thesis.tex

% This sample file is dedicated to the public domain.
\documentclass[12pt]{myucthesis}

%\nofiles
% The above command prevents latex from writing its auxiliary
% files. This is useful if you want to manually tweak them before you
% generate your final PDF.


% Page layout. The fancyhdr package may complain about the need for a
% larger headheight, depending on how long chapter titles are; if left
% unspecified in the geometry setup, it defaults to 12pt. The
% "showframe" option causes the geometry package (version >= 5.0) to
% show a frame around the margins on every page, which is great for
% checking that you don't overflow anywhere.

%\usepackage[letterpaper,includehead,margin=1in,headheight=15pt,showframe]{geometry}
\usepackage[letterpaper,includehead,margin=1in,headheight=15pt]{geometry}
\usepackage{fancyhdr}
\pagestyle{fancyplain}
\lhead[\fancyplain{\thepage}{\thepage}]{\fancyplain{}{\scshape\rightmark}}
\rhead[\fancyplain{}{\scshape\leftmark}]{\fancyplain{\thepage}{\thepage}}
\chead{}
\cfoot{}
\lfoot{}
\rfoot{}


% Bibliography stuff:

\newcommand{\newblock}{\par} % need this for some natbib internal bug
\usepackage[numbers,sort&compress]{natbib}
%\citestyle{aa}
%\bibliographystyle{apsrev}
%\bibliographystyle{yahapj}
%\bibliographystyle{unsrtnat}
\bibliographystyle{dhsthesis2}
\setlength{\bibsep}{0ex} % single-space entries
\def\bibpreamble{\addcontentsline{toc}{chapter}{Bibliography}} % get a good TOC entry


% Other setup:

\usepackage[T1]{fontenc} % see http://tinyurl.com/67zdxwf
%\usepackage{microtype} % various subtle typographic improvements

% hyperref, see: http://www.tug.org/applications/hyperref/ftp/doc/manual.html
\usepackage[colorlinks,urlcolor=blue,citecolor=blue,linkcolor=blue,pdfusetitle,bookmarksnumbered]{hyperref}

\usepackage{pdflscape} % allows landscape-oriented figures with PDF page rotation
\usepackage{aasmacros,amsmath,amssymb,graphicx}
\usepackage{mydeluxetable} % deluxetable customized to play well with ucthesis


\begin{document}
\ssp % single spacing
\hypersetup{pageanchor=true}
\include{setup}
\maketitle
\copyrightpage

\begin{abstract}
An abstract.
\end{abstract}

\hypersetup{pageanchor=false}
\begin{frontmatter}

\begin{dedication}
\null\vfil
{\large
\begin{center}
I dedicate this dissertation to graduate students everywhere.
\end{center}}
\null\vfil
\end{dedication}

\pdfbookmark[0]{Table of Contents}{toc_bookmark} % manually add bookmark for ToC
\tableofcontents
\listoffigures % optional
\listoftables % optional

% If using code.sty, can also add:
%% \listofcodes
%% \addcontentsline{toc}{chapter}{List of Code Examples}

\begin{acknowledgements}
An acknowledgement.
\end{acknowledgements}
\end{frontmatter}

\include{newcommand_defs} % separate file for the definition of new commands

\include{intro/intro}
\include{dephasing/dephasing}
\include{msfn/msfn}
\include{experimental/experimental}
%\include{Tscaling/Tscaling}
%\include{Gscaling/Gscaling}
%\include{materials/materials}
%\include{conclusion/conclusion}

\appendix
\include{stitch_spec/stitch_spec}
\include{fitting/fitting}


\bibliography{thesis}
%\bibliography{santon_refs}
\end{document}