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Looks like states on nodes are affected by this too, but in a slightly different way. See attached, at the default zoom level. If zoomed in, the state borders eventually look normal, but at the default they are thicker.
Nodes with non-default border thickness are not rendered correctly when first loaded, and are also affected by zoom level. Try zooming this pathway:
http://dev.wikipathways.org/index.php/Pathway:WP3892
Looks like this after loading on dev site (note that labels are somewhat obstructed):
Looks like this after loading on main site:
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