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Get BAM or SAM output from tool? #10

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cmdcolin opened this issue Oct 16, 2018 · 1 comment
Open

Get BAM or SAM output from tool? #10

cmdcolin opened this issue Oct 16, 2018 · 1 comment

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@cmdcolin
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Is it possible to get BAM/SAM output from the tool instead of FASTQ? I guess my purposes are kind of weird but I just wanted to get the read pair info without re-alignment
@gkm2002
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gkm2002 commented May 5, 2022

Hi, I agree that it would be useful to get BAM/SAM output from the tool. For reads that map to a certain region I would like to know where the other read is mapped.

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@cmdcolin @gkm2002