From 1b81c0b3a7f74b3ba44da7488b3268efbca957c8 Mon Sep 17 00:00:00 2001
From: Maximilian Scholz <m0hawk@gmx.de>
Date: Mon, 16 Dec 2024 15:45:35 +0100
Subject: [PATCH] Build documentation and fix some check() problems.

---
 R/mcmc-traces.R    |  4 ++--
 man/MCMC-traces.Rd | 10 ++++++++--
 2 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/R/mcmc-traces.R b/R/mcmc-traces.R
index 01f79e1f..2e5f32e1 100644
--- a/R/mcmc-traces.R
+++ b/R/mcmc-traces.R
@@ -311,7 +311,7 @@ mcmc_rank_overlay <- function(x,
       group_by(.data$chain) %>%
       mutate(
         chain = ifelse(
-          iteration <= midpoint,
+          .data$iteration <= midpoint,
           paste0(.data$chain, "_1"),
           paste0(.data$chain, "_2")
         )
@@ -523,7 +523,7 @@ mcmc_rank_ecdf <-
       group_by(.data$chain) %>%
       mutate(
         chain = ifelse(
-          iteration <= midpoint,
+          .data$iteration <= midpoint,
           paste0(.data$chain, "_1"),
           paste0(.data$chain, "_2")
         )
diff --git a/man/MCMC-traces.Rd b/man/MCMC-traces.Rd
index 1054591b..4f631067 100644
--- a/man/MCMC-traces.Rd
+++ b/man/MCMC-traces.Rd
@@ -51,7 +51,8 @@ mcmc_rank_overlay(
   facet_args = list(),
   ...,
   n_bins = 20,
-  ref_line = FALSE
+  ref_line = FALSE,
+  split_chains = FALSE
 )
 
 mcmc_rank_hist(
@@ -75,7 +76,8 @@ mcmc_rank_ecdf(
   facet_args = list(),
   prob = 0.99,
   plot_diff = FALSE,
-  interpolate_adj = NULL
+  interpolate_adj = NULL,
+  split_chains = FALSE
 )
 
 mcmc_trace_data(
@@ -193,6 +195,10 @@ of rank-normalized MCMC samples. Defaults to \code{20}.}
 \item{ref_line}{For the rank plots, whether to draw a horizontal line at the
 average number of ranks per bin. Defaults to \code{FALSE}.}
 
+\item{split_chains}{Logical indicating whether to split each chain into two parts.
+If TRUE, each chain is split into first and second half with "_1" and "_2" suffixes.
+Defaults to \code{FALSE}.}
+
 \item{K}{An optional integer defining the number of equally spaced evaluation
 points for the PIT-ECDF. Reducing K when using \code{interpolate_adj = FALSE}
 makes computing the confidence bands faster. For \code{ppc_pit_ecdf} and