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pyproject.toml
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[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"
[project]
name = "sig_networks"
authors = [
{ name = "Ryan Chan", email = "[email protected]" },
{ name = "Talia Tseriotou", email = "[email protected]" },
{ name = "Kasra Hosseini", email = "[email protected]" },
]
description = "Neural networks for longitudinal NLP classification tasks."
readme = "README.md"
requires-python = ">=3.8, <3.9"
classifiers = [
"Development Status :: 1 - Planning",
"Intended Audience :: Science/Research",
"Intended Audience :: Developers",
"License :: OSI Approved :: BSD License",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Topic :: Scientific/Engineering",
]
dynamic = ["version"]
dependencies = [
"nlpsig >= 0.2.2",
"torch == 1.9.0",
"torchvision == 0.10.0",
"signatory == 1.2.6.1.9.0",
"tdqm >= 0.0.1",
"pandas >= 1.5.3",
"umap-learn >= 0.5.3",
"scikit-learn >= 1.2.2",
"datasets >= 2.6.1",
"distinctipy >= 1.2.2",
"evaluate >= 0.4.0",
"accelerate == 0.20.1",
"transformers == 4.30.2"
]
[project.optional-dependencies]
test = [
"pytest >=6",
"pytest-cov >=3",
]
dev = [
"pytest >=6",
"pytest-cov >=3",
]
docs = [
"sphinx>=4.0",
"myst_parser>=0.13",
"sphinx-book-theme>=0.1.0",
"sphinx_copybutton",
"furo",
]
[project.urls]
Homepage = "https://github.com/datasig-ac-uk/nlpsig"
"Bug Tracker" = "https://github.com/datasig-ac-uk/nlpsig/issues"
Discussions = "https://github.com/datasig-ac-uk/nlpsig/discussions"
Changelog = "https://github.com/datasig-ac-uk/nlpsig/releases"
[tool.hatch]
version.path = "src/sig_networks/__init__.py"
envs.default.dependencies = [
"pytest",
"pytest-cov",
]
[tool.pytest.ini_options]
minversion = "6.0"
addopts = ["-ra", "--showlocals", "--strict-markers", "--strict-config"]
xfail_strict = true
filterwarnings = [
"error",
"ignore::UserWarning",
"ignore:Tensorflow not installed; ParametricUMAP will be unavailable:ImportWarning", # umap
"ignore:pkg_resources is deprecated as an API:DeprecationWarning", # umap
"ignore:Deprecated call to *:DeprecationWarning",
"ignore:numba.core.errors.NumbaDeprecationWarning", # umap using numba
"ignore:numba.core.errors.NumbaPendingDeprecationWarning", # umap using numba
]
log_cli_level = "INFO"
testpaths = [
"tests",
]
[tool.mypy]
files = "src"
python_version = "3.8"
# warn_unused_configs = true
# strict = true
# show_error_codes = true
# enable_error_code = ["ignore-without-code", "redundant-expr", "truthy-bool"]
# warn_unreachable = true
[tool.ruff.per-file-ignores]
"tests/**" = ["T20"]
"noxfile.py" = ["T20"]
[tool.pylint]
py-version = "3.8"
ignore-paths= ["src/nlpsig/_version.py"]
reports.output-format = "colorized"
similarities.ignore-imports = "yes"
messages_control.disable = [
"design",
"fixme",
"line-too-long",
"missing-module-docstring",
"wrong-import-position",
]