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Error if multiple reads mapped onto the region #6

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wonaya opened this issue Mar 22, 2018 · 0 comments
Open

Error if multiple reads mapped onto the region #6

wonaya opened this issue Mar 22, 2018 · 0 comments

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@wonaya
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wonaya commented Mar 22, 2018

I am having issues running rseg-diff where if different multiple reads are mapped to the same region, it's throwing error that it is not sorted.

ERROR: reads not sorted in CENH3_2C_allmerge_1M_sort.bed
1	28	129	NS500599:158:H55CVBGX5:1:21108:3468:1367/1	0	-
1	28	129	NS500599:159:HCHWVBGX5:2:12109:11569:19492/1	0	+
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@wonaya