diff --git a/Makefile b/Makefile index 8eb88a70..b603ce7e 100644 --- a/Makefile +++ b/Makefile @@ -53,6 +53,8 @@ update_trusted: $(UPDATE_TRUSTED_IUC) ## Run the update script python3 scripts/update-tool.py goeckslab.yaml python3 scripts/update-tool.py eirene.yaml python3 scripts/update-tool.py lldelisle.yaml + python3 scripts/update-tool.py tools_q2d2.yaml + python3 scripts/update-tool.py ufz.yaml update_all: $(UPDATED_YAMLS) diff --git a/asaim.yaml.lock b/asaim.yaml.lock index 4daa9318..e84522ba 100644 --- a/asaim.yaml.lock +++ b/asaim.yaml.lock @@ -18,6 +18,7 @@ tools: - 734abc7ac21d - 751a694ec620 - 83c7d564b128 + - 8848455c0270 - aad3885b3216 - b723c120161a - ba931a59dd59 @@ -84,6 +85,7 @@ tools: - c19b16e5729c - e4574a4d09d8 - f7985e0479b9 + - f7e2f1eb3a16 tool_panel_section_label: Quality Control - name: format_cd_hit_output owner: bebatut diff --git a/bgruening.yaml b/bgruening.yaml index 952213ae..6595c25e 100644 --- a/bgruening.yaml +++ b/bgruening.yaml @@ -37,6 +37,10 @@ tools: owner: bgruening tool_panel_section_label: "Convert Formats" + - name: uniprot_rest_interface + owner: bgruening + tool_panel_section_label: Convert Formats + # SAM/BAM - name: sambamba_flagstat @@ -184,6 +188,10 @@ tools: owner: bgruening tool_panel_section_label: Imaging + - name: bioimage_inference + owner: bgruening + tool_panel_section_label: Imaging + - name: woundhealing_scratch_assay owner: bgruening tool_panel_section_label: Imaging @@ -322,6 +330,13 @@ tools: owner: bgruening tool_panel_section_label: Machine Learning + - name: flexynesis + owner: bgruening + tool_panel_section_label: Machine Learning + + - name: chatgpt_openai_api + owner: bgruening + tool_panel_section_label: Machine Learning # MAPPING @@ -355,7 +370,11 @@ tools: - name: itsx owner: bgruening tool_panel_section_label: Metagenomic Analysis - + + - name: motus + owner: bgruening + tool_panel_section_label: Metagenomic Analysis + - name: tiara owner: bgruening tool_panel_section_label: Metagenomic Analysis diff --git a/bgruening.yaml.lock b/bgruening.yaml.lock index 02efab2a..98541e05 100644 --- a/bgruening.yaml.lock +++ b/bgruening.yaml.lock @@ -21,6 +21,7 @@ tools: owner: bgruening revisions: - 04bfb8ee7e23 + - 3ae9331790a6 - 4e9a3745dce4 - 5376a7767fb3 - 57e2503e6039 @@ -39,6 +40,7 @@ tools: - 31dfed0f0eed - 391a19477a12 - 39881709807e + - 3e81299dfce3 - 4dada93ef525 - 7e2ee5f43778 - 8dbc700cb940 @@ -49,6 +51,7 @@ tools: revisions: - 2a5a0b61a84e - bb871fbe177f + - cfe1d6e23237 - fd0e8bda0154 tool_panel_section_label: Convert Formats - name: hictk @@ -59,6 +62,11 @@ tools: - a2e75bad2872 - d36215791ad3 tool_panel_section_label: Convert Formats +- name: uniprot_rest_interface + owner: bgruening + revisions: + - 95fb5712344f + tool_panel_section_label: Convert Formats - name: sambamba_flagstat owner: bgruening revisions: @@ -92,6 +100,7 @@ tools: - a6318f87f2cd - abba05ead5d7 - e009d8260be2 + - e7449b2c14bf tool_panel_section_label: Annotation - name: cpat owner: bgruening @@ -138,8 +147,10 @@ tools: owner: bgruening revisions: - 1ce9b1d72ec3 + - 1f0769f0b56b - 276f5d8712d5 - 291923e6f276 + - 3e4f8642c77e - 3ee0ef312022 - 8d4f03b5fe9d - cb8dfd28c16f @@ -202,6 +213,7 @@ tools: owner: bgruening revisions: - 8c99976de71e + - a34826ae0a73 - b61022e1b807 tool_panel_section_label: Assembly - name: split_file_to_collection @@ -224,6 +236,7 @@ tools: - 5127a713de83 - 5799092ffdff - 690c2caa367e + - 6ec1b853c8fd - 8ccbf07a5433 - ad1149b4f795 tool_panel_section_label: FASTA/FASTQ @@ -245,9 +258,17 @@ tools: - name: jbrowse2 owner: fubar revisions: + - 137e08517410 + - 2fff478aca4b + - 4aec47f872b3 - 56f9a6e0fe80 + - 69c6ea16c148 + - 878c27dfea9d + - af482048ca1a - b1260bca5fdc + - b55199c56abd - c017111e976a + - c4b77883c0a7 - dc3fe98e7b37 tool_panel_section_label: Graph/Display Data - name: plotly_ml_performance_plots @@ -257,6 +278,7 @@ tools: - 4fac53da862f - 62e3a4e8c54c - 85da91bbdbfb + - f234e2e59d76 tool_panel_section_label: Graph/Display Data - name: plotly_regression_performance_plots owner: bgruening @@ -268,8 +290,15 @@ tools: owner: bgruening revisions: - 030bfe6065d9 + - 9186100e75b5 - eda6dfae9617 tool_panel_section_label: Imaging +- name: bioimage_inference + owner: bgruening + revisions: + - b0f2d3b4a278 + - caea9ee1ffac + tool_panel_section_label: Imaging - name: woundhealing_scratch_assay owner: bgruening revisions: @@ -995,6 +1024,18 @@ tools: revisions: - 02fa7b2245e6 tool_panel_section_label: Machine Learning +- name: flexynesis + owner: bgruening + revisions: + - bd808d1c4e0c + tool_panel_section_label: Machine Learning +- name: chatgpt_openai_api + owner: bgruening + revisions: + - 08c658e9aa9e + - 7770a4bd42e2 + - dab494dce303 + tool_panel_section_label: Machine Learning - name: graphmap_align owner: bgruening revisions: @@ -1036,6 +1077,11 @@ tools: revisions: - 2cbd0d66aa08 tool_panel_section_label: Metagenomic Analysis +- name: motus + owner: bgruening + revisions: + - d20f3b9a59a2 + tool_panel_section_label: Metagenomic Analysis - name: tiara owner: bgruening revisions: @@ -1045,6 +1091,7 @@ tools: owner: rnateam revisions: - 6f28e90db932 + - 8e649f27aa0d - a65296ffb4a0 - bcfce5aac49c - bf28a8cff401 diff --git a/cheminformatics.yaml.lock b/cheminformatics.yaml.lock index af7c8f5b..7c0f9c2d 100644 --- a/cheminformatics.yaml.lock +++ b/cheminformatics.yaml.lock @@ -198,6 +198,7 @@ tools: - 2c5c7da26e08 - 49242402887b - 4c9d6b47045c + - 8302ab092300 - c066b5accacf - f0502d809c4b tool_panel_section_label: ChemicalToolBox @@ -728,12 +729,14 @@ tools: - a5f4b80e6769 - b8838a9aa31a - de4c80d17527 + - fac2c28b4c55 tool_panel_section_label: ChemicalToolBox - name: openbabel_remsmall owner: bgruening revisions: - 0c95b0f51114 - 11952f619e90 + - 81836d586797 - ac9567d307a2 - aebc671bae78 - c8d8caa9a54d @@ -752,6 +755,7 @@ tools: - 50dc8ca09a50 - 78640d0127ce - 8b23033ff72c + - 985ab0acd514 - 99517f9b780d - f27e2eaffb5f tool_panel_section_label: ChemicalToolBox @@ -765,6 +769,7 @@ tools: - 49d21d05f77c - 5b66a1684f18 - 9c15e92bed39 + - a638d8d13bb3 - a84187d7bda6 - eed751918a20 - f924a1728291 @@ -773,6 +778,7 @@ tools: owner: bgruening revisions: - 417845394cdf + - 50eaae9df8d3 - 53cf744d1c6f - a26f96c1f061 - a72ae2711a97 @@ -794,6 +800,7 @@ tools: - 9249b0e0e6bd - abceed0106cd - cc8ca507174f + - f70b83b730ac tool_panel_section_label: ChemicalToolBox - name: openbabel_multi_obgrep owner: bgruening @@ -806,6 +813,7 @@ tools: - 136ceea822f5 - 3ec5e9a716ac - 672b3365ddbc + - 75ee9c410951 - 7672039a0bb0 - a66827fc370d - ba2d56f16904 @@ -824,6 +832,7 @@ tools: - aedce3959676 - afd14e10a318 - d92ada24e4ad + - f5d7ffbb2d33 - f93f3e01abe8 tool_panel_section_label: ChemicalToolBox - name: openbabel_remove_protonation_state @@ -831,6 +840,7 @@ tools: revisions: - 00263ca6ffb8 - 0bf5331f62ef + - 22a866858b81 - 44488fa95d1d - 5dc2a6cd6da1 - 612c134546a2 @@ -845,6 +855,7 @@ tools: - 1400d1977e7b - 1c66bf08f687 - 37f6668ce540 + - 4242b4d68e9c - a072cb207571 - a9df9aae60bb - b59c91adeac1 @@ -859,6 +870,7 @@ tools: - 202e3a64859b - 80d78559a5a3 - 9a83f24376b0 + - 9adf3fae2771 - ab2b9d87b067 - bd678d7db2ae - c19608db6b15 @@ -873,6 +885,7 @@ tools: - 69e02cf88856 - 72d13f75b67c - 8ee975c49a3d + - 988085c7a0ea - a9ea2eac7300 - da0059ee548a - da03b00048b1 @@ -886,6 +899,7 @@ tools: - 43167f164076 - 6e4b7e0c61a6 - 716dcb5bbb71 + - 7b6fd1c273cd - 883fe4f7f1b2 - 976a5975b952 - bfb8555f0003 @@ -902,6 +916,7 @@ tools: - 65254472e5b4 - 854a7a169623 - b2569e22b40c + - c5de6c19eb06 - d751e92477ea - e289f65f6b91 tool_panel_section_label: ChemicalToolBox diff --git a/climate.yaml.lock b/climate.yaml.lock index 5987a822..51558617 100644 --- a/climate.yaml.lock +++ b/climate.yaml.lock @@ -16,7 +16,9 @@ tools: owner: climate revisions: - 706666d912d5 + - 988212a7466a - db8d76da4174 + - e6d1e9d6b399 tool_panel_section_label: Climate Analysis - name: climate_stripes owner: climate @@ -34,6 +36,7 @@ tools: - name: c3s owner: climate revisions: + - 21e8386cf36f - 250554670f72 - bd153c794da1 tool_panel_section_label: Climate Analysis @@ -214,6 +217,7 @@ tools: - 7e616a1bdb07 - 7f2ef7216cf8 - 90928b255abb + - ae344ccf9d62 - b1268b7544d3 - fcb6a19960c6 tool_panel_section_label: Graph/Display Data @@ -221,6 +225,7 @@ tools: owner: iuc revisions: - 10515715c940 + - 1a72f938213e - 391a4cc45fea - 3d059e9c2fba - a4d83ba2a1bc @@ -232,6 +237,7 @@ tools: owner: iuc revisions: - 0e7290688b50 + - 17b666467c32 - 637cf21db396 - 9c52a8130729 - d6c41b454cc1 @@ -243,6 +249,7 @@ tools: owner: iuc revisions: - 374e9062d874 + - 51c6ccaace7e - 53460afd5115 - '566197475670' - ca7cb0eaad62 @@ -253,6 +260,7 @@ tools: - 1acf88921176 - 299307abd804 - 3b12bf9b4b87 + - 5298e06f14f9 - 5fe1dc76176e - 87908c76ca8d - 9cec81e1b90e @@ -268,6 +276,7 @@ tools: - 398e5104f8a2 - 497d700a5229 - 536078949ae4 + - 6fc8bab811da - b0d96516e6a5 - fb50ab943396 tool_panel_section_label: Graph/Display Data diff --git a/cpt.yaml b/cpt.yaml index e508053b..3d0ecd1a 100644 --- a/cpt.yaml +++ b/cpt.yaml @@ -63,10 +63,11 @@ tools: - name: cpt_lipory owner: cpt tool_panel_section_label: Annotation - + - name: cpt_intersect_adjacent owner: cpt tool_panel_section_label: Annotation +## deprecated tool, replaced by cpt_intersect_adj - name: cpt_related_genomes_nuc owner: cpt @@ -75,6 +76,7 @@ tools: - name: cpt_related_genomes_prot owner: cpt tool_panel_section_label: Phylogenetics +## deprecated tool, replaced by cpt_protein_blast_grouping - name: cpt_xmfa_to_table owner: cpt @@ -127,3 +129,16 @@ tools: - name: cpt_fasta_translate owner: cpt tool_panel_section_label: Annotation + + - name: cpt_protein_blast_grouping + owner: cpt + tool_panel_section_label: Annotation + + - name: cpt_prophage_relatedness + owner: cpt + tool_panel_section_label: Annotation + + - name: cpt_intersect_adj + owner: cpt + tool_panel_section_label: Annotation + diff --git a/cpt.yaml.lock b/cpt.yaml.lock index 5b9e4320..645d2052 100644 --- a/cpt.yaml.lock +++ b/cpt.yaml.lock @@ -182,3 +182,18 @@ tools: revisions: - cb42bee49abb tool_panel_section_label: Annotation +- name: cpt_protein_blast_grouping + owner: cpt + revisions: + - 11701cc63084 + tool_panel_section_label: Annotation +- name: cpt_prophage_relatedness + owner: cpt + revisions: + - 7ba8b1f0fdf0 + tool_panel_section_label: Annotation +- name: cpt_intersect_adj + owner: cpt + revisions: + - 00aab5199327 + tool_panel_section_label: Annotation diff --git a/diverse.yaml b/diverse.yaml index c926eb13..2f0208b8 100644 --- a/diverse.yaml +++ b/diverse.yaml @@ -7,10 +7,4 @@ tools: - name: srnapipe owner: brasset_jensen tool_panel_section_label: RNA Analysis - - name: genomad_end_to_end - owner: ufz - tool_panel_section_label: Metagenomic Analysis - - name: genomad_build_database - owner: ufz - tool_panel_section_label: Data Managers diff --git a/diverse.yaml.lock b/diverse.yaml.lock index eaa80812..d366f4dc 100644 --- a/diverse.yaml.lock +++ b/diverse.yaml.lock @@ -7,13 +7,3 @@ tools: revisions: - 71d5983dd41e tool_panel_section_label: RNA Analysis -- name: genomad_end_to_end - owner: ufz - revisions: - - 955e33326e20 - tool_panel_section_label: Metagenomic Analysis -- name: genomad_build_database - owner: ufz - revisions: - - c4ec3d81eeee - tool_panel_section_label: Data Managers diff --git a/ecology.yaml b/ecology.yaml index 58fc211a..f58ff13c 100644 --- a/ecology.yaml +++ b/ecology.yaml @@ -309,6 +309,10 @@ tools: owner: devteam tool_panel_section_label: 'Statistics' + - name: divand_full_analysis + owner: ecology + tool_panel_section_label: 'Climate Analysis' + - name: venn_list owner: peterjc tool_panel_section_label: 'Graph/Display Data' @@ -814,6 +818,14 @@ tools: owner: ecology tool_panel_section_label: 'Data and Metadata Management' + - name: annotations_template + owner: ecology + tool_panel_section_label: 'Data and Metadata Management' + + - name: eml_validate + owner: ecology + tool_panel_section_label: 'Data and Metadata Management' + - name: makeeml owner: ecology tool_panel_section_label: 'Data and Metadata Management' diff --git a/ecology.yaml.lock b/ecology.yaml.lock index dd013660..3032ad56 100644 --- a/ecology.yaml.lock +++ b/ecology.yaml.lock @@ -207,6 +207,7 @@ tools: revisions: - 0a8c6b61f0f4 - 12615d397df7 + - 86755160afbf - d698c222f354 - ddf54b12c295 - f46f0e4f75c4 @@ -223,6 +224,7 @@ tools: - 6595517c2dd8 - 6e8d94597139 - 9cd341095afd + - aff5135563c6 tool_panel_section_label: Text Manipulation - name: prinseq owner: iuc @@ -449,6 +451,11 @@ tools: revisions: - 24e01abf9e34 tool_panel_section_label: Statistics +- name: divand_full_analysis + owner: ecology + revisions: + - 484930fdc002 + tool_panel_section_label: Climate Analysis - name: venn_list owner: peterjc revisions: @@ -488,6 +495,7 @@ tools: - 7e616a1bdb07 - 7f2ef7216cf8 - 90928b255abb + - ae344ccf9d62 - b1268b7544d3 - fcb6a19960c6 tool_panel_section_label: Graph/Display Data @@ -514,6 +522,7 @@ tools: owner: iuc revisions: - 10515715c940 + - 1a72f938213e - 391a4cc45fea - 3d059e9c2fba - a4d83ba2a1bc @@ -525,6 +534,7 @@ tools: owner: iuc revisions: - 0e7290688b50 + - 17b666467c32 - 637cf21db396 - 9c52a8130729 - d6c41b454cc1 @@ -536,6 +546,7 @@ tools: owner: iuc revisions: - 374e9062d874 + - 51c6ccaace7e - 53460afd5115 - '566197475670' - ca7cb0eaad62 @@ -546,6 +557,7 @@ tools: - 1acf88921176 - 299307abd804 - 3b12bf9b4b87 + - 5298e06f14f9 - 5fe1dc76176e - 87908c76ca8d - 9cec81e1b90e @@ -561,6 +573,7 @@ tools: - 398e5104f8a2 - 497d700a5229 - 536078949ae4 + - 6fc8bab811da - b0d96516e6a5 - fb50ab943396 tool_panel_section_label: Graph/Display Data @@ -884,10 +897,12 @@ tools: revisions: - 47e5dbc3e790 - 71e5fa25b8a2 + - e9f8633db0a2 tool_panel_section_label: FASTA/FASTQ - name: fastqc owner: devteam revisions: + - 2c64fded1286 - 3d0c7bdf12f5 - 5ec9f6bceaee - e7b2202befea @@ -904,6 +919,7 @@ tools: - bf675f34b056 - c19b16e5729c - f7985e0479b9 + - f7e2f1eb3a16 tool_panel_section_label: Quality Control - name: mothur_sffinfo owner: iuc @@ -919,6 +935,7 @@ tools: owner: devteam revisions: - 56389130cb63 + - 9115b978ce10 - f1dc2a761c30 tool_panel_section_label: FASTA/FASTQ - name: xarray_metadata_info @@ -1387,6 +1404,7 @@ tools: owner: ecology revisions: - 055a934a380f + - 28c8f085d1b4 tool_panel_section_label: Get Data - name: obis_data owner: ecology @@ -1500,6 +1518,8 @@ tools: owner: ecology revisions: - 3b0fa963ae3e + - 5faa25ba905e + - 67b2cd9c2954 - d4f168043757 - debfa8a223c0 tool_panel_section_label: Data and Metadata Management @@ -1507,24 +1527,32 @@ tools: owner: ecology revisions: - 32707c9f5261 + - 672e25c2c8c8 - 6de4b4f70b7b - 8631291a1527 + - c223db6625c1 tool_panel_section_label: Data and Metadata Management - name: raster_template owner: ecology revisions: - 06e29cdc08bf + - 36150f04b524 + - 9eaf84bf856f - b34c5a70b706 tool_panel_section_label: Data and Metadata Management - name: vector_template owner: ecology revisions: - 330f15f2ad3f + - 40eb35199537 - 559744b4c50c + - c65dd54f9807 tool_panel_section_label: Data and Metadata Management - name: entities_template owner: ecology revisions: + - 1b11e38718af + - 299db57196ac - 5bfceb4ef59b - 8de58d879d6e tool_panel_section_label: Data and Metadata Management @@ -1534,19 +1562,35 @@ tools: - 0fe3b8bd9d8b - 4f5816b57c13 - a5f887cfcf94 + - d53b708cb348 + - ea302cc18332 tool_panel_section_label: Data and Metadata Management - name: taxo_cov_template owner: ecology revisions: - 0cfc9b6da2ac + - 20224597fa2c - 2af7401f13e0 + - 4f2d8a7c97fa - 9507334a3303 - a45fa46f8010 tool_panel_section_label: Data and Metadata Management +- name: annotations_template + owner: ecology + revisions: + - dbba9bedd4bd + tool_panel_section_label: Data and Metadata Management +- name: eml_validate + owner: ecology + revisions: + - ad96b20423cf + tool_panel_section_label: Data and Metadata Management - name: makeeml owner: ecology revisions: - 34dcb86a9351 + - 49f38336f28f + - 4cf24a95c4ff - 59349973537f - 642e31c435c9 - 8a697f446051 @@ -1561,16 +1605,21 @@ tools: - 3d14d6a4ef7c - 409d9329d2be - 5c0290c4225a + - 6fc2341a92cb - bd8b3e7541d5 + - c1d2c0922362 tool_panel_section_label: Data and Metadata Management - name: ecoregion_geonearestneighbor owner: ecology revisions: + - 36637718c51d - 5cde56683579 tool_panel_section_label: Ecoregionalization - name: ecoregion_brt_analysis owner: ecology revisions: + - 2129484beb61 + - a56c413f3a98 - f0d6938d0451 - f8962f1c832a - fc621f3f8226 @@ -1578,6 +1627,7 @@ tools: - name: ecoregion_taxa_seeker owner: ecology revisions: + - 18c4cd785a74 - 788b118910a7 - 9dc992f80c25 - e3cd588fd14a @@ -1588,10 +1638,12 @@ tools: - 374555fc30bd - 3d750279158b - b38b954b92b9 + - c6b1bf7b0ac6 tool_panel_section_label: Ecoregionalization - name: ecoregion_cluster_estimate owner: ecology revisions: + - 001d7d101915 - 0f6542d0986e - 1b9522671e90 - e94a25eed489 @@ -1601,6 +1653,7 @@ tools: revisions: - 24a81631a8b5 - 32849c52aa54 + - 844b5bf84164 - edb8d19735a6 tool_panel_section_label: Ecoregionalization - name: map_shp @@ -1644,6 +1697,7 @@ tools: - name: hirondelle_crim owner: ecology revisions: + - 52baddd15640 - afede0916f0a tool_panel_section_label: GIS Data Handling - name: aquainfra_importer @@ -1672,4 +1726,5 @@ tools: owner: ecology revisions: - 12870a79d56b + - 9d689f8c9ce4 tool_panel_section_label: Annotation diff --git a/eirene.yaml b/eirene.yaml index 41dae524..046d6eb3 100644 --- a/eirene.yaml +++ b/eirene.yaml @@ -155,6 +155,10 @@ tools: owner: recetox tool_panel_section_label: Metabolomics + - name: rename_annotated_feature + owner: recetox + tool_panel_section_label: Metabolomics + - name: assign_ri_from_comment owner: recetox tool_panel_section_label: Metabolomics @@ -174,3 +178,67 @@ tools: - name: xcms_plot_eic owner: workflow4metabolomics tool_panel_section_label: Metabolomics + + - name: spec2vec_similarity + owner: recetox + tool_panel_section_label: Metabolomics + + - name: spec2vec_training + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_snplot + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_histnoise + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_kmdnoise + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_isofiltr + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_mfassign + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_mfassigncho + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_recal + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_recallist + owner: recetox + tool_panel_section_label: Metabolomics + + - name: mfassignr_findrecalseries + owner: recetox + tool_panel_section_label: Metabolomics + + - name: rcx_tk + owner: recetox + tool_panel_section_label: Metabolomics + + - name: target_screen + owner: recetox + tool_panel_section_label: Metabolomics + + - name: ms2deepscore_config_generator + owner: recetox + tool_panel_section_label: Metabolomics + + - name: ms2deepscore_similarity + owner: recetox + tool_panel_section_label: Metabolomics + + - name: ms2deepscore_training + owner: recetox + tool_panel_section_label: Metabolomics diff --git a/eirene.yaml.lock b/eirene.yaml.lock index e9e6e167..8a3d8619 100644 --- a/eirene.yaml.lock +++ b/eirene.yaml.lock @@ -8,15 +8,19 @@ tools: - 32b66fb6a6a0 - 6ba3526237e0 - 702a849c1e0e + - b3413f335327 + - b341cfd4baf8 - e7305ba0dd38 - ebca18e223bf tool_panel_section_label: Metabolomics - name: recetox_aplcms_recover_weaker_signals owner: recetox revisions: + - 24278c6b6d1c - 99d118321d5f - a9bb2ccc53de - c3d4b82c7e5d + - d7f5878a98c3 - e0536ff73f36 - e2cb970d99dd tool_panel_section_label: Metabolomics @@ -26,6 +30,8 @@ tools: - 02c772a49998 - 1574b8a29e6f - 474d2bcb22e4 + - 51332c2520c7 + - 9064aecc78a7 - bd1956f4c2aa - d69ec1171d71 tool_panel_section_label: Metabolomics @@ -34,9 +40,11 @@ tools: revisions: - 149b9cc7499b - 15aae2bfa67d + - 18ec7635bac6 - 550667ce03f1 - 60a09c4fa7a0 - b9b19a74ac01 + - f3a18e020cdd tool_panel_section_label: Metabolomics - name: recetox_aplcms_remove_noise owner: recetox @@ -46,22 +54,28 @@ tools: - 8fb5e458831f - b5a1f35abd8a - d90187b0f247 + - ea0758b41473 + - ffbabefbd2e2 tool_panel_section_label: Metabolomics - name: recetox_aplcms_merge_known_table owner: recetox revisions: - 04892b463957 + - 17a48d0a80f4 - 396a3b1eafd0 - 8ecb609cc265 + - cf061712a184 - dd7bbc2b99d1 - fb95cb4a6b9b tool_panel_section_label: Metabolomics - name: recetox_aplcms_compute_template owner: recetox revisions: + - 134be5abb208 - 481d769e2f7a - 4963811b6dec - 51e37adf988f + - dfebc82ba1f0 - e2dc815e1b2c - f8c4db95eec3 tool_panel_section_label: Metabolomics @@ -71,7 +85,9 @@ tools: - 1a01ffa85adc - 2b6bfa234d8b - 2d13fcae8b84 + - 79ad928a0dae - 7b42ee54d757 + - c53a97599181 - d5c638b72ce4 tool_panel_section_label: Metabolomics - name: rmassbank @@ -85,6 +101,7 @@ tools: owner: recetox revisions: - 0b86600b715e + - 6cd2a9e6ac49 - 90dc951da294 - e5fcba090b10 tool_panel_section_label: Metabolomics @@ -391,6 +408,7 @@ tools: - 425c0494ec2d - 6480c6d5fa36 - b77023c41c76 + - bf32ae95a06f - dbbedb14b44c - e424fa636281 tool_panel_section_label: Metabolomics @@ -437,8 +455,14 @@ tools: - name: use_theoretical_mz_annotations owner: recetox revisions: + - b3d41b1fcb18 - e0cac9994a72 tool_panel_section_label: Metabolomics +- name: rename_annotated_feature + owner: recetox + revisions: + - 268fcec93d9c + tool_panel_section_label: Metabolomics - name: assign_ri_from_comment owner: recetox revisions: @@ -466,3 +490,99 @@ tools: revisions: - 51015f22fcb7 tool_panel_section_label: Metabolomics +- name: spec2vec_similarity + owner: recetox + revisions: + - 721a4e666191 + tool_panel_section_label: Metabolomics +- name: spec2vec_training + owner: recetox + revisions: + - 9d917de87cca + tool_panel_section_label: Metabolomics +- name: mfassignr_snplot + owner: recetox + revisions: + - 434fa3233e96 + - 7579b0cda787 + - ccd9b0c1aee6 + tool_panel_section_label: Metabolomics +- name: mfassignr_histnoise + owner: recetox + revisions: + - 12b63108d645 + - 5d99cb9755da + - e93401e2ad89 + tool_panel_section_label: Metabolomics +- name: mfassignr_kmdnoise + owner: recetox + revisions: + - 39a642fc9638 + - 99d021734000 + - a9fba8378048 + tool_panel_section_label: Metabolomics +- name: mfassignr_isofiltr + owner: recetox + revisions: + - e4ddc3bc7e15 + - e7ef7718505d + - ef0388b42f7a + tool_panel_section_label: Metabolomics +- name: mfassignr_mfassign + owner: recetox + revisions: + - 9cbbfd54d7c4 + - d2bad53dd220 + - d5745e78fcfe + tool_panel_section_label: Metabolomics +- name: mfassignr_mfassigncho + owner: recetox + revisions: + - b92c9388240a + - b96a462d9c3f + - db058392cb2e + tool_panel_section_label: Metabolomics +- name: mfassignr_recal + owner: recetox + revisions: + - 13ef8b748af9 + - 3ea8ed561c5a + - a3113a7c1767 + tool_panel_section_label: Metabolomics +- name: mfassignr_recallist + owner: recetox + revisions: + - 1104682fb7cc + - 7e5ccc8b6f6e + - ddb9d330ecc0 + tool_panel_section_label: Metabolomics +- name: mfassignr_findrecalseries + owner: recetox + revisions: + - ad4176b336dc + tool_panel_section_label: Metabolomics +- name: rcx_tk + owner: recetox + revisions: + - 54401f9d1a30 + tool_panel_section_label: Metabolomics +- name: target_screen + owner: recetox + revisions: + - d4c2d5bc0524 + tool_panel_section_label: Metabolomics +- name: ms2deepscore_config_generator + owner: recetox + revisions: + - 7e4ac334fc33 + tool_panel_section_label: Metabolomics +- name: ms2deepscore_similarity + owner: recetox + revisions: + - 58c95171a0d3 + tool_panel_section_label: Metabolomics +- name: ms2deepscore_training + owner: recetox + revisions: + - 0a0529822d91 + tool_panel_section_label: Metabolomics diff --git a/europe-custom.yaml.lock b/europe-custom.yaml.lock index 13bd0661..75ec196d 100644 --- a/europe-custom.yaml.lock +++ b/europe-custom.yaml.lock @@ -145,6 +145,7 @@ tools: - 734abc7ac21d - 751a694ec620 - 83c7d564b128 + - 8848455c0270 - aad3885b3216 - b723c120161a - ba931a59dd59 @@ -617,6 +618,7 @@ tools: - 19237efe98d1 - 3f0dd362b755 - 57e5d9382f36 + - 7ce0fe11b411 - 9dd5373f6a5a - d20e391eb22f - e7242484929c @@ -625,6 +627,7 @@ tools: - name: meme_fimo owner: iuc revisions: + - 01f5d04846c4 - 0c5239d1aa65 - 40b8472e91ca - c1a9a297ba8b @@ -702,6 +705,7 @@ tools: - name: khmer_filter_abundance owner: iuc revisions: + - 29a4d6e2ae9c - 8c6433857aa8 - 97f65399e30d - a4970dfc331c @@ -711,6 +715,7 @@ tools: - name: khmer_filter_below_abundance_cutoff owner: iuc revisions: + - 00f7064c564b - 19607c740d19 - 569001af897d - b469ab47b490 @@ -720,6 +725,7 @@ tools: - name: khmer_extract_partitions owner: iuc revisions: + - 1061711538c6 - 2c763fb18010 - 518ba4a77274 - 7d8138b4a593 @@ -734,11 +740,13 @@ tools: - a02efb62565b - c0caca5af183 - e0de12ae3fc2 + - e699e2747356 tool_panel_section_label: Metagenomic Analysis - name: khmer_count_median owner: iuc revisions: - 06d1d91c67e5 + - 570505540a7b - 5efc5f21d0c1 - 77410799e8e9 - 7aa811aa3b93 @@ -749,6 +757,7 @@ tools: revisions: - 5a0fa29951ae - 766ec3dad7ff + - 8388fe31d604 - b7429b53be2a - c393687bd857 - e562293ee5ec @@ -756,6 +765,7 @@ tools: - name: khmer_normalize_by_median owner: iuc revisions: + - 4d23ab83ea29 - 557cc16931f4 - b1fe2ef3d244 - bfd859f04a89 @@ -768,6 +778,7 @@ tools: - 09c6a051c5fd - 385a965c6f87 - 55109291a355 + - 65b382bf9b7c - 792d520ba676 - c018a72b523e tool_panel_section_label: Metagenomic Analysis @@ -876,10 +887,12 @@ tools: - name: pear owner: iuc revisions: + - 037f0acc7830 - 240f611a46f3 - 2f804526f5fd - 581e52f03c5d - b4c6f054210a + - f69501361cec tool_panel_section_label: FASTA/FASTQ - name: fastx_artifacts_filter owner: devteam @@ -1076,6 +1089,7 @@ tools: - bf675f34b056 - c19b16e5729c - f7985e0479b9 + - f7e2f1eb3a16 tool_panel_section_label: Quality Control - name: mira_assembler owner: peterjc @@ -1147,6 +1161,7 @@ tools: - 0a563fd2f22e - 318b2a9d54dd - 3ea5a2a63fa2 + - 4014de1b6daf - 4074fc1940e2 - 41929aa1e7f3 - 44959aa06aeb @@ -1713,6 +1728,7 @@ tools: - 36dc3690a82c - 5b80f544c67f - 5c7b70713fb5 + - 6322be79bd8e - 74aebe30fb52 - 8f92c2b26e6d - 9473cd297a76 @@ -2097,6 +2113,7 @@ tools: revisions: - 01fd33bc2e75 - 072f606e2e69 + - 07396b423218 - 0fba2c15b40d - 1001172b5089 - 21687e35f066 @@ -2107,6 +2124,7 @@ tools: - 912a8ff07fc9 - a531317a3527 - b03984136ce4 + - bf06b66ab5c2 - c37b684e7f4e - cb30a39055d0 - d267bcfdc8fe diff --git a/galaxy-australia.yaml.lock b/galaxy-australia.yaml.lock index f5dc69a5..62869d31 100644 --- a/galaxy-australia.yaml.lock +++ b/galaxy-australia.yaml.lock @@ -9,6 +9,7 @@ tools: - 2f7702fd0a4c - 58854e2e6654 - 5b85006245f3 + - 6ab1a261520a - 7ae9d78b06f5 - 7fbec959cf2b - a58f7eb0df2c diff --git a/genome-annotation.yaml.lock b/genome-annotation.yaml.lock index 88419dd1..b3e51fa7 100644 --- a/genome-annotation.yaml.lock +++ b/genome-annotation.yaml.lock @@ -103,6 +103,7 @@ tools: - 1440ae06552f - 1e62c28ba91d - 2a5b8b9936bf + - 2babe6d5c561 - 2dd755c1c6ff - 4048d82f0c88 - 41030a6c03b7 @@ -121,6 +122,7 @@ tools: revisions: - 09855551d713 - 28433faa6e42 + - bd0e53f3a891 - ca6d970d931c - f5075dee9d6b tool_panel_section_label: Annotation @@ -132,6 +134,7 @@ tools: - 7be22100e5e1 - 86c89c3bd99d - dc027fa56d55 + - f1e653756174 tool_panel_section_label: Annotation - name: fasta_stats owner: simon-gladman @@ -302,6 +305,7 @@ tools: revisions: - 57db282ca204 - e1502e4f8725 + - f8d72275878e - name: compleasm owner: iuc revisions: diff --git a/goeckslab.yaml.lock b/goeckslab.yaml.lock index 7e586269..fba82351 100644 --- a/goeckslab.yaml.lock +++ b/goeckslab.yaml.lock @@ -57,4 +57,5 @@ tools: owner: goeckslab revisions: - 09c099c99888 + - 302ddf03402f tool_panel_section_label: Imaging diff --git a/imaging.yaml.lock b/imaging.yaml.lock index 1fa99df1..a23fee14 100644 --- a/imaging.yaml.lock +++ b/imaging.yaml.lock @@ -10,6 +10,7 @@ tools: owner: bgruening revisions: - 5a810dc963f4 + - 77bc1c2e1b91 - b333df978624 - f0656d0f2a4d tool_panel_section_label: Imaging @@ -23,6 +24,7 @@ tools: - 8dc02c854048 - b74693340624 - bf590a9733ed + - ca362a9bfa20 tool_panel_section_label: Imaging - name: color_deconvolution owner: imgteam @@ -123,6 +125,7 @@ tools: - 2d1de6e7b113 - 3aa2d054848a - 43c80f3c3b60 + - 5907be5a8d7c tool_panel_section_label: Imaging - name: label_to_binary owner: imgteam @@ -190,6 +193,7 @@ tools: - 859dd1c11ac0 - a9972c993bed - d78372040976 + - e8c9e104e109 tool_panel_section_label: Imaging - name: points_association_nn owner: imgteam @@ -292,6 +296,7 @@ tools: owner: imgteam revisions: - 2ad6350df85b + - 5411384e5e1d - 90385ec28b34 - a80f92ec6f89 - dd513c9f5230 @@ -301,6 +306,7 @@ tools: revisions: - 30ca5d5d03ec - 9bd039f46843 + - de611b3b5ae8 tool_panel_section_label: Imaging - name: labelimage2points owner: imgteam @@ -425,6 +431,7 @@ tools: revisions: - 182994b12622 - 33f6b1f921e7 + - 91b8f4730a93 - f62303e87275 tool_panel_section_label: Imaging - name: imagej2_bunwarpj_compare_elastic_raw @@ -433,6 +440,7 @@ tools: - 1bffabc15695 - 2be338fc671e - 3d5f59603e13 + - da91b5eaf92d tool_panel_section_label: Imaging - name: imagej2_bunwarpj_compose_raw_elastic owner: imgteam @@ -440,11 +448,13 @@ tools: - 1bf7e70e67f9 - 4deffc9540a3 - 8d357579e407 + - bdc70b34153a tool_panel_section_label: Imaging - name: imagej2_analyze_particles_binary owner: imgteam revisions: - 1dd5396c734a + - 862af85a50ec - ae4ae9c5c56c - aeb9bb864b8c tool_panel_section_label: Imaging @@ -452,6 +462,7 @@ tools: owner: imgteam revisions: - 49b5288dcd8c + - 5f5b7185bc16 - 768825d9034a - f6df6830d5ec tool_panel_section_label: Imaging @@ -460,12 +471,14 @@ tools: revisions: - 1a7c29d5fc11 - 666af1279007 + - 69e28b06e027 - dc3935a0165a tool_panel_section_label: Imaging - name: imagej2_noise owner: imgteam revisions: - 3f6599ec7d30 + - 73cc4e6a741d - 756e062741dc - 7a44772cc89f tool_panel_section_label: Imaging @@ -473,6 +486,7 @@ tools: owner: imgteam revisions: - 5023cbf98ca3 + - 633bea9c8ee0 - 8e608a6e44ac - c8dfbf4b899c tool_panel_section_label: Imaging @@ -482,6 +496,7 @@ tools: - 7baf811ed973 - c8bb47840c8d - f3c9192bd0b9 + - f7ae316b00e4 tool_panel_section_label: Imaging - name: imagej2_bunwarpj_compose_raw owner: imgteam @@ -489,11 +504,13 @@ tools: - 6c47d8a43207 - 8c0ace7ae77c - 93b416f8e9e3 + - f068e9171af2 tool_panel_section_label: Imaging - name: imagej2_enhance_contrast owner: imgteam revisions: - 056e74fbbf6c + - 1f92b1da556b - edfc597fb180 - ef3de3e84817 tool_panel_section_label: Imaging @@ -501,6 +518,7 @@ tools: owner: imgteam revisions: - 29b39f5b0e69 + - 4409f9eb9433 - 6a07f71806bb - e2622ebb5ce4 tool_panel_section_label: Imaging @@ -508,12 +526,14 @@ tools: owner: imgteam revisions: - 0a0d2dfd17e0 + - 711adedc5bb8 - ab54024c0a88 - e9243cad1d67 tool_panel_section_label: Imaging - name: imagej2_watershed_binary owner: imgteam revisions: + - 29aca8eebdaa - 5b154339fd90 - aeae7e29d525 - b143159845b4 @@ -521,6 +541,7 @@ tools: - name: imagej2_bunwarpj_raw_transform owner: imgteam revisions: + - 69e951528a0b - 95b7592729e2 - aa4a5a8c4cfd - eabdcf6ad900 @@ -530,12 +551,14 @@ tools: revisions: - 53fb6f4afcc8 - 6d7dd2194b4c + - c11777ffe5b1 - dd20ee3092e3 tool_panel_section_label: Imaging - name: imagej2_analyze_skeleton owner: imgteam revisions: - 3272e0439968 + - 50f2b961b192 - bb84f130a4e1 - bdee06a1bcfa tool_panel_section_label: Imaging @@ -545,12 +568,14 @@ tools: - 125641435c4b - 42ba21dc9ea6 - b95f87118c6f + - f9f2d9746a01 tool_panel_section_label: Imaging - name: imagej2_bunwarpj_compare_raw owner: imgteam revisions: - 77411a986a70 - 9349961e09ce + - b0da913f048e - d17be9aef142 tool_panel_section_label: Imaging - name: imagej2_bunwarpj_convert_to_raw @@ -559,10 +584,12 @@ tools: - 0cdd96322600 - 7f9840d3b7e7 - 95fb6fa70c2f + - bd2aadf0f589 tool_panel_section_label: Imaging - name: imagej2_make_binary owner: imgteam revisions: + - 1cf9771e0e53 - 6e8be21a505c - baa308e2533a - d3e8ef83f3bf @@ -570,6 +597,7 @@ tools: - name: imagej2_sharpen owner: imgteam revisions: + - 418b1fa32b83 - 49e29abe0fce - 4c43ba752312 - a84f2cbf091b @@ -580,17 +608,20 @@ tools: - 423400b3c47f - 6840ce593a91 - 7121957d0bbf + - e781a17b3c14 tool_panel_section_label: Imaging - name: imagej2_adjust_threshold_binary owner: imgteam revisions: - 29a4d422f32a + - 2b007b1e6c1b - da29019170f1 - f1ba33cd9edf tool_panel_section_label: Imaging - name: imagej2_math owner: imgteam revisions: + - d426c25946d4 - d48c999b3b96 - d7fbe9662213 - dbacd5d06c27 @@ -601,12 +632,14 @@ tools: - 301f24849032 - 39b2bc251b2f - 55bf135d6b0c + - f72f8e6787cd tool_panel_section_label: Imaging - name: imagej2_bunwarpj_adapt_transform owner: imgteam revisions: - 5d633d30316e - 706af1d7028a + - c4774c1a35ea - fa64e8aed5a5 tool_panel_section_label: Imaging - name: unzip @@ -875,5 +908,6 @@ tools: - name: background_removal owner: imgteam revisions: + - 6e9e98a7be4e - e2c6bedc6b73 tool_panel_section_label: Imaging diff --git a/materials.yaml b/materials.yaml index 801ecf38..36ac0bb3 100644 --- a/materials.yaml +++ b/materials.yaml @@ -51,3 +51,7 @@ tools: - name: pm_muairss_read owner: muon-spectroscopy-computational-project tool_panel_section_label: Muon Spectroscopy + + - name: mudirac + owner: muon-spectroscopy-computational-project + tool_panel_section_label: Muon Spectroscopy \ No newline at end of file diff --git a/materials.yaml.lock b/materials.yaml.lock index 065c2ecc..febdc783 100644 --- a/materials.yaml.lock +++ b/materials.yaml.lock @@ -81,3 +81,8 @@ tools: - 40071ff77285 - eb6382889b92 tool_panel_section_label: Muon Spectroscopy +- name: mudirac + owner: muon-spectroscopy-computational-project + revisions: + - eaf0f01cc0f6 + tool_panel_section_label: Muon Spectroscopy diff --git a/metabolomics.yaml.lock b/metabolomics.yaml.lock index b74b4d53..998ce0eb 100644 --- a/metabolomics.yaml.lock +++ b/metabolomics.yaml.lock @@ -6,6 +6,7 @@ tools: owner: lecorguille revisions: - 11ab2081bd4a + - 6de175c1f6ef - 86a20118e743 tool_panel_section_label: Metabolomics - name: genform @@ -18,6 +19,7 @@ tools: revisions: - 15646e937936 - 3bd53dcfa438 + - 6550698fe60f - b02d1992a43a tool_panel_section_label: Metabolomics - name: xcms_plot_chromatogram @@ -25,17 +27,20 @@ tools: revisions: - 024974037c4e - 271c9d5f0d10 + - c8bef8f6a1cb tool_panel_section_label: Metabolomics - name: xcms_merge owner: lecorguille revisions: - 47f9b1fd5ce6 - 5bd125a3f3b0 + - 6d475a389abc - a301f001835c tool_panel_section_label: Metabolomics - name: xcms_group owner: lecorguille revisions: + - 71572faf938e - 9e45e1c404a4 - d45a786cbc40 - fe4002ac5193 @@ -43,6 +48,7 @@ tools: - name: xcms_refine owner: workflow4metabolomics revisions: + - 090b33a9981c - eb115eb8f25c tool_panel_section_label: Metabolomics - name: xcms_retcor @@ -51,6 +57,7 @@ tools: - 4bfef820569b - 7faadba7c625 - aa252eec9229 + - d2b82d89f848 tool_panel_section_label: Metabolomics - name: xcms_fillpeaks owner: lecorguille @@ -58,11 +65,13 @@ tools: - 26d77e9ceb49 - 3bc94c3abb28 - de0d85537ee3 + - ec9aebabc1d2 tool_panel_section_label: Metabolomics - name: camera_annotate owner: lecorguille revisions: - 1c30ff90f3ae + - 3d63a762954a - 73d82de36369 tool_panel_section_label: Metabolomics - name: xcms_summary @@ -70,6 +79,7 @@ tools: revisions: - 018a9771de28 - 27e7da5f6848 + - 444e3ed135e3 - acc0a4a366c1 tool_panel_section_label: Metabolomics - name: camera_combinexsannos @@ -81,47 +91,56 @@ tools: - name: mspurity_flagremove owner: computational-metabolomics revisions: + - 816bac69e03e - 8dcfbb7f917a tool_panel_section_label: Metabolomics - name: mspurity_puritya owner: computational-metabolomics revisions: - 3d6356bcf998 + - 416460f611cc tool_panel_section_label: Metabolomics - name: mspurity_frag4feature owner: computational-metabolomics revisions: + - 31f64ff8320d - 61ebae7e09f5 tool_panel_section_label: Metabolomics - name: mspurity_filterfragspectra owner: computational-metabolomics revisions: + - 0a0f22586cad - 1e6b7c4d99cd tool_panel_section_label: Metabolomics - name: mspurity_averagefragspectra owner: computational-metabolomics revisions: + - 406ae6769162 - 4207233ead9c tool_panel_section_label: Metabolomics - name: mspurity_createdatabase owner: computational-metabolomics revisions: - 600a866a510c + - fa84bfaab681 tool_panel_section_label: Metabolomics - name: mspurity_createmsp owner: computational-metabolomics revisions: - d1d73007a255 + - f98b4bb0fa58 tool_panel_section_label: Metabolomics - name: mspurity_dimspredictpuritysingle owner: computational-metabolomics revisions: - 3959cddb01a6 + - b563d5fe4fc0 tool_panel_section_label: Metabolomics - name: mspurity_purityx owner: computational-metabolomics revisions: - 0f646a3e0a3f + - d84cc9960035 tool_panel_section_label: Metabolomics - name: dimspy_process_scans owner: computational-metabolomics @@ -187,6 +206,7 @@ tools: owner: yguitton revisions: - 2066efbafd7c + - 93508ea69eb5 - c75532b75ba1 tool_panel_section_label: Metabolomics - name: nmr_preprocessing @@ -194,6 +214,7 @@ tools: revisions: - 5b06800f3449 - 68e2d63bece0 + - 6e837e9352a2 tool_panel_section_label: Metabolomics - name: nmr_alignment owner: marie-tremblay-metatoul @@ -211,11 +232,13 @@ tools: owner: melpetera revisions: - 016780b192a6 + - 23314e1192d4 - 73892ef177e3 tool_panel_section_label: Metabolomics - name: normalization owner: marie-tremblay-metatoul revisions: + - 221cbd549c40 - 3d00a98974b7 - f9554d5bb47e tool_panel_section_label: Metabolomics @@ -256,6 +279,7 @@ tools: owner: jfrancoismartin revisions: - 1422de181204 + - a3147e3d66e2 tool_panel_section_label: Metabolomics - name: asca owner: marie-tremblay-metatoul @@ -271,6 +295,7 @@ tools: - name: corr_table owner: melpetera revisions: + - 2173ad5e7750 - b22c453e4cf4 tool_panel_section_label: Metabolomics - name: heatmap @@ -281,6 +306,7 @@ tools: - name: hmdb_ms_search owner: fgiacomoni revisions: + - 29195cb5d378 - 505956db90c5 - 63ba1cb240b7 tool_panel_section_label: Metabolomics @@ -314,11 +340,13 @@ tools: - name: mspurity_spectralmatching owner: computational-metabolomics revisions: + - 01cbb99bca13 - 4db043151468 tool_panel_section_label: Metabolomics - name: metfrag owner: computational-metabolomics revisions: + - f151ee133612 - fd5c0b39569a tool_panel_section_label: Metabolomics - name: metfrag_vis @@ -329,6 +357,7 @@ tools: - name: sirius_csifingerid owner: computational-metabolomics revisions: + - 8dac4cef0a22 - 9e6bf7278257 tool_panel_section_label: Metabolomics - name: nmr_annotation @@ -339,6 +368,7 @@ tools: - name: xcms_export_samplemetadata owner: lecorguille revisions: + - 4ea32e46b2d6 - f39cd33a73a6 tool_panel_section_label: Metabolomics - name: generic_filter @@ -346,11 +376,13 @@ tools: revisions: - 12cf1eed21f4 - b1fa45bd2b44 + - cfd7c4aa5c26 tool_panel_section_label: Metabolomics - name: tablemerge owner: melpetera revisions: - 902ab790fb7b + - e44c5246247a tool_panel_section_label: Metabolomics - name: checkformat owner: ethevenot @@ -362,11 +394,13 @@ tools: owner: melpetera revisions: - bdee2c2c484b + - ec75de7f1e08 tool_panel_section_label: Metabolomics - name: idchoice owner: melpetera revisions: - b7a6a88f518a + - bb19b1d15732 tool_panel_section_label: Metabolomics - name: w4mclassfilter owner: eschen42 @@ -398,10 +432,12 @@ tools: revisions: - 6153e8ada1ee - 9ec469ff191a + - ab6c14374bc0 tool_panel_section_label: Convert Formats - name: thermo_raw_file_converter owner: galaxyp revisions: + - 19e45916daf9 - 77a18a61aeed tool_panel_section_label: Convert Formats - name: msms_extractor diff --git a/rnateam.yaml b/rnateam.yaml index b874aefa..78e6ff25 100644 --- a/rnateam.yaml +++ b/rnateam.yaml @@ -76,10 +76,22 @@ tools: owner: yhoogstrate tool_panel_section_label: RNA Analysis + - name: mirdeep2 + owner: rnateam + tool_panel_section_label: 'RNA Analysis' + + - name: mirdeep2_mapper + owner: rnateam + tool_panel_section_label: 'RNA Analysis' + - name: nastiseq owner: rnateam tool_panel_section_label: RNA Analysis + - name: rnacode + owner: rnateam + tool_panel_section_label: 'RNA Analysis' + - name: pipmir owner: rnateam tool_panel_section_label: RNA Analysis diff --git a/rnateam.yaml.lock b/rnateam.yaml.lock index 7312d529..f661a610 100644 --- a/rnateam.yaml.lock +++ b/rnateam.yaml.lock @@ -34,11 +34,10 @@ tools: - name: graphprot_predict_profile owner: rnateam revisions: - - 20429f4c1b95 - 215925e588c4 + - 33b590aa07c1 - 4ad83aed5c3c - 7bbb7bf6304f - - ddcf35a868b8 tool_panel_section_label: RNA Analysis - name: rbpbench owner: rnateam @@ -76,6 +75,7 @@ tools: - name: locarna_multiple owner: rnateam revisions: + - 6e20ad2c8752 - 7554c0df9139 - 94b0468f0db8 tool_panel_section_label: RNA Analysis @@ -106,11 +106,26 @@ tools: revisions: - 0addbdbc1344 tool_panel_section_label: RNA Analysis +- name: mirdeep2 + owner: rnateam + revisions: + - 6a17e1229b9f + tool_panel_section_label: RNA Analysis +- name: mirdeep2_mapper + owner: rnateam + revisions: + - dbbe92348c7a + tool_panel_section_label: RNA Analysis - name: nastiseq owner: rnateam revisions: - 0a0bba8e1823 tool_panel_section_label: RNA Analysis +- name: rnacode + owner: rnateam + revisions: + - d49b9759e294 + tool_panel_section_label: RNA Analysis - name: pipmir owner: rnateam revisions: diff --git a/single-cell-ebi-gxa.yaml.lock b/single-cell-ebi-gxa.yaml.lock index d5c16b17..1fe97d4c 100644 --- a/single-cell-ebi-gxa.yaml.lock +++ b/single-cell-ebi-gxa.yaml.lock @@ -1069,6 +1069,7 @@ tools: revisions: - 0a8c6b61f0f4 - 12615d397df7 + - 86755160afbf - 9ff72e942410 - d698c222f354 - ddf54b12c295 @@ -1082,8 +1083,10 @@ tools: - 24013bf85a6f - 276b4111b253 - 70cb5527defb + - 71ad4a56c40c - 8250ea3a1501 - 933220bbc2ae + - 9570563fb686 - a535cf1e5da4 - b557acca0b56 - e654095ab143 @@ -1158,7 +1161,9 @@ tools: - 68a2b5445558 - 893ff9213a34 - 93f61ea19336 + - bd4b54b75888 - f321c60167d4 + - f6040492b499 tool_panel_section_id: hca_sc_label_analysis_tools - name: garnett_check_markers owner: ebi-gxa diff --git a/tools_galaxyp.yaml.lock b/tools_galaxyp.yaml.lock index 90a19024..35706fb8 100644 --- a/tools_galaxyp.yaml.lock +++ b/tools_galaxyp.yaml.lock @@ -5,6 +5,7 @@ tools: - name: fragpipe owner: galaxyp revisions: + - da9ebef968bd - ef46866326ef tool_panel_section_label: Proteomics - name: zeiss_lmd_converter @@ -224,6 +225,7 @@ tools: - 6153e8ada1ee - 9b61227976d6 - 9ec469ff191a + - ab6c14374bc0 - cc5ccfa8ee28 - dd4ba10d0c45 tool_panel_section_label: Convert Formats @@ -558,7 +560,9 @@ tools: owner: galaxyp revisions: - 064b53fd3131 + - 17c54a716a5b - 24ccdcfbabac + - 6a8cf86fd3b7 - 7bee859bbd11 - 9f136ebf73ac - b5e9cebb27e3 @@ -2166,10 +2170,8 @@ tools: revisions: - 016964c597f5 - 02796e3ddec1 - - 0fc9ae55bcfc - 147aaac03456 - b0dd2bd8e710 - - e7881a82b56d tool_panel_section_label: Proteomics - name: openms_fidoadapter owner: galaxyp @@ -2185,9 +2187,7 @@ tools: revisions: - 0fb75f784e2d - 4fdeb75928ea - - 81402a5e4173 - 87dda030bc92 - - 9a6e3bb0f358 - cf9b51c0b15e tool_panel_section_label: Proteomics - name: openms_idposteriorerrorprobability @@ -2375,10 +2375,7 @@ tools: revisions: - 10d8b43176a9 - 23af1883f977 - - 40cc19c0dbd6 - 4d2b77fd7a28 - - a2a842b00f9c - - fc36cfd19834 tool_panel_section_label: Proteomics - name: openms_databasefilter owner: galaxyp diff --git a/tools_iuc.yaml b/tools_iuc.yaml index c44365e8..c38bc12e 100644 --- a/tools_iuc.yaml +++ b/tools_iuc.yaml @@ -23,6 +23,10 @@ tools: owner: iuc tool_panel_section_label: Annotation + - name: argnorm + owner: iuc + tool_panel_section_label: Annotation + - name: bakta owner: iuc tool_panel_section_label: Annotation @@ -67,6 +71,10 @@ tools: owner: iuc tool_panel_section_label: Annotation + - name: evidencemodeler + owner: iuc + tool_panel_section_label: Annotation + - name: dgidb_annotator owner: devteam tool_panel_section_label: Annotation @@ -311,12 +319,21 @@ tools: owner: iuc tool_panel_section_label: Annotation + - name: data_manager_dada2 + owner: iuc + - name: data_manager_omamer owner: iuc + - name: data_manager_humann2_database_downloader + owner: iuc + - name: data_manager_ncbi_fcs_gx_database_downloader owner: iuc + - name: data_manager_picard_index_builder + owner: devteam + - name: optitype owner: iuc tool_panel_section_label: Annotation @@ -773,6 +790,14 @@ tools: owner: iuc tool_panel_section_label: Convert Formats + - name: ucsc_axtchain + owner: iuc + tool_panel_section_label: Convert Formats + + - name: ucsc_maftoaxt + owner: iuc + tool_panel_section_label: Convert Formats + - name: ucsc_twobittofa owner: iuc tool_panel_section_label: Convert Formats @@ -781,6 +806,18 @@ tools: owner: iuc tool_panel_section_label: Convert Formats + - name: ucsc_nettoaxt + owner: iuc + tool_panel_section_label: Convert Formats + + - name: ucsc_netfilter + owner: iuc + tool_panel_section_label: Convert Formats + + - name: ucsc_chainnet + owner: iuc + tool_panel_section_label: Convert Formats + # EMBOSS - name: emboss_5 @@ -917,6 +954,10 @@ tools: owner: lparsons tool_panel_section_label: FASTA/FASTQ + - name: fasta_clipping_histogram + owner: devteam + tool_panel_section_label: FASTA/FASTQ + - name: fasta_compute_length owner: devteam tool_panel_section_label: FASTA/FASTQ @@ -1816,6 +1857,18 @@ tools: owner: iuc tool_panel_section_label: Metagenomic Analysis + - name: name2taxid + owner: iuc + tool_panel_section_label: Metagenomic Analysis + + - name: gtdb_to_taxdump + owner: iuc + tool_panel_section_label: Metagenomic Analysis + + - name: biobox_add_taxid + owner: iuc + tool_panel_section_label: Metagenomic Analysis + - name: krakentools_kreport2krona owner: iuc tool_panel_section_label: Metagenomic Analysis @@ -2409,6 +2462,10 @@ tools: owner: iuc tool_panel_section_label: Metagenomic Analysis + - name: mg_toolkit_bulk_download + owner: iuc + tool_panel_section_label: Metagenomic Analysis + - name: mg_toolkit_original_metadata owner: iuc tool_panel_section_label: Metagenomic Analysis @@ -3471,6 +3528,14 @@ tools: owner: iuc tool_panel_section_label: Phylogenetics + - name: pacu_map + owner: iuc + tool_panel_section_label: Phylogenetics + + - name: pacu_snp + owner: iuc + tool_panel_section_label: Phylogenetics + # PICARD @@ -3782,6 +3847,34 @@ tools: owner: iuc tool_panel_section_label: RNA Analysis + - name: seurat_preprocessing + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_integrate + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_reduce_dimension + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_create + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_plot + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_data + owner: iuc + tool_panel_section_label: RNA Analysis + + - name: seurat_clustering + owner: iuc + tool_panel_section_label: RNA Analysis + - name: sleuth owner: iuc tool_panel_section_label: RNA Analysis @@ -4076,6 +4169,10 @@ tools: # SINGLE-CELL + - name: cosg + owner: iuc + tool_panel_section_label: Single-cell + - name: sceasy_convert owner: iuc tool_panel_section_label: Single-cell @@ -4196,6 +4293,14 @@ tools: owner: iuc tool_panel_section_label: Single-cell + - name: spapros_selection + owner: iuc + tool_panel_section_label: Single-cell + + - name: spapros_evaluation + owner: iuc + tool_panel_section_label: Single-cell + - name: episcanpy_build_matrix owner: iuc tool_panel_section_label: Single-cell @@ -4254,6 +4359,10 @@ tools: owner: devteam tool_panel_section_label: Statistics + - name: clustering_from_distmat + owner: iuc + tool_panel_section_label: Statistics + - name: correlation owner: devteam tool_panel_section_label: Statistics diff --git a/tools_iuc.yaml.lock b/tools_iuc.yaml.lock index cea43c00..2f29857a 100644 --- a/tools_iuc.yaml.lock +++ b/tools_iuc.yaml.lock @@ -18,6 +18,7 @@ tools: owner: iuc revisions: - 5aaffb8d8161 + - e909d3bc4687 tool_panel_section_label: Annotation - name: amrfinderplus owner: iuc @@ -45,6 +46,11 @@ tools: - f29602ae449e - fe3ca740a485 tool_panel_section_label: Annotation +- name: argnorm + owner: iuc + revisions: + - bae2bc0f1b66 + tool_panel_section_label: Annotation - name: bakta owner: iuc revisions: @@ -53,6 +59,7 @@ tools: - 865ece5ca178 - 92eee5f31117 - ba6990f72184 + - d77802fe76f7 - da5f1924bb2e - debdc1469b41 tool_panel_section_label: Annotation @@ -61,6 +68,7 @@ tools: revisions: - 0d243f458b53 - 2a5b8b9936bf + - 2babe6d5c561 - 2dd755c1c6ff - 41030a6c03b7 - 46ae58b1d792 @@ -78,6 +86,7 @@ tools: - 264c38c4f8ba - 4fdabf147b39 - 9de4eeb0023b + - c69c02c33322 tool_panel_section_label: Annotation - name: chewbbaca_allelecallevaluator owner: iuc @@ -85,6 +94,7 @@ tools: - 15025d7fbc5f - 77a84fa4a02b - 7c4f32708e80 + - b4467818950a tool_panel_section_label: Annotation - name: chewbbaca_createschema owner: iuc @@ -92,6 +102,7 @@ tools: - 220e2f7ff8bb - 4e61ec4fd5f5 - 6a8df4d75f3a + - ae1374a5ecdf tool_panel_section_label: Annotation - name: chewbbaca_downloadschema owner: iuc @@ -99,12 +110,14 @@ tools: - 18d7d8582206 - 4683f2baa5f0 - a707d4098f09 + - f502e55c34a3 tool_panel_section_label: Annotation - name: chewbbaca_extractcgmlst owner: iuc revisions: - 743125c3ac12 - 8d662423bf56 + - 9c4c2191b550 - a302f0fef852 tool_panel_section_label: Annotation - name: chewbbaca_joinprofiles @@ -112,6 +125,7 @@ tools: revisions: - 4d25ff3d07a9 - a370301694bc + - e3cba867efd4 - f16c5cfeab7d tool_panel_section_label: Annotation - name: chewbbaca_nsstats @@ -119,6 +133,7 @@ tools: revisions: - 5207cb4e31a2 - 73c54f755a31 + - 7c84b3b83def - ebbbb3265867 tool_panel_section_label: Annotation - name: chewbbaca_prepexternalschema @@ -127,6 +142,7 @@ tools: - 0b73dd40d83f - 6f7cfce9494d - 7035fc8b4ae3 + - d8c1dcd7418c tool_panel_section_label: Annotation - name: compleasm owner: iuc @@ -137,6 +153,11 @@ tools: - 8f20a5b9b282 - cfec9601b25d tool_panel_section_label: Annotation +- name: evidencemodeler + owner: iuc + revisions: + - eb9dc0a70506 + tool_panel_section_label: Annotation - name: dgidb_annotator owner: devteam revisions: @@ -263,6 +284,7 @@ tools: - 174c63ee0150 - 66310cfc17dd - 681fd806acc4 + - 69dcd75c0f5f - f124679db9df tool_panel_section_label: Annotation - name: multigsea @@ -564,6 +586,8 @@ tools: owner: iuc revisions: - 2b970db61912 + - 3f6e5c701945 + - 5f8efb080f49 - dddd7ef63469 tool_panel_section_label: Annotation - name: mirmachine @@ -630,15 +654,28 @@ tools: - 9607b69326e1 - ce13b4c42256 tool_panel_section_label: Annotation +- name: data_manager_dada2 + owner: iuc + revisions: + - 678176bff643 - name: data_manager_omamer owner: iuc revisions: - 57db282ca204 - - e1502e4f8725 + - f8d72275878e +- name: data_manager_humann2_database_downloader + owner: iuc + revisions: + - ff9cf22838d4 - name: data_manager_ncbi_fcs_gx_database_downloader owner: iuc revisions: + - 35cef758050c - 6be6e6198ac3 +- name: data_manager_picard_index_builder + owner: devteam + revisions: + - 7124d2c14e4b - name: optitype owner: iuc revisions: @@ -719,6 +756,7 @@ tools: - 78608ec02d62 - 809e42326fc2 - 91887494eb97 + - 9b2b122d0415 - a9098353ae22 - dbe2b2204555 - e02e9af2743f @@ -830,6 +868,7 @@ tools: - 841084c5fc46 - 8f1b150a2487 - a929ce596a34 + - d6d5ccc2c581 - f4fb67b97a63 - fa5259cc561b tool_panel_section_label: Assembly @@ -864,6 +903,7 @@ tools: - 6322de5e24e5 - 74878f127e47 - a32b531f66a0 + - c126b04edfd2 tool_panel_section_label: Assembly - name: disco owner: iuc @@ -883,6 +923,7 @@ tools: revisions: - 01210c4e9144 - 3169a38c2656 + - 460fad600dce - b2f674562a18 tool_panel_section_label: Assembly - name: getorganelle @@ -1160,10 +1201,12 @@ tools: - name: rnaquast owner: iuc revisions: + - 3125faf00ffd - 33c060ec0ac9 - 8e66f695d859 - 96f74538896e - e989670c7fc7 + - f73ab5187eed - f89e3c318453 tool_panel_section_label: Assembly - name: rnaspades @@ -1189,6 +1232,7 @@ tools: owner: iuc revisions: - 575b4d5bd444 + - 58a870ef434c - 9a22227bb6d0 - ab5b7f6b7198 - ba7b0f11e470 @@ -1384,6 +1428,7 @@ tools: - 9e3e80cc4ad4 - c4eac0c7e542 - d10bdad2fd17 + - e022dff952df - e9c1cdb9f9dc tool_panel_section_label: Assembly - name: verkko @@ -1400,6 +1445,7 @@ tools: - a3a92e30a727 - d87433f2a54d - fc925f53cae7 + - ff4031bfaa22 tool_panel_section_label: Assembly - name: bedtools owner: iuc @@ -1471,6 +1517,7 @@ tools: - 27673f5b5343 - 359e043a285c - 405ed9ad53ab + - 767943cd85bf - 7ecb45126cd2 - a68cb16fa1a0 - b226e0c805a5 @@ -1528,12 +1575,14 @@ tools: - 158b5b2a164a - 5051467dc96a - 60ca8d013263 + - 6ee334657360 - e13f565068d6 - e5340c09200a tool_panel_section_label: Convert Formats - name: crossmap_bed owner: iuc revisions: + - 50b7875a49d0 - 91efc13d3ec1 - cdbdce00f5f6 - e6c68525e9ee @@ -1546,6 +1595,7 @@ tools: - 09c6a9e067f9 - 42b239a32349 - 4d97434ea0fb + - 75a08e10cc76 - 88d180fb6d67 - e80720e27001 tool_panel_section_label: Convert Formats @@ -1553,6 +1603,7 @@ tools: owner: iuc revisions: - 8635b6b8a8f2 + - a50ef4d58c90 - eb66d7a04bf8 tool_panel_section_label: Convert Formats - name: crossmap_vcf @@ -1564,6 +1615,7 @@ tools: - 97979c3d179f - 9d61d74f03a4 - b21851ddcc79 + - d4965adac10c tool_panel_section_label: Convert Formats - name: crossmap_wig owner: iuc @@ -1573,6 +1625,7 @@ tools: - 5f893ed3c5ed - e72c320c17c1 - e8d84292e510 + - f7229c8445da tool_panel_section_label: Convert Formats - name: genebed_maf_to_fasta owner: iuc @@ -1610,6 +1663,7 @@ tools: owner: iuc revisions: - c24014d80001 + - faef2b1622a3 tool_panel_section_label: Convert Formats - name: interval2maf owner: iuc @@ -1631,6 +1685,7 @@ tools: owner: iuc revisions: - 0b663ca9a961 + - 18dbde5680c0 - 3d07b8a6dd8c - 7d3cd2087698 - b9ea85dfaf45 @@ -1641,6 +1696,7 @@ tools: revisions: - 65a69de1e294 - 6e868bf6c38e + - 8d6686664021 - a7387ce2a8ca tool_panel_section_label: Convert Formats - name: tooldistillator_summarize @@ -1649,11 +1705,25 @@ tools: - 05c1bcba20c9 - 6ff67d2860e1 - def7a82d23e1 + - f3233d395549 + tool_panel_section_label: Convert Formats +- name: ucsc_axtchain + owner: iuc + revisions: + - 05afdd33dac7 + - ac3bae00a350 + tool_panel_section_label: Convert Formats +- name: ucsc_maftoaxt + owner: iuc + revisions: + - 3a4256d4f079 + - a6540beef35f tool_panel_section_label: Convert Formats - name: ucsc_twobittofa owner: iuc revisions: - 356dc923f8d3 + - 3c6f9e8a4c17 - 4a81db403bd9 - 8067dfa00ed2 - d025a40bbff1 @@ -1661,8 +1731,25 @@ tools: - name: ucsc_wigtobigwig owner: iuc revisions: + - 98704d357ede - a2f83a375bf2 tool_panel_section_label: Convert Formats +- name: ucsc_nettoaxt + owner: iuc + revisions: + - 55efc5c37c16 + tool_panel_section_label: Convert Formats +- name: ucsc_netfilter + owner: iuc + revisions: + - 128ec4c44111 + - 728e3b913fbe + tool_panel_section_label: Convert Formats +- name: ucsc_chainnet + owner: iuc + revisions: + - 3a213e01bc7f + tool_panel_section_label: Convert Formats - name: emboss_5 owner: devteam revisions: @@ -1718,6 +1805,7 @@ tools: owner: iuc revisions: - 05ee0a74faef + - 0878b7fd5260 - 111bd54f6bc4 - 24d024316465 - 288db50d1fb9 @@ -1751,6 +1839,7 @@ tools: - name: tn93 owner: iuc revisions: + - 2fd21f5b16bc - 9d793e88e15f - b38f620a3628 tool_panel_section_label: Evolution @@ -1759,10 +1848,12 @@ tools: revisions: - 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name: cutesv owner: iuc revisions: + - 23d7e75d850e - c0f8fe52948e + - cb441f258c37 tool_panel_section_label: Variant Calling - name: deepvariant owner: iuc @@ -10890,6 +11395,7 @@ tools: - 27fd1c1f00a8 - 7303183cdb87 - b43df0ce6c87 + - e43f513583ee - fdbd97ff825e - ff0a8cda0c0b tool_panel_section_label: Variant Calling @@ -10961,6 +11467,7 @@ tools: - 3b4b2121842f - 4805fe3d8fda - 65432c3abf6c + - b11e8e9c23bf - dfadc322b065 - e1461b5c52a0 tool_panel_section_label: Variant Calling @@ -11044,6 +11551,7 @@ tools: revisions: - 30079fa4e2fd - 584c09b1967a + - 7ca2fba4be83 - b1ca9fce4749 - e3862632706d - fb00426402b0 @@ -11070,6 +11578,8 @@ tools: - name: sniffles owner: iuc revisions: + - 09f5c6f3088a + - 43fffeed243f - 93c4b04a0769 tool_panel_section_label: Variant Calling - name: snippy @@ -11097,6 +11607,7 @@ tools: - 479c4f2f4826 - 5b80f544c67f - 5c7b70713fb5 + - 6322be79bd8e - 74aebe30fb52 - 8f92c2b26e6d - 9473cd297a76 @@ -11156,6 +11667,7 @@ tools: - name: ucsc_fatovcf owner: iuc revisions: + - 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name: virsorter_build_database + owner: ufz + tool_panel_section_label: Data Managers \ No newline at end of file diff --git a/ufz.yaml.lock b/ufz.yaml.lock new file mode 100644 index 00000000..38123bc7 --- /dev/null +++ b/ufz.yaml.lock @@ -0,0 +1,45 @@ +install_repository_dependencies: true +install_resolver_dependencies: true +install_tool_dependencies: false +tools: +- name: checkv_build_database + owner: ufz + revisions: + - 3756ac7a625b + tool_panel_section_label: Metagenomic Analysis +- name: checkv_end_to_end + owner: ufz + revisions: + - e523d50513a4 + tool_panel_section_label: Data Managers +- name: genomad_end_to_end + owner: ufz + revisions: + - 955e33326e20 + - edb671f0661e + tool_panel_section_label: Metagenomic Analysis +- name: genomad_build_database + owner: ufz + revisions: + - c4ec3d81eeee + tool_panel_section_label: Data Managers +- name: vibrant + owner: ufz + revisions: + - fafa6b033c97 + tool_panel_section_label: Metagenomic Analysis +- name: vibrant_build_database + owner: ufz + revisions: + - 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