b", tag, "--depth", "1", url, path) + except: + self.git.git_operation("clone", url, path) + with utils.pushd(newpath): + ngit = GitInterface(newpath, logger) + ngit.git_operation("checkout", tag) + if hash_: + self.git.git_operation("clone", url, path) + git = GitInterface(newpath, logger) + git.git_operation("fetch", "origin") + git.git_operation("checkout", hash_) + if sparse: + print("setting as sparse submodule {}".format(section)) + sparsefile = (newpath / Path(sparse)) + newfile = (newpath / ".git" / "info" / "sparse-checkout") + print(f"sparsefile {sparsefile} newfile {newfile}") + shutil.copy(sparsefile, newfile) + + logger.info("adding submodule {}".format(section)) + self.gitmodules.save() + self.git.git_operation("submodule", "add", "-f", "--name", section, url, path) + self.git.git_operation("submodule","absorbgitdirs") + self.gitmodules.reload() + if tag: + self.gitmodules.set(section, "fxtag", tag) + if hash_: + self.gitmodules.set(section, "fxtag", hash_) + + self.gitmodules.set(section, "fxDONOTUSEurl", url) + if sparse: + self.gitmodules.set(section, "fxsparse", sparse) + self.gitmodules.set(section, "fxrequired", "ToplevelRequired") + + + def translate_repo(self): + """ + Translates external repositories defined within an external file. + + Args: + rootpath (str): Root path of the main repository. + gitmodules (str): Path to the .gitmodules file. + external_file (str): The path to the external file containing repository definitions. + """ + econfig = ConfigParser() + econfig.read((self.rootpath / Path(self.externals))) + + for section in econfig.sections(): + if section == "externals_description": + logger.info("skipping section {}".format(section)) + return + logger.info("Translating section {}".format(section)) + tag = econfig.get(section, "tag", raw=False, fallback=None) + url = econfig.get(section, "repo_url", raw=False, fallback=None) + path = econfig.get(section, "local_path", raw=False, fallback=None) + efile = econfig.get(section, "externals", raw=False, fallback=None) + hash_ = econfig.get(section, "hash", raw=False, fallback=None) + sparse = econfig.get(section, "sparse", raw=False, fallback=None) + protocol = econfig.get(section, "protocol", raw=False, fallback=None) + + self.translate_single_repo(section, tag, url, path, efile, hash_, sparse, protocol) + + + +def _main(): + rootpath, gitmodules, externals = commandline_arguments() + global logger + logger = logging.getLogger(__name__) + with utils.pushd(rootpath): + t = ExternalRepoTranslator(Path(rootpath), gitmodules, externals) + logger.info("Translating {}".format(rootpath)) + t.translate_repo() + + +if __name__ == "__main__": + sys.exit(_main()) diff --git a/git_fleximod/utils.py b/git_fleximod/utils.py new file mode 100644 index 0000000000..7cc1de38cc --- /dev/null +++ b/git_fleximod/utils.py @@ -0,0 +1,365 @@ +#!/usr/bin/env python3 +""" +Common public utilities for manic package + +""" + +import logging +import os +import subprocess +import sys +from threading import Timer +from pathlib import Path + +LOCAL_PATH_INDICATOR = "." +# --------------------------------------------------------------------- +# +# functions to massage text for output and other useful utilities +# +# --------------------------------------------------------------------- +from contextlib import contextmanager + + +@contextmanager +def pushd(new_dir): + """context for chdir. usage: with pushd(new_dir)""" + previous_dir = os.getcwd() + os.chdir(new_dir) + try: + yield + finally: + os.chdir(previous_dir) + + +def log_process_output(output): + """Log each line of process output at debug level so it can be + filtered if necessary. By default, output is a single string, and + logging.debug(output) will only put log info heading on the first + line. This makes it hard to filter with grep. + + """ + output = output.split("\n") + for line in output: + logging.debug(line) + + +def printlog(msg, **kwargs): + """Wrapper script around print to ensure that everything printed to + the screen also gets logged. + + """ + logging.info(msg) + if kwargs: + print(msg, **kwargs) + else: + print(msg) + sys.stdout.flush() + + +def find_upwards(root_dir, filename): + """Find a file in root dir or any of it's parents""" + d = Path(root_dir) + root = Path(d.root) + while d != root: + attempt = d / filename + if attempt.exists(): + return attempt + d = d.parent + return None + + +def last_n_lines(the_string, n_lines, truncation_message=None): + """Returns the last n lines of the given string + + Args: + the_string: str + n_lines: int + truncation_message: str, optional + + Returns a string containing the last n lines of the_string + + If truncation_message is provided, the returned string begins with + the given message if and only if the string is greater than n lines + to begin with. + """ + + lines = the_string.splitlines(True) + if len(lines) <= n_lines: + return_val = the_string + else: + lines_subset = lines[-n_lines:] + str_truncated = "".join(lines_subset) + if truncation_message: + str_truncated = truncation_message + "\n" + str_truncated + return_val = str_truncated + + return return_val + + +def indent_string(the_string, indent_level): + """Indents the given string by a given number of spaces + + Args: + the_string: str + indent_level: int + + Returns a new string that is the same as the_string, except that + each line is indented by 'indent_level' spaces. + + In python3, this can be done with textwrap.indent. + """ + + lines = the_string.splitlines(True) + padding = " " * indent_level + lines_indented = [padding + line for line in lines] + return "".join(lines_indented) + + +# --------------------------------------------------------------------- +# +# error handling +# +# --------------------------------------------------------------------- + + +def fatal_error(message): + """ + Error output function + """ + logging.error(message) + raise RuntimeError("{0}ERROR: {1}".format(os.linesep, message)) + + +# --------------------------------------------------------------------- +# +# Data conversion / manipulation +# +# --------------------------------------------------------------------- +def str_to_bool(bool_str): + """Convert a sting representation of as boolean into a true boolean. + + Conversion should be case insensitive. + """ + value = None + str_lower = bool_str.lower() + if str_lower in ("true", "t"): + value = True + elif str_lower in ("false", "f"): + value = False + if value is None: + msg = ( + 'ERROR: invalid boolean string value "{0}". ' + 'Must be "true" or "false"'.format(bool_str) + ) + fatal_error(msg) + return value + + +REMOTE_PREFIXES = ["http://", "https://", "ssh://", "git@"] + + +def is_remote_url(url): + """check if the user provided a local file path instead of a + remote. If so, it must be expanded to an absolute + path. + + """ + remote_url = False + for prefix in REMOTE_PREFIXES: + if url.startswith(prefix): + remote_url = True + return remote_url + + +def split_remote_url(url): + """check if the user provided a local file path or a + remote. If remote, try to strip off protocol info. + + """ + remote_url = is_remote_url(url) + if not remote_url: + return url + + for prefix in REMOTE_PREFIXES: + url = url.replace(prefix, "") + + if "@" in url: + url = url.split("@")[1] + + if ":" in url: + url = url.split(":")[1] + + return url + + +def expand_local_url(url, field): + """check if the user provided a local file path instead of a + remote. If so, it must be expanded to an absolute + path. + + Note: local paths of LOCAL_PATH_INDICATOR have special meaning and + represent local copy only, don't work with the remotes. + + """ + remote_url = is_remote_url(url) + if not remote_url: + if url.strip() == LOCAL_PATH_INDICATOR: + pass + else: + url = os.path.expandvars(url) + url = os.path.expanduser(url) + if not os.path.isabs(url): + msg = ( + 'WARNING: Externals description for "{0}" contains a ' + "url that is not remote and does not expand to an " + "absolute path. Version control operations may " + "fail.\n\nurl={1}".format(field, url) + ) + printlog(msg) + else: + url = os.path.normpath(url) + return url + + +# --------------------------------------------------------------------- +# +# subprocess +# +# --------------------------------------------------------------------- + +# Give the user a helpful message if we detect that a command seems to +# be hanging. +_HANGING_SEC = 300 + + +def _hanging_msg(working_directory, command): + print( + """ + +Command '{command}' +from directory {working_directory} +has taken {hanging_sec} seconds. It may be hanging. + +The command will continue to run, but you may want to abort +manage_externals with ^C and investigate. A possible cause of hangs is +when svn or git require authentication to access a private +repository. On some systems, svn and git requests for authentication +information will not be displayed to the user. In this case, the program +will appear to hang. Ensure you can run svn and git manually and access +all repositories without entering your authentication information. + +""".format( + command=command, + working_directory=working_directory, + hanging_sec=_HANGING_SEC, + ) + ) + + +def execute_subprocess(commands, status_to_caller=False, output_to_caller=False): + """Wrapper around subprocess.check_output to handle common + exceptions. + + check_output runs a command with arguments and waits + for it to complete. + + check_output raises an exception on a nonzero return code. if + status_to_caller is true, execute_subprocess returns the subprocess + return code, otherwise execute_subprocess treats non-zero return + status as an error and raises an exception. + + """ + cwd = os.getcwd() + msg = "In directory: {0}\nexecute_subprocess running command:".format(cwd) + logging.info(msg) + commands_str = " ".join(str(element) for element in commands) + logging.info(commands_str) + return_to_caller = status_to_caller or output_to_caller + status = -1 + output = "" + hanging_timer = Timer( + _HANGING_SEC, + _hanging_msg, + kwargs={"working_directory": cwd, "command": commands_str}, + ) + hanging_timer.start() + try: + output = subprocess.check_output( + commands, stderr=subprocess.STDOUT, universal_newlines=True + ) + log_process_output(output) + status = 0 + except OSError as error: + msg = failed_command_msg( + "Command execution failed. Does the executable exist?", commands + ) + logging.error(error) + fatal_error(msg) + except ValueError as error: + msg = failed_command_msg( + "DEV_ERROR: Invalid arguments trying to run subprocess", commands + ) + logging.error(error) + fatal_error(msg) + except subprocess.CalledProcessError as error: + # Only report the error if we are NOT returning to the + # caller. If we are returning to the caller, then it may be a + # simple status check. If returning, it is the callers + # responsibility determine if an error occurred and handle it + # appropriately. + if not return_to_caller: + msg_context = ( + "Process did not run successfully; " + "returned status {0}".format(error.returncode) + ) + msg = failed_command_msg(msg_context, commands, output=error.output) + logging.error(error) + logging.error(msg) + log_process_output(error.output) + fatal_error(msg) + status = error.returncode + finally: + hanging_timer.cancel() + + if status_to_caller and output_to_caller: + ret_value = (status, output) + elif status_to_caller: + ret_value = status + elif output_to_caller: + ret_value = output + else: + ret_value = None + + return ret_value + + +def failed_command_msg(msg_context, command, output=None): + """Template for consistent error messages from subprocess calls. + + If 'output' is given, it should provide the output from the failed + command + """ + + if output: + output_truncated = last_n_lines( + output, 20, truncation_message="[... Output truncated for brevity ...]" + ) + errmsg = ( + "Failed with output:\n" + indent_string(output_truncated, 4) + "\nERROR: " + ) + else: + errmsg = "" + + command_str = " ".join(command) + errmsg += """In directory + {cwd} +{context}: + {command} +""".format( + cwd=os.getcwd(), context=msg_context, command=command_str + ) + + if output: + errmsg += "See above for output from failed command.\n" + + return errmsg diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000000..b59ed3942c --- /dev/null +++ b/poetry.lock @@ -0,0 +1,693 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "alabaster" +version = "0.7.13" +description = "A configurable sidebar-enabled Sphinx theme" +optional = false +python-versions = ">=3.6" +files = [ + {file = "alabaster-0.7.13-py3-none-any.whl", hash = "sha256:1ee19aca801bbabb5ba3f5f258e4422dfa86f82f3e9cefb0859b283cdd7f62a3"}, + {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, +] + +[[package]] +name = "babel" +version = "2.14.0" +description = "Internationalization utilities" +optional = false +python-versions = ">=3.7" +files = [ + {file = "Babel-2.14.0-py3-none-any.whl", hash = "sha256:efb1a25b7118e67ce3a259bed20545c29cb68be8ad2c784c83689981b7a57287"}, + {file = "Babel-2.14.0.tar.gz", hash = "sha256:6919867db036398ba21eb5c7a0f6b28ab8cbc3ae7a73a44ebe34ae74a4e7d363"}, +] + +[package.dependencies] +pytz = {version = ">=2015.7", markers = "python_version < \"3.9\""} + +[package.extras] +dev = ["freezegun (>=1.0,<2.0)", "pytest (>=6.0)", "pytest-cov"] + +[[package]] +name = "certifi" +version = "2024.2.2" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, + {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.3.2" +description = "The Real First Universal Charset Detector. 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+readme = "README.md" +homepage = "https://github.com/jedwards4b/git-fleximod" +keywords = ["git", "submodule", "sparse-checkout"] +packages = [ +{ include = "git_fleximod"}, +{ include = "doc"}, +] + +[tool.poetry.scripts] +git-fleximod = "git_fleximod.git_fleximod:main" +me2flexi = "git_fleximod.metoflexi:_main" +fsspec = "fsspec.fuse:main" + +[tool.poetry.dependencies] +python = "^3.8" +GitPython = "^3.1.0" +sphinx = "^5.0.0" +fsspec = "^2023.12.2" +wheel = "^0.42.0" +pytest = "^8.0.0" +pyfakefs = "^5.3.5" + +[tool.poetry.urls] +"Bug Tracker" = "https://github.com/jedwards4b/git-fleximod/issues" + +[tool.pytest.ini_options] +markers = [ + "skip_after_first: only run on first iteration" +] + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" + diff --git a/tbump.toml b/tbump.toml new file mode 100644 index 0000000000..e644fc4d24 --- /dev/null +++ b/tbump.toml @@ -0,0 +1,43 @@ +# Uncomment this if your project is hosted on GitHub: +github_url = "https://github.com/jedwards4b/git-fleximod/" + +[version] +current = "0.7.5" + +# Example of a semver regexp. +# Make sure this matches current_version before +# using tbump +regex = ''' + (?P\d+) + \. + (?P\d+) + \. + (?P\d+) + ''' + +[git] +message_template = "Bump to {new_version}" +tag_template = "v{new_version}" + +# For each file to patch, add a [[file]] config +# section containing the path of the file, relative to the +# tbump.toml location. +[[file]] +src = "git_fleximod/cli.py" + +[[file]] +src = "pyproject.toml" + +# You can specify a list of commands to +# run after the files have been patched +# and before the git commit is made + +# [[before_commit]] +# name = "check changelog" +# cmd = "grep -q {new_version} Changelog.rst" + +# Or run some commands after the git tag and the branch +# have been pushed: +# [[after_push]] +# name = "publish" +# cmd = "./publish.sh" diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000000..4d4c66c78e --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1,3 @@ +import sys, os + +sys.path.append(os.path.join(os.path.dirname(__file__), os.path.pardir, "src")) diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000000..942a0efb97 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1,138 @@ +import pytest +from git_fleximod.gitinterface import GitInterface +import os +import subprocess +import logging +from pathlib import Path + +@pytest.fixture(scope='session') +def logger(): + logging.basicConfig( + level=logging.INFO, format="%(name)s - %(levelname)s - %(message)s", handlers=[logging.StreamHandler()] + ) + logger = logging.getLogger(__name__) + return logger + +all_repos=[ + {"subrepo_path": "modules/test", + "submodule_name": "test_submodule", + "status1" : "test_submodule MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", + "status2" : "test_submodule at tag MPIserial_2.4.0", + "status3" : "test_submodule at tag MPIserial_2.4.0", + "status4" : "test_submodule at tag MPIserial_2.4.0", + "gitmodules_content" : """ + [submodule "test_submodule"] + path = modules/test + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.4.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = ToplevelRequired +"""}, + {"subrepo_path": "modules/test_optional", + "submodule_name": "test_optional", + "status1" : "test_optional MPIserial_2.5.0-3-gd82ce7c is out of sync with .gitmodules MPIserial_2.4.0", + "status2" : "test_optional at tag MPIserial_2.4.0", + "status3" : "test_optional not checked out, aligned at tag MPIserial_2.4.0", + "status4" : "test_optional at tag MPIserial_2.4.0", + "gitmodules_content": """ + [submodule "test_optional"] + path = modules/test_optional + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.4.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = ToplevelOptional +"""}, + {"subrepo_path": "modules/test_alwaysoptional", + "submodule_name": "test_alwaysoptional", + "status1" : "test_alwaysoptional MPIserial_2.3.0 is out of sync with .gitmodules e5cf35c", + "status2" : "test_alwaysoptional at hash e5cf35c", + "status3" : "test_alwaysoptional not checked out, out of sync at tag MPIserial_2.3.0", + "status4" : "test_alwaysoptional at hash e5cf35c", + "gitmodules_content": """ + [submodule "test_alwaysoptional"] + path = modules/test_alwaysoptional + url = https://github.com/ESMCI/mpi-serial.git + fxtag = e5cf35c + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = AlwaysOptional +"""}, + {"subrepo_path": "modules/test_sparse", + "submodule_name": "test_sparse", + "status1" : "test_sparse at tag MPIserial_2.5.0", + "status2" : "test_sparse at tag MPIserial_2.5.0", + "status3" : "test_sparse at tag MPIserial_2.5.0", + "status4" : "test_sparse at tag MPIserial_2.5.0", + "gitmodules_content": """ + [submodule "test_sparse"] + path = modules/test_sparse + url = https://github.com/ESMCI/mpi-serial.git + fxtag = MPIserial_2.5.0 + fxDONOTUSEurl = https://github.com/ESMCI/mpi-serial.git + fxrequired = AlwaysRequired + fxsparse = ../.sparse_file_list +"""}, +] +@pytest.fixture(params=all_repos) + +def shared_repos(request): + return request.param + +@pytest.fixture +def get_all_repos(): + return all_repos + +def write_sparse_checkout_file(fp): + sparse_content = """m4 +""" + fp.write_text(sparse_content) + +@pytest.fixture +def test_repo(shared_repos, tmp_path, logger): + subrepo_path = shared_repos["subrepo_path"] + submodule_name = shared_repos["submodule_name"] + test_dir = tmp_path / "testrepo" + test_dir.mkdir() + str_path = str(test_dir) + gitp = GitInterface(str_path, logger) + assert test_dir.joinpath(".git").is_dir() + (test_dir / "modules").mkdir() + if "sparse" in submodule_name: + (test_dir / subrepo_path).mkdir() + # Add the sparse checkout file + write_sparse_checkout_file(test_dir / "modules" / ".sparse_file_list") + gitp.git_operation("add","modules/.sparse_file_list") + else: + gitp = GitInterface(str(test_dir), logger) + gitp.git_operation("submodule", "add", "--depth","1","--name", submodule_name, "https://github.com/ESMCI/mpi-serial.git", subrepo_path) + assert test_dir.joinpath(".gitmodules").is_file() + gitp.git_operation("add",subrepo_path) + gitp.git_operation("commit","-a","-m","\"add submod\"") + test_dir2 = tmp_path / "testrepo2" + gitp.git_operation("clone",test_dir,test_dir2) + return test_dir2 + + +@pytest.fixture +def complex_repo(tmp_path, logger): + test_dir = tmp_path / "testcomplex" + test_dir.mkdir() + str_path = str(test_dir) + gitp = GitInterface(str_path, logger) + gitp.git_operation("remote", "add", "origin", "https://github.com/jedwards4b/fleximod-test2") + gitp.git_operation("fetch", "origin", "main") + gitp.git_operation("checkout", "main") + return test_dir + +@pytest.fixture +def git_fleximod(): + def _run_fleximod(path, args, input=None): + cmd = ["git", "fleximod"] + args.split() + result = subprocess.run(cmd, cwd=path, input=input, + stdout=subprocess.PIPE, stderr=subprocess.PIPE, + text=True) + if result.returncode: + print(result.stdout) + print(result.stderr) + return result + return _run_fleximod + diff --git a/tests/test_a_import.py b/tests/test_a_import.py new file mode 100644 index 0000000000..d5ca878de5 --- /dev/null +++ b/tests/test_a_import.py @@ -0,0 +1,8 @@ +# pylint: disable=unused-import +from git_fleximod import cli +from git_fleximod import utils +from git_fleximod.gitinterface import GitInterface +from git_fleximod.gitmodules import GitModules + +def test_import(): + print("here") diff --git a/tests/test_b_update.py b/tests/test_b_update.py new file mode 100644 index 0000000000..159f1cfae0 --- /dev/null +++ b/tests/test_b_update.py @@ -0,0 +1,26 @@ +import pytest +from pathlib import Path + +def test_basic_checkout(git_fleximod, test_repo, shared_repos): + # Prepare a simple .gitmodules + gm = shared_repos['gitmodules_content'] + file_path = (test_repo / ".gitmodules") + repo_name = shared_repos["submodule_name"] + repo_path = shared_repos["subrepo_path"] + + file_path.write_text(gm) + + # Run the command + result = git_fleximod(test_repo, f"update {repo_name}") + + # Assertions + assert result.returncode == 0 + assert Path(test_repo / repo_path).exists() # Did the submodule directory get created? + if "sparse" in repo_name: + assert Path(test_repo / f"{repo_path}/m4").exists() # Did the submodule sparse directory get created? + assert not Path(test_repo / f"{repo_path}/README").exists() # Did only the submodule sparse directory get created? + + status = git_fleximod(test_repo, f"status {repo_name}") + + assert shared_repos["status2"] in status.stdout + diff --git a/tests/test_c_required.py b/tests/test_c_required.py new file mode 100644 index 0000000000..89ab8d294d --- /dev/null +++ b/tests/test_c_required.py @@ -0,0 +1,30 @@ +import pytest +from pathlib import Path + +def test_required(git_fleximod, test_repo, shared_repos): + file_path = (test_repo / ".gitmodules") + gm = shared_repos["gitmodules_content"] + repo_name = shared_repos["submodule_name"] + if file_path.exists(): + with file_path.open("r") as f: + gitmodules_content = f.read() + # add the entry if it does not exist + if repo_name not in gitmodules_content: + file_path.write_text(gitmodules_content+gm) + # or if it is incomplete + elif gm not in gitmodules_content: + file_path.write_text(gm) + else: + file_path.write_text(gm) + result = git_fleximod(test_repo, "update") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status3"] in status.stdout + status = git_fleximod(test_repo, f"update --optional") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status4"] in status.stdout + status = git_fleximod(test_repo, f"update {repo_name}") + assert result.returncode == 0 + status = git_fleximod(test_repo, f"status {repo_name}") + assert shared_repos["status4"] in status.stdout diff --git a/tests/test_d_complex.py b/tests/test_d_complex.py new file mode 100644 index 0000000000..fdce516274 --- /dev/null +++ b/tests/test_d_complex.py @@ -0,0 +1,67 @@ +import pytest +from pathlib import Path +from git_fleximod.gitinterface import GitInterface + +def test_complex_checkout(git_fleximod, complex_repo, logger): + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) + assert("ToplevelRequired not checked out, aligned at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired not checked out, aligned at tag MPIserial_2.4.0" in status.stdout) + assert("Complex not checked out, aligned at tag testtag01" in status.stdout) + assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) + + # This should checkout and update test_submodule and complex_sub + result = git_fleximod(complex_repo, "update") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional not checked out, aligned at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + + # now check the complex_sub + root = (complex_repo / "modules" / "complex") + assert(not (root / "libraries" / "gptl" / ".git").exists()) + assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial" / ".git").exists()) + assert(not (root / "modules" / "mpi-serial2" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / "m4").exists()) + assert(not (root / "modules" / "mpi-sparse" / "README").exists()) + + # update a single optional submodule + + result = git_fleximod(complex_repo, "update ToplevelOptional") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + assert("AlwaysOptional not checked out, aligned at tag MPIserial_2.3.0" in status.stdout) + + + # Finally update optional + result = git_fleximod(complex_repo, "update --optional") + assert result.returncode == 0 + + status = git_fleximod(complex_repo, "status") + assert("ToplevelOptional at tag v5.3.2" in status.stdout) + assert("ToplevelRequired at tag MPIserial_2.5.0" in status.stdout) + assert("AlwaysRequired at tag MPIserial_2.4.0" in status.stdout) + assert("Complex at tag testtag01" in status.stdout) + assert("AlwaysOptional at tag MPIserial_2.3.0" in status.stdout) + + # now check the complex_sub + root = (complex_repo / "modules" / "complex" ) + assert(not (root / "libraries" / "gptl" / ".git").exists()) + assert(not (root / "libraries" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial" / ".git").exists()) + assert((root / "modules" / "mpi-serial2" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / ".git").exists()) + assert((root / "modules" / "mpi-sparse" / "m4").exists()) + assert(not (root / "modules" / "mpi-sparse" / "README").exists()) + + From c834c30292c96bf27b63a78c0ce01be66c14f64d Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Fri, 31 May 2024 11:28:29 -0600 Subject: [PATCH 17/19] Draft of ChangeLog/ChageSum --- doc/ChangeLog | 96 +++++++++++++++++++++++++++++++++++++++++++++++++++ doc/ChangeSum | 1 + 2 files changed, 97 insertions(+) diff --git a/doc/ChangeLog b/doc/ChangeLog index b2f14a2c01..ee2e861be7 100644 --- a/doc/ChangeLog +++ b/doc/ChangeLog @@ -1,4 +1,100 @@ =============================================================== +Tag name: ctsm5.2.007 +Originator(s): jedwards4b (Jim Edwards, UCAR/CGD) slevis (Sam Levis, UCAR/CGD) +Date: Fri 31 May 2024 11:24:29 AM MDT +One-line Summary: Rm manage_externals and update documentation accordingly + +Purpose and description of changes +---------------------------------- +#2443 Jim replaced this PR with the next one +#2559 Remove manage externals +#2564 Replace checkout_externals with git-fleximod in documentation + +Significant changes to scientifically-supported configurations +-------------------------------------------------------------- + +Does this tag change answers significantly for any of the following physics configurations? +(Details of any changes will be given in the "Answer changes" section below.) + + [Put an [X] in the box for any configuration with significant answer changes.] + +[ ] clm6_0 + +[ ] clm5_1 + +[ ] clm5_0 + +[ ] ctsm5_0-nwp + +[ ] clm4_5 + + +Bugs fixed +---------- +List of CTSM issues fixed (include CTSM Issue # and description) [one per line]: +Fixes #2537 Remove manage_externals stuff from run_sys_tests +Fixes #2536 Update documentation for git-fleximod +Fixes #2467 Remove references to cheyenne from the testlist + +Notes of particular relevance for users +--------------------------------------- +Caveats for users (e.g., need to interpolate initial conditions): + ./manage_externals/checkout_externals + is replaced with + ./bin/git-fleximod + +Changes to documentation: + Accordingly + +Testing summary: +---------------- + + [PASS means all tests PASS; OK means tests PASS other than expected fails.] + + build-namelist tests (if CLMBuildNamelist.pm has changed): + + derecho - PASS + + python testing (if python code has changed; see instructions in python/README.md; document testing done): + + derecho - PASS + + [If python code has changed and you are NOT running aux_clm (e.g., because the only changes are in python + code) then also run the clm_pymods test suite; this is a small subset of aux_clm that runs the system + tests impacted by python changes. The best way to do this, if you expect no changes from the last tag in + either model output or namelists, is: create sym links pointing to the last tag's baseline directory, + named with the upcoming tag; then run the clm_pymods test suite comparing against these baselines but NOT + doing their own baseline generation. If you are already running the full aux_clm then you do NOT need to + separately run the clm_pymods test suite, and you can remove the following line.] + + clm_pymods test suite on derecho - + + regular tests (aux_clm: https://github.com/ESCOMP/CTSM/wiki/System-Testing-Guide#pre-merge-system-testing): + + derecho ----- OK + izumi ------- OK + + any other testing (give details below): + + ctsm_sci + derecho ---- OK + +Answer changes +-------------- +Changes answers relative to baseline: No + +Other details +------------- +List any externals directories updated (cime, rtm, mosart, cism, fates, etc.): + JIM: What's the answer here? + +Pull Requests that document the changes (include PR ids): + https://github.com/ESCOMP/ctsm/pull/2443 + https://github.com/ESCOMP/ctsm/pull/2559 + https://github.com/ESCOMP/ctsm/pull/2564 + +=============================================================== +=============================================================== Tag name: ctsm5.2.006 Originator(s): slevis (Samuel Levis) Date: Tue 28 May 2024 03:14:18 PM MDT diff --git a/doc/ChangeSum b/doc/ChangeSum index 77bc8a426d..b3f1632571 100644 --- a/doc/ChangeSum +++ b/doc/ChangeSum @@ -1,5 +1,6 @@ Tag Who Date Summary ============================================================================================================================ + ctsm5.2.007 multiple 05/31/2024 Rm manage_externals and update documentation accordingly ctsm5.2.006 slevis 05/28/2024 Update externals to cesm2_3_beta17, remove mct, retire /test/tools ctsm5.2.005 erik 05/13/2024 Fix clm6_0 defaults and CESM testing issues, add tests to detect these problems ctsm5.2.004 multiple 05/09/2024 CTSM5.2 1979 fsurdat and 1979-2026 landuse ne0np4 files + two fixes From 9a82a3fb531de7f1d31578f51091b700bccc3651 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Fri, 31 May 2024 13:54:53 -0600 Subject: [PATCH 18/19] Replace manage_externals with git-fleximod in an error message --- .lib/git-fleximod/git_fleximod/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.lib/git-fleximod/git_fleximod/utils.py b/.lib/git-fleximod/git_fleximod/utils.py index 7cc1de38cc..64a2e70d98 100644 --- a/.lib/git-fleximod/git_fleximod/utils.py +++ b/.lib/git-fleximod/git_fleximod/utils.py @@ -241,7 +241,7 @@ def _hanging_msg(working_directory, command): has taken {hanging_sec} seconds. It may be hanging. The command will continue to run, but you may want to abort -manage_externals with ^C and investigate. A possible cause of hangs is +git-fleximod with ^C and investigate. A possible cause of hangs is when svn or git require authentication to access a private repository. On some systems, svn and git requests for authentication information will not be displayed to the user. In this case, the program From c9020ec5320013121b84e4abc03bc0cf5bab2133 Mon Sep 17 00:00:00 2001 From: Samuel Levis Date: Fri, 31 May 2024 13:57:53 -0600 Subject: [PATCH 19/19] Replace "externals directories" with "git submodules" in ChangeLogs --- doc/.ChangeLog_template | 2 +- doc/ChangeLog | 9 ++++++--- 2 files changed, 7 insertions(+), 4 deletions(-) diff --git a/doc/.ChangeLog_template b/doc/.ChangeLog_template index f6a6dbd2f8..60a7f49288 100644 --- a/doc/.ChangeLog_template +++ b/doc/.ChangeLog_template @@ -157,7 +157,7 @@ Other details ------------- [Remove any lines that don't apply. Remove entire section if nothing applies.] -List any externals directories updated (cime, rtm, mosart, cism, fates, etc.): +List any git submodules updated (cime, rtm, mosart, cism, fates, etc.): Pull Requests that document the changes (include PR ids): (https://github.com/ESCOMP/ctsm/pull) diff --git a/doc/ChangeLog b/doc/ChangeLog index ee2e861be7..8b6bb8f0d2 100644 --- a/doc/ChangeLog +++ b/doc/ChangeLog @@ -1,7 +1,7 @@ =============================================================== Tag name: ctsm5.2.007 Originator(s): jedwards4b (Jim Edwards, UCAR/CGD) slevis (Sam Levis, UCAR/CGD) -Date: Fri 31 May 2024 11:24:29 AM MDT +Date: Fri 31 May 2024 13:49:29 AM MDT One-line Summary: Rm manage_externals and update documentation accordingly Purpose and description of changes @@ -85,8 +85,11 @@ Changes answers relative to baseline: No Other details ------------- -List any externals directories updated (cime, rtm, mosart, cism, fates, etc.): - JIM: What's the answer here? +List any git submodules updated (cime, rtm, mosart, cism, fates, etc.): + Comparing .gitmodules against Externals.cfg and Externals_CLM_cfg: + - cismwrap_2_2_001 from cismwrap_2_1_100 + - cime6.0.246 from cime6.0.238_httpsbranch01 + - cdeps1.0.34 from cdeps1.0.33 Pull Requests that document the changes (include PR ids): https://github.com/ESCOMP/ctsm/pull/2443