WP5098.md

# WikiPathways WP5098

• WikiPathways: WP5098 (classic)
• Species: Homo sapiens
• Scholia: WP5098
• WPRDF file: wp/Human/WP5098.ttl
• GPMLRDF file: wp/gpml/Human/WP5098.ttl
• SBML file: sbml/WP5098.sbml (SVG) (conversion notes)

Tests

• CASMetabolitesTests: all 2 tests OK!
• ChEBIMetabolitesTests: all 5 tests OK!
• ChemSpiderTests: all 2 tests OK!
• CovidDiseaseMapsTests
  • interactionsWithoutReferences: .x we found 1 problem(s):
    • Interactions without literature references: 27
  • missingHGNC: .. all OK!
• DataNodesTests: all 5 tests OK!
• EnsemblTests: all 4 tests OK!
• GeneTests: all 4 tests OK!
• GeneralTests: all 13 tests OK!
• HMDBMetabolitesTests: all 1 tests OK!
• HMDBSecMetabolitesTests: all 3 tests OK!
• InteractionTests: all 8 tests OK!
• KEGGMetaboliteTests: all 2 tests OK!
• LIPIDMAPSTests: all 1 tests OK!
• MetaboliteStructureTests: all 1 tests OK!
• MetabolitesTests: all 15 tests OK!
• OudatedDataSourcesTests: all 7 tests OK!
• PathwayTests: all 7 tests OK!
• ProteinsTests: all 2 tests OK!
• PubChemMetabolitesTests: all 3 tests OK!
• ReferencesTests: all 6 tests OK!
• UniProtTests: all 5 tests OK!
• WikidataTests
  • casWithoutMapping: .. all OK!
  • chebiWithoutMapping: .x we found 1 problem(s):
    • ChEBI identifiers without Wikidata mappings: 3
  • chebiWithoutMapping_Reactome: .. all OK!
  • chemspiderCIDWithoutMapping: .. all OK!
  • duplicateWikidataMappings: .. all OK!
  • hmdbWithoutMapping: .. all OK!
  • kNApSAcKWithoutMapping: .. all OK!
  • keggWithoutMapping: .. all OK!
  • lipidMapsWithoutMapping: .. all OK!
  • pubchemCIDWithoutMapping: .. all OK!
  • replaceWikipedia: .. all OK!
  • wikDataTypo: .. all OK!
  • wikidataIdentifiersWrong: .. all OK!

Summary

• Number of test classes: 22
• Number of tests: 111
• Number of assertions: 224
• Number of fails: 2

Fails

Interactions without references

Interactions without literature references: 27

• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/ec210
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/bacab
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/dfbe0
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/db4c0
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/c7e97
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/bfe07
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/afb47
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/c0013
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/e3e50
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/WP/Interaction/idd590bb87
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/cf476
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/aac72
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/aefef
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/d18f6
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/e7a1e
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/bc02c
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/WP/Interaction/idb2afa47
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/d18cc
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/c37dc
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/f8f36
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/WP/Interaction/id4b84b43
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/ddb28
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/f602c
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/c8bd7
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/ComplexBinding/de171
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/WP/Interaction/id6e8b4cd
• http://classic.wikipathways.org/instance/WP5098_r135185 -> http://rdf.wikipathways.org/Pathway/WP5098_r135185/WP/Interaction/idc921837b

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

ChEBI identifier without a match in Wikidata

ChEBI identifiers without Wikidata mappings: 3

• https://identifiers.org/chebi/CHEBI:139109 (IP3) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5098_r135185
• https://identifiers.org/chebi/CHEBI:145877 (PIP2) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5098_r135185
• https://identifiers.org/chebi/CHEBI:84974 (DAG) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP5098_r135185

More details at https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping