From 930a996f9129781379db21eb9f13cb129704d211 Mon Sep 17 00:00:00 2001 From: Kristoffer Andersson Date: Thu, 8 Feb 2024 14:37:52 +0100 Subject: [PATCH] chore: rename module to bert_neighbour Test Plan: - run tests - run CI Pull Request: https://github.com/spraakbanken/sparv-bert-neighbour-plugin/pull/5 --- .bumpversion.cfg | 6 +- .github/workflows/test.yml | 2 +- Makefile | 2 +- README.md | 10 +- examples/hello-bert-mask/config.yaml | 2 +- pyproject.toml | 4 +- .../__init__.py | 24 +- tests/requirements-test.txt | 12 - tests/requirements-testing.txt | 1109 +++++++++++++++++ tests/test_version.py | 4 +- 10 files changed, 1137 insertions(+), 38 deletions(-) rename src/{sparv_bert_neighbour => bert_neighbour}/__init__.py (82%) delete mode 100644 tests/requirements-test.txt create mode 100644 tests/requirements-testing.txt diff --git a/.bumpversion.cfg b/.bumpversion.cfg index 5ea14d4..09ec7b9 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -8,10 +8,10 @@ allow_dirty = False search = version = "{current_version}" replace = version = "{new_version}" -[bumpversion:file:src/sparv_bert_neighbour/__init__.py] +[bumpversion:file:src/bert_neighbour/__init__.py] search = __version__ = "{current_version}" replace = __version__ = "{new_version}" [bumpversion:file:tests/test_version.py] -search = assert sparv_bert_neighbour.__version__ == "{current_version}" -replace = assert sparv_bert_neighbour.__version__ == "{new_version}" +search = assert bert_neighbour.__version__ == "{current_version}" +replace = assert bert_neighbour.__version__ == "{new_version}" diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index 334fc1d..44804ee 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -206,7 +206,7 @@ jobs: name: pypi_files path: dist - - run: rm -r src/sparv_bert_neighbour + - run: rm -r src/bert_neighbour - run: pip install typing-extensions - run: pip install -r tests/requirements-testing.txt - run: pip install sparv-bert-neighbour-plugin --no-index --no-deps --find-links dist --force-reinstall diff --git a/Makefile b/Makefile index 2c02b77..adca1ae 100644 --- a/Makefile +++ b/Makefile @@ -50,7 +50,7 @@ help: PLATFORM := `uname -o` REPO := "sparv-bert-neighbour-plugin" -PROJECT_SRC := "src/sparv_bert_neighbour" +PROJECT_SRC := "src/bert_neighbour" ifeq (${VIRTUAL_ENV},) VENV_NAME = .venv diff --git a/README.md b/README.md index e0095a8..e2e6844 100644 --- a/README.md +++ b/README.md @@ -27,7 +27,7 @@ annotation exclusively by adding it as the only annotation to export under `xml_ ```yaml xml_export: annotations: - - :sparv_bert_neighbour.transformer-neighbour + - :bert_neighbour.transformer-neighbour ``` To use it together with other annotations you might add it under `export`: @@ -35,7 +35,7 @@ To use it together with other annotations you might add it under `export`: ```yaml export: annotations: - - :sparv_bert_neighbour.transformer-neighbour + - :bert_neighbour.transformer-neighbour ... ``` @@ -50,7 +50,7 @@ You can configure this plugin by choosing a huggingface model, huggingface trans The model defaults to [`KBLab/bert-base-swedish-cased`](https://huggingface.co/KBLab/bert-base-swedish-cased) but can be configured in `config.yaml`: ```yaml -sparv_bert_neighbour: +bert_neighbour: model: "KBLab/bert-base-swedish-cased" ``` @@ -59,7 +59,7 @@ sparv_bert_neighbour: The tokenizer defaults to [`KBLab/bert-base-swedish-cased`](https://huggingface.co/KBLab/bert-base-swedish-cased) but can be configured in `config.yaml`: ```yaml -sparv_bert_neighbour: +bert_neighbour: tokenizer: "KBLab/bert-base-swedish-cased" ``` @@ -68,6 +68,6 @@ sparv_bert_neighbour: The number of neighbours defaults to `5` but can be configured in `config.yaml`: ```yaml -sparv_bert_neighbour: +bert_neighbour: num_neighbours: 5 ``` diff --git a/examples/hello-bert-mask/config.yaml b/examples/hello-bert-mask/config.yaml index 06860f6..9fccd0d 100644 --- a/examples/hello-bert-mask/config.yaml +++ b/examples/hello-bert-mask/config.yaml @@ -10,7 +10,7 @@ export: - - - :stanza.pos - - :sparv_bert_neighbour.transformer-neighbour + - :bert_neighbour.transformer-neighbour sparv: compression: none diff --git a/pyproject.toml b/pyproject.toml index e687d02..08e1fac 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -34,7 +34,7 @@ requires = ["hatchling"] build-backend = "hatchling.build" [project.entry-points."sparv.plugin"] -sparv_bert_neighbour = "sparv_bert_neighbour" +bert_neighbour = "bert_neighbour" [project.urls] Homepage = "https://github.com/spraakbanken/sparv-bert-neighbour-plugin" @@ -55,7 +55,7 @@ dev-dependencies = [ exclude = ["/.github", "/docs"] [tool.hatch.build.targets.wheel] -packages = ["src/sparv_bert_neighbour"] +packages = ["src/bert_neighbour"] [tool.hatch.metadata] allow-direct-references = true diff --git a/src/sparv_bert_neighbour/__init__.py b/src/bert_neighbour/__init__.py similarity index 82% rename from src/sparv_bert_neighbour/__init__.py rename to src/bert_neighbour/__init__.py index 20b0118..6cdcad9 100644 --- a/src/sparv_bert_neighbour/__init__.py +++ b/src/bert_neighbour/__init__.py @@ -18,17 +18,17 @@ __config__ = [ Config( - "sparv_bert_neighbour.model", + "bert_neighbour.model", description="Huggingface pretrained model name", default="KBLab/bert-base-swedish-cased", ), Config( - "sparv_bert_neighbour.tokenizer", + "bert_neighbour.tokenizer", description="HuggingFace pretrained tokenizer name", default="KBLab/bert-base-swedish-cased", ), Config( - "sparv_bert_neighbour.num_neighbours", + "bert_neighbour.num_neighbours", description="The number of neighbours to list", default=5, ), @@ -46,22 +46,22 @@ ) def annotate_masked_bert( out_neighbour: Output = Output( - ":sparv_bert_neighbour.transformer-neighbour", + ":bert_neighbour.transformer-neighbour", cls="transformer_neighbour", description="Transformer neighbours from masked BERT (format: '|:|...|)", ), word: Annotation = Annotation(""), sentence: Annotation = Annotation(""), - model_name: str = Config("sparv_bert_neighbour.model"), - tokenizer_name: str = Config("sparv_bert_neighbour.tokenizer"), - num_neighbours_str: str = Config("sparv_bert_neighbour.num_neighbours"), + model_name: str = Config("bert_neighbour.model"), + tokenizer_name: str = Config("bert_neighbour.tokenizer"), + num_neighbours_str: str = Config("bert_neighbour.num_neighbours"), ) -> None: logger.info("annotate_masked_bert") try: num_neighbours = int(num_neighbours_str) except ValueError as exc: raise SparvErrorMessage( - f"'sparv_bert_neighbour.num_neighbours' must contain an 'int' got: '{num_neighbours_str}'" + f"'bert_neighbour.num_neighbours' must contain an 'int' got: '{num_neighbours_str}'" ) from exc tokenizer = BertTokenizer.from_pretrained(tokenizer_name) model = BertForMaskedLM.from_pretrained(model_name) @@ -78,9 +78,11 @@ def annotate_masked_bert( token_indices = list(sent) for token_index_to_mask in token_indices: sent_to_tag = TOK_SEP.join( - "[MASK]" - if token_index == token_index_to_mask - else token_word[token_index] + ( + "[MASK]" + if token_index == token_index_to_mask + else token_word[token_index] + ) for token_index in sent ) diff --git a/tests/requirements-test.txt b/tests/requirements-test.txt deleted file mode 100644 index 03411af..0000000 --- a/tests/requirements-test.txt +++ /dev/null @@ -1,12 +0,0 @@ -# generated by rye -# use `rye lock` or `rye sync` to update this lockfile -# -# last locked with the following flags: -# pre: false -# features: [] -# all-features: false - -sparv-pipeline>=5.2.0 -transformers>=4.34.1 -tabulate>=0.9.0 -pytest>=7 \ No newline at end of file diff --git a/tests/requirements-testing.txt b/tests/requirements-testing.txt new file mode 100644 index 0000000..5f2eb6a --- /dev/null +++ b/tests/requirements-testing.txt @@ -0,0 +1,1109 @@ +# This file is @generated by PDM. +# Please do not edit it manually. + +appdirs==1.4.4 \ + 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--hash=sha256:c5cd603b575ebceca7da5a3a251e69561bec509e0b46e4993e1cac402b7247b8 \ + --hash=sha256:d2efee35b4b0a347e0d99d28e884dfd82797852d62fcd7ebdeee26f3ceb72cf3 \ + --hash=sha256:db2e408d983b0e61e238cf579c09ef7020560441906ca990fe8412153e3b291f \ + --hash=sha256:dcdba5c86e368442528f7060039eda390cc4091bfd1dca41e8046af7c910dda8 \ + --hash=sha256:decbfa2f618fa8ed81c95ee18a387ff973143c656ef800c9f24fb7e9c16054e2 \ + --hash=sha256:e4fdb9275308292e880dcbeb12546df7f3e0f96c6b41197e0cf37d2826359020 \ + --hash=sha256:eb1b046be06b0fce7249f1d025cd359b4b80fc1c3e24ad9eca33e0dcdb2e4a35 \ + --hash=sha256:eb6e651000a19c96f452c85132811d25e9264d836951022d6e81df2fff38337d \ + --hash=sha256:ed867c42c268f876097248e05b6117a65bcd1e63b779e916fe2e33cd6fd0d3c3 \ + --hash=sha256:edfad1d29c73f9b863ebe7082ae9321374ccb10879eeabc84ba3b69f2579d537 \ + --hash=sha256:f2058f813d4f2b5e3a9eb2eb3faf8f1d99b81c3e51aeda4b168406443e8ba809 \ + --hash=sha256:f6b2d0c6703c988d334f297aa5df18c45e97b0af3679bb75059e0e0bd8b1069d \ + --hash=sha256:f8212564d49c50eb4565e502814f694e240c55551a5f1bc841d4fcaabb0a9b8a \ + --hash=sha256:ffa565331890b90056c01db69c0fe634a776f8019c143a5ae265f9c6bc4bd6d4 +yte==1.5.4 \ + --hash=sha256:14ccfcb57d60b7652041b606129851423805140b22f52f5152f7c2692cd7b905 \ + --hash=sha256:d2d77e53eafca74f58234fcd3fea28cc0a719e4f3784911511e35e86594bc880 +zipp==3.17.0 \ + --hash=sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31 \ + --hash=sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0 diff --git a/tests/test_version.py b/tests/test_version.py index cb3f7a2..612b484 100644 --- a/tests/test_version.py +++ b/tests/test_version.py @@ -1,5 +1,5 @@ -import sparv_bert_neighbour +import bert_neighbour def test_version() -> None: - assert sparv_bert_neighbour.__version__ == "0.2.1" + assert bert_neighbour.__version__ == "0.2.1"