diff --git a/.github/DOCS.md b/.github/DOCS.md new file mode 100644 index 0000000..542a4ea --- /dev/null +++ b/.github/DOCS.md @@ -0,0 +1,27 @@ +# Github config and workflows + +In this folder there is configuration for codecoverage, dependabot and ci workflows. + +This folder can be merged using a `--allow-unrelated-histories` merge strategy from which provides a reasonably sensible base for writing your own ci on. By using this strategy the history of the CI repo is included in your repo, and future updates to the CI can be merged later. + +The workflows in this folder requires a root Makefile with a couple of targets defined. +As base can the Makefile in be used. + +To perform this merge run: + +```shell +git remote add ci git@github.com:spraakbanken/python-pdm-ci-conf.git +git fetch ci +git merge --allow-unrelated-histories ci/main +``` + +or add the remote as `git remote add ci https://github.com/spraakbanken/python-pdm-ci-conf.git` + +To later merge updates to this repo, just run: + +```shell +git fetch ci +get merge ci/main +``` + +This setup is inspired by . diff --git a/.github/actions/setup-python-env/action.yml b/.github/actions/setup-python-env/action.yml deleted file mode 100644 index e1d8d7b..0000000 --- a/.github/actions/setup-python-env/action.yml +++ /dev/null @@ -1,58 +0,0 @@ -name: "setup-python-env" -description: "Composite action to setup the Python and rye environment." - -inputs: - cache-extra-key: - required: false - description: "Extra cache key to use" - default: "" - python-version: - required: false - description: "The python version to use" - default: "3.11" - rye-version: - required: false - description: "The version of rye to use" - default: "latest" -outputs: - python-version: - description: "Python version used" - value: ${{ steps.set-python-version.outputs.python-version }} - rye-version: - description: "rye version used" - value: ${{ steps.set-rye-version.outputs.poetry-version }} - -runs: - using: "composite" - steps: - - name: Install rye - id: setup-rye - uses: eifinger/setup-rye@f8f2ca26808cdffef0b77c4fddf4305a5e5b010a - with: - version: ${{ inputs.rye-version }} - - - name: Pin python version - run: rye pin ${{ inputs.python-version }} - shell: bash - - - name: Output python version - id: set-python-version - run: echo "python-version=$(rye run python -c 'import sys; print(".".join(map(str, sys.version_info[0:3])))')" >> $GITHUB_OUTPUT - shell: bash - - - name: Output rye version - id: set-rye-version - run: echo "rye-version=${{ steps.setup-rye.outputs.rye-version}}" >> $GITHUB_OUTPUT - shell: bash - - - name: Load cached venv - id: cached-poetry-dependencies - uses: actions/cache@v3 - with: - path: .venv - key: venv-${{ runner.os }}-${{ steps.set-python-version.outputs.python-version }}-${{ inputs.cache-extra-key }}-${{ hashFiles('**/pyproject.toml') }} - - - name: Install dependencies - if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true' - run: rye sync --features=ci - shell: bash diff --git a/.github/codecov.yml b/.github/codecov.yml new file mode 100644 index 0000000..cd5ce8f --- /dev/null +++ b/.github/codecov.yml @@ -0,0 +1,21 @@ +# ref: https://docs.codecov.com/docs/codecovyml-reference +coverage: + # Hold ourselves to a high bar + range: 85..100 + round: down + precision: 1 + status: + # ref: https://docs.codecov.com/docs/commit-status + project: + default: + # Avoid false negatives + threshold: 1% + +# Test files aren't important for coverage +ignore: + - "tests" + +# Make comments less noisy +comment: + layout: "files" + require_changes: true diff --git a/.github/dependabot.yml b/.github/dependabot.yml index 0c71429..aa363d3 100644 --- a/.github/dependabot.yml +++ b/.github/dependabot.yml @@ -5,12 +5,21 @@ version: 2 updates: - - package-ecosystem: "pip" # See documentation for possible values - directory: "/" # Location of package manifests - schedule: - interval: "weekly" # Maintain dependencies for GitHub Actions - package-ecosystem: "github-actions" directory: "/" schedule: interval: "weekly" + - package-ecosystem: "pip" # See documentation for possible values + directory: "/" # Location of package manifests + schedule: + interval: "daily" + ignore: + - dependency-name: "*" + # patch and minor updates don't matter for libraries as consumers of this library build + # with their own lockfile, rather than the version specified in this library's lockfile + # remove this ignore rule if your package has binaries to ensure that the binaries are + # built with the exact set of dependencies and those are up to date. + update-types: + - "version-update:semver-patch" + - "version-update:semver-minor" diff --git a/.github/workflows/check.yml b/.github/workflows/check.yml new file mode 100644 index 0000000..3bb1c08 --- /dev/null +++ b/.github/workflows/check.yml @@ -0,0 +1,105 @@ +name: check + +on: + push: + branches: + - main + pull_request: + merge_group: + +permissions: + contents: read + +env: + MINIMUM_PYTHON_VERSION: "3.9" + +# If new code is pushed to a PR branch, then cancel in progress workflows for that PR. Ensures that +# we don't waste CI time, and returns results quicker https://github.com/jonhoo/rust-ci-conf/pull/5 +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + +jobs: + fmt: + runs-on: ubuntu-latest + name: ubuntu / fmt + steps: + - uses: actions/checkout@v4 + + - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }} + uses: pdm-project/setup-pdm@v4 + id: setup-python + with: + python-version: ${{ env.MINIMUM_PYTHON_VERSION }} + + - name: Load cached venv + id: cached-venv + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('.github/workflows/check.yml') }} + + - name: Install dependencies + if: steps.cached-venv.outputs.cache-hit != 'true' + run: make install-dev + + - name: check formatting + run: make check-fmt + lint: + runs-on: ubuntu-latest + name: ubuntu / lint + steps: + - uses: actions/checkout@v4 + - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }} + uses: pdm-project/setup-pdm@v4 + id: setup-python + with: + python-version: ${{ env.MINIMUM_PYTHON_VERSION }} + - name: Load cached venv + id: cached-venv + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('.github/workflows/check.yml') }} + - name: Install dependencies + if: steps.cached-venv.outputs.cache-hit != 'true' + run: make install-dev + - name: lint code + run: make lint + type-check: + runs-on: ubuntu-latest + name: ubuntu / type-check + steps: + - uses: actions/checkout@v4 + - name: Set up the python ${{ env.MINIMUM_PYTHON_VERSION }} + uses: pdm-project/setup-pdm@v4 + id: setup-python + with: + python-version: ${{ env.MINIMUM_PYTHON_VERSION }} + - name: Load cached venv + id: cached-venv + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('.github/workflows/check.yml') }} + - name: Install dependencies + if: steps.cached-venv.outputs.cache-hit != 'true' + run: make install-dev + - name: type-check code + run: make lint + + # https://github.com/marketplace/actions/alls-green#why used for branch protection checks + check-check: + if: always() + needs: + - fmt + - lint + - type-check + runs-on: ubuntu-latest + permissions: {} + steps: + - name: Decide whether the needed jobs succeeded or failed + uses: re-actors/alls-green@release/v1 + with: + jobs: ${{ toJSON(needs) }} + allowed-failures: upload-coverage diff --git a/.github/workflows/scheduled.yml b/.github/workflows/scheduled.yml new file mode 100644 index 0000000..3d7c8f1 --- /dev/null +++ b/.github/workflows/scheduled.yml @@ -0,0 +1,48 @@ +# Run scheduled (rolling) jobs on a nightly basis, as your crate may break independently of any +# given PR. E.g., updates to rust nightly and updates to this crates dependencies. See check.yml for +# information about how the concurrency cancellation and workflow triggering works +permissions: + contents: read + +on: + push: + branches: [main] + pull_request: + schedule: + - cron: '7 7 * * *' + +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + +name: rolling + +jobs: + + update: + # This action checks that updating the dependencies of this crate to the latest available that + # satisfy the versions in Cargo.toml does not break this crate. This is important as consumers + # of this crate will generally use the latest available crates. This is subject to the standard + # Cargo semver rules (i.e cargo does not update to a new major version unless explicitly told + # to). + runs-on: ubuntu-latest + name: ubuntu / 3.12 / updates work + # There's no point running this if no Cargo.lock was checked in in the first place, since we'd + # just redo what happened in the regular test job. Unfortunately, hashFiles only works in if on + # steps, so we repeat it. + steps: + - uses: actions/checkout@v4 + - name: Install 3.12 + if: hashFiles('pdm.lock') != '' + uses: pdm-project/setup-pdm@v4 + with: + python-version: "3.12" + - name: pdm update + if: hashFiles('pdm.lock') != '' + run: pdm update + - name: pdm sync --dev + if: hashFiles('pdm.lock') != '' + run: pdm sync --dev + - name: make test + if: hashFiles('pdm.lock') != '' + run: make test diff --git a/.github/workflows/ci.yml b/.github/workflows/test.yml similarity index 51% rename from .github/workflows/ci.yml rename to .github/workflows/test.yml index b591435..334fc1d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/test.yml @@ -1,160 +1,144 @@ -name: CI +name: test on: push: + branches: + - main pull_request: merge_group: +concurrency: + group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} + cancel-in-progress: true + permissions: contents: read env: - MINIMUM_PYTHON_VERSION: "3.8" + MINIMUM_PYTHON_VERSION: "3.9" jobs: - lint: - name: ${{ matrix.task.name }} (${{ matrix.os }}) - strategy: - max-parallel: 4 - fail-fast: false - matrix: - # Only run checks for ubuntu - os: [ubuntu] - task: - - name: Type check - run: make type-check - - name: Check formatting - run: make check-fmt - - name: Lint code - run: make lint - - runs-on: ${{ matrix.os }}-latest - - steps: - #---------------------------------------------- - # check-out repo - #---------------------------------------------- - - name: Check out repository - uses: actions/checkout@v4 - - #---------------------------------------------- - # ----- install & configure python & rye ----- - #---------------------------------------------- - - name: Set up the environment - uses: ./.github/actions/setup-python-env - with: - python-version: ${{ env.MINIMUM_PYTHON_VERSION }} - #---------------------------------------------- - # Run matrix task - #---------------------------------------------- - - name: ${{ matrix.task.name }} - run: ${{ matrix.task.run }} coverage: - name: "Test py-${{ matrix.python-version }} (${{ matrix.os }})" + name: "${{ matrix.os }} / ${{ matrix.python-version }} / coverage" strategy: max-parallel: 4 fail-fast: false matrix: os: [ubuntu] python-version: - - "3.8" + # remove the unused versions - "3.9" - "3.10" - "3.11" - "3.12" -# continue-on-error: >- -# ${{ contains(matrix.python-version, 'dev') && true || false }} - runs-on: ${{ matrix.os }}-latest + env: + OS: ${{ matrix.os }}-latest + PYTHON: ${{ matrix.python-version }} steps: - #---------------------------------------------- - # check-out repo and set-up python - #---------------------------------------------- - - name: Check out repository - uses: actions/checkout@v4 + - uses: actions/checkout@v4 - #---------------------------------------------- - # ----- install & configure python & rye ----- - #---------------------------------------------- - name: Set up the environment - uses: ./.github/actions/setup-python-env + uses: pdm-project/setup-pdm@v4 + id: setup-python with: python-version: ${{ matrix.python-version }} + + - name: Load cached venv + id: cached-venv + uses: actions/cache@v4 + with: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('.github/workflows/test.yml') }} + + - name: Install dependencies + if: steps.cached-venv.outputs.cache-hit != 'true' + run: make install-dev - - #---------------------------------------------- - # Run tests and upload coverage - #---------------------------------------------- - name: Run tests for coverage - run: make test-w-coverage - - - name: copy coverage - run: | - mkdir coverage - cp -v .coverage coverage/.coverage.${{ matrix.os }}-py${{ matrix.python-version }} + run: make test-w-coverage cov_report=xml - - name: store coverage files - uses: actions/upload-artifact@v4 + - name: Upload coverage to Codecov + uses: codecov/codecov-action@v4 with: - name: coverage - path: coverage - + token: ${{ secrets.CODECOV_TOKEN }} + # directory: ./coverage + env_vars: OS,PYTHON + fail_ci_if_error: true + # files: ./coverage/coverage.xml + # flags: unittests + # name: codecov-umbrella + verbose: true - upload-coverage: - name: Upload test coverage to CodeCov - needs: [coverage] + minimal: + # This action chooses the oldest version of the dependencies permitted by Cargo.toml to ensure + # that this crate is compatible with the minimal version that this crate and its dependencies + # require. This will pickup issues where this create relies on functionality that was introduced + # later than the actual version specified (e.g., when we choose just a major version, but a + # method was added after this version). + # + runs-on: ubuntu-latest - permissions: - statuses: write + name: ubuntu / 3.9 / minimal-versions steps: - #---------------------------------------------- - # check-out repo and set-up python - #---------------------------------------------- - - name: Check out repository - uses: actions/checkout@v4 - - name: Set up python ${{ env.MINIMUM_PYTHON_VERSION }} + - uses: actions/checkout@v4 + - name: Set up the environment + uses: pdm-project/setup-pdm@v4 id: setup-python - uses: actions/setup-python@v5 with: python-version: ${{ env.MINIMUM_PYTHON_VERSION }} - + + - name: pdm lock --strategy direct_minimal_versions + run: pdm lock --strategy direct_minimal_versions + - name: pdm sync --dev + run: pdm sync --dev + - name: make test + run: make test + + run-example: + name: Run example + runs-on: ubuntu-latest + steps: + - name: Check out repository + uses: actions/checkout@v4 #---------------------------------------------- - # install dependencies if cache does not exist + # ----- setup python ----- #---------------------------------------------- - - name: Install dependencies - run: pip install coverage - - - name: download coverage files - uses: actions/download-artifact@v4 + - name: Set up the environment + uses: pdm-project/setup-pdm@v4 + id: setup-python with: - name: coverage - path: coverage - - - name: convert coverage to xml - run: | - coverage combine --data-file=coverage/.coverage - coverage xml -i --data-file=coverage/.coverage - ls - ls coverage - - - name: Upload coverage to Codecov - uses: codecov/codecov-action@v3 + python-version: ${{ env.MINIMUM_PYTHON_VERSION }} + + + - name: Load cached venv + id: cached-venv + uses: actions/cache@v4 with: - token: ${{ secrets.CODECOV_TOKEN }} - # directory: ./coverage - # env_vars: OS,PYTHON - fail_ci_if_error: false - # files: ./coverage/coverage.xml - # flags: unittests - # name: codecov-umbrella - verbose: true - - # https://github.com/marketplace/actions/alls-green#why used for branch protection checks - check: + path: .venv + key: venv-${{ runner.os }}-${{ steps.setup-python.outputs.python-version }}-${{ hashFiles('**/pyproject.toml') }}-${{ hashFiles('.github/workflows/ci.yml') }} + + - name: Install dependencies + if: steps.cached-venv.outputs.cache-hit != 'true' + run: make install-dev + + - name: Run example + run: | + source .venv/bin/activate + cd examples/hello-bert-mask + echo "" | sparv setup + sparv run + ls -R + + # https://github.com/marketplace/actions/alls-green#why used for branch protection checks + test-check: if: always() - needs: [lint, coverage] + needs: + - coverage + - minimal + - run-example runs-on: ubuntu-latest permissions: {} steps: @@ -162,10 +146,9 @@ jobs: uses: re-actors/alls-green@release/v1 with: jobs: ${{ toJSON(needs) }} - # allowed-failures: coverage build: - name: Build package + name: ubuntu / 3.9 / build package # only run on push to main and on release if: success() && (startsWith(github.ref, 'refs/tags/v') || github.ref == 'refs/heads/main') runs-on: ubuntu-latest @@ -177,19 +160,19 @@ jobs: uses: actions/checkout@v4 #---------------------------------------------- - # ----- install & configure rye ----- + # ----- setup python ----- #---------------------------------------------- - - name: Install rye - id: setup-rye - uses: eifinger/setup-rye@5b24b104a68da1e2ea0073aa191a2bab66f55d7c + - name: Set up the environment + uses: pdm-project/setup-pdm@v4 + id: setup-python + with: + python-version: ${{ env.MINIMUM_PYTHON_VERSION }} - - name: Set up python ${{ env.MINIMUM_PYTHON_VERSION }} - run: rye pin ${{ env.MINIMUM_PYTHON_VERSION }} #---------------------------------------------- # ----- build distribution ----- #---------------------------------------------- - name: Build distribution - run: rye build + run: make build #---------------------------------------------- # ----- upload artifacts ----- @@ -200,13 +183,13 @@ jobs: path: dist test-build: - name: test build on ${{ matrix.os }} needs: [build] strategy: fail-fast: false matrix: os: [ubuntu] + name: ${{ matrix.os }} / 3.9 / test built package runs-on: ${{ matrix.os }}-latest steps: @@ -225,12 +208,14 @@ jobs: - run: rm -r src/sparv_bert_neighbour - run: pip install typing-extensions - - run: pip install -r tests/requirements-test.txt + - run: pip install -r tests/requirements-testing.txt - run: pip install sparv-bert-neighbour-plugin --no-index --no-deps --find-links dist --force-reinstall - run: pytest publish: - needs: [check, test-build] + needs: + - test-check + - test-build if: success() && startsWith(github.ref, 'refs/tags/v') runs-on: ubuntu-latest environment: release diff --git a/.gitignore b/.gitignore index dc73bc5..e8e057d 100644 --- a/.gitignore +++ b/.gitignore @@ -168,9 +168,10 @@ requirements.lock requirements-dev.lock # Examples -assets/*/.snakemake -assets/*/export -assets/*/sparv-workdir -assets/*/logs +examples/*/.snakemake +examples/*/export +examples/*/sparv-workdir +examples/*/logs +.pdm-python diff --git a/Makefile b/Makefile index a321129..2c02b77 100644 --- a/Makefile +++ b/Makefile @@ -1,18 +1,72 @@ - -.default: run-all-tests +# use this Makefile as base in your project by running +# git remote add make https://github.com/spraakbanken/python-pdm-make-conf +# git fetch make +# git merge --allow-unrelated-histories make/main +# +# To later update this makefile: +# git fetch make +# git merge make/main +# +.default: help + +.PHONY: help +help: + @echo "usage:" + @echo "dev | install-dev" + @echo " setup development environment" + @echo "" + @echo "info" + @echo " print info about the system and project" + @echo "" + @echo "test" + @echo " run all tests" + @echo "" + @echo "test-w-coverage [cov=] [cov_report=]" + @echo " run all tests with coverage collection. (Default: cov_report='term-missing', cov='--cov=${PROJECT_SRC}')" + @echo "" + @echo "lint" + @echo " lint the code" + @echo "" + @echo "type-check" + @echo " check types" + @echo "" + @echo "fmt" + @echo " format the code" + @echo "" + @echo "check-fmt" + @echo " check that the code is formatted" + @echo "" + @echo "bumpversion [part=]" + @echo " bumps the given part of the version of the project. (Default: part='patch')" + @echo "" + @echo "publish [branch=]" + @echo " pushes the given branch including tags to origin, for CI to publish based on tags. (Default: branch='main')" + @echo " Typically used after `make bumpversion`" + @echo "" + @echo "prepare-release" + @echo " run tasks to prepare a release" + @echo "" PLATFORM := `uname -o` -PROJECT := "sparv_bert_neighbour" +REPO := "sparv-bert-neighbour-plugin" +PROJECT_SRC := "src/sparv_bert_neighbour" ifeq (${VIRTUAL_ENV},) VENV_NAME = .venv - INVENV = rye run + INVENV = pdm run else VENV_NAME = ${VIRTUAL_ENV} INVENV = endif +default_cov := "--cov=${PROJECT_SRC}" +cov_report := "term-missing" +cov := ${default_cov} + +all_tests := tests +tests := tests + info: @echo "Platform: ${PLATFORM}" @echo "INVENV: '${INVENV}'" @@ -21,29 +75,30 @@ dev: install-dev # setup development environment install-dev: - rye sync --no-lock - -test: run-all-tests - -# run all tests -run-all-tests: - ${INVENV} pytest -vv tests + pdm install --dev -# run all doc tests -run-doc-tests: - ${INVENV} python -m doctest -v karp_lex/value_objects/unique_id.py +.PHONY: test +test: + ${INVENV} pytest -vv ${tests} +.PHONY: test-w-coverage # run all tests with coverage collection test-w-coverage: - ${INVENV} pytest -vv --cov=src/${PROJECT} --cov-report=xml tests + ${INVENV} pytest -vv ${cov} --cov-report=${cov_report} ${all_tests} +.PHONY: doc-tests +doc-tests: + ${INVENV} pytest ${cov} --cov-report=${cov_report} --doctest-modules ${PROJECT_SRC} + +.PHONY: type-check # check types type-check: - ${INVENV} mypy src + ${INVENV} mypy ${PROJECT_SRC} ${tests} +.PHONY: lint # lint the code lint: - ${INVENV} ruff src tests + ${INVENV} ruff ${PROJECT_SRC} ${tests} part := "patch" bumpversion: install-dev @@ -51,8 +106,22 @@ bumpversion: install-dev # run formatter(s) fmt: - ${INVENV} black src tests + ${INVENV} ruff format ${PROJECT_SRC} ${tests} +.PHONY: check-fmt # check formatting check-fmt: - ${INVENV} black --check src tests + ${INVENV} ruff format --check ${PROJECT_SRC} ${tests} + +build: + pdm build + +branch := "main" +publish: + git push -u origin ${branch} --tags + +.PHONY: prepare-release +prepare-release: tests/requirements-testing.txt + +tests/requirements-testing.txt: pyproject.toml + pdm export --dev --format requirements --output $@ \ No newline at end of file diff --git a/README.md b/README.md index 65bf289..e0095a8 100644 --- a/README.md +++ b/README.md @@ -21,7 +21,7 @@ pipx inject sparv-pipeline sparv-bert-neighbour-plugin ## Usage -Depending on how many exlicit exports of annotations you have you can decide to use this +Depending on how many exlicit exports of annotations you have you can decide to use this annotation exclusively by adding it as the only annotation to export under `xml_export`: ```yaml @@ -39,6 +39,8 @@ export: ... ``` 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 + ### Configuration You can configure this plugin by choosing a huggingface model, huggingface transformer and the number of neighbours to generate. diff --git a/assets/hello-bert-mask/config.yaml b/examples/hello-bert-mask/config.yaml similarity index 100% rename from assets/hello-bert-mask/config.yaml rename to examples/hello-bert-mask/config.yaml diff --git a/assets/hello-bert-mask/source/dokument.txt b/examples/hello-bert-mask/source/dokument.txt similarity index 100% rename from assets/hello-bert-mask/source/dokument.txt rename to examples/hello-bert-mask/source/dokument.txt diff --git a/assets/texts/dokument.txt b/examples/texts/dokument.txt similarity index 100% rename from assets/texts/dokument.txt rename to examples/texts/dokument.txt diff --git a/pdm.lock b/pdm.lock new file mode 100644 index 0000000..8278b7b --- /dev/null +++ b/pdm.lock @@ -0,0 +1,2312 @@ +# This file is @generated by PDM. +# It is not intended for manual editing. + +[metadata] +groups = ["default", "dev"] +strategy = ["cross_platform", "inherit_metadata"] +lock_version = "4.4.1" +content_hash = "sha256:ba436b1fde50163f18ee08183fcedc49fa36b2c6dc2d4ac1a005056c052128dd" + +[[package]] +name = "appdirs" +version = "1.4.4" +summary = "A small Python module for determining 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"https://github.com/spraakbanken/sparv-bert-neighbour-plugin" Repository = "https://github.com/spraakbanken/sparv-bert-neighbour-plugin" @@ -63,8 +60,6 @@ packages = ["src/sparv_bert_neighbour"] [tool.hatch.metadata] allow-direct-references = true -[tool.black] -target-version = ["py38", "py39", "py310", "py311", "py312"] [tool.hatch.envs.test] dependencies = ["pytest", "pytest-cov"] @@ -74,3 +69,12 @@ dependencies = ["pytest", "pytest-cov"] [[tool.hatch.envs.test.matrix]] python = ["3.8", "3.9", "3.10", "3.11", "3.12"] + +[tool.pdm.dev-dependencies] +dev = [ + "pytest>=8.0.0", + "ruff>=0.2.1", + "mypy>=1.8.0", + "bump2version>=1.0.1", + "pytest-cov>=4.1.0", +] diff --git a/src/sparv_bert_neighbour/__init__.py b/src/sparv_bert_neighbour/__init__.py index 18608e5..20b0118 100644 --- a/src/sparv_bert_neighbour/__init__.py +++ b/src/sparv_bert_neighbour/__init__.py @@ -102,7 +102,8 @@ def __init__(self, *, tokenizer, model) -> None: def get_top_k_predictions(self, text: str, k=5) -> str: if predictions := self.pipeline(text, top_k=k): predictions_str = "|".join( - f"{pred['token_str']}:{pred['score']}" for pred in predictions # type: ignore + f"{pred['token_str']}:{pred['score']}" + for pred in predictions # type: ignore ) return f"|{predictions_str}|" else: