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WP4018.md

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# WikiPathways WP4018

Tests

  • CASMetabolitesTests: all 2 tests OK!
  • ChEBIMetabolitesTests: all 5 tests OK!
  • ChemSpiderTests: all 2 tests OK!
  • CovidDiseaseMapsTests
  • DataNodesTests
    • dataNodesWithoutIdentifier: .x we found 1 problem(s):
    • unknownTypes_knownDatasource: .. all OK!
    • unknownTypes: .. all OK!
    • unknownTypes_Reactome: .. all OK!
    • otherDataSource: .. all OK!
  • EnsemblTests: all 5 tests OK!
  • GeneTests: all 4 tests OK!
  • GeneralTests: all 15 tests OK!
  • HMDBMetabolitesTests: all 2 tests OK!
  • HMDBSecMetabolitesTests: all 3 tests OK!
  • IEMPathwayTests: all 6 tests OK!
  • InteractionTests
    • noMetaboliteToNonMetaboliteConversions: .. all OK!
    • noNonMetaboliteToMetaboliteConversions: .. all OK!
    • noGeneProteinConversions: .. all OK!
    • nonNumericIDs: .. all OK!
    • interactionsWithLabels: .. all OK!
    • possibleTranslocations: .x we found 1 problem(s):
    • noProteinProteinConversions: .. all OK!
    • incorrectKEGGIdentifiers: .. all OK!
  • KEGGMetaboliteTests: all 2 tests OK!
  • LIPIDMAPSTests: all 1 tests OK!
  • MetaboliteStructureTests: all 1 tests OK!
  • MetabolitesTests: all 15 tests OK!
  • OudatedDataSourcesTests: all 24 tests OK!
  • PathwayTests: all 7 tests OK!
  • ProteinsTests: all 2 tests OK!
  • PubChemMetabolitesTests: all 3 tests OK!
  • ReferencesTests: all 6 tests OK!
  • UniProtTests: all 5 tests OK!
  • WikidataTests: all 15 tests OK!

Summary

  • Number of test classes: 23
  • Number of tests: 140
  • Number of assertions: 281
  • Number of fails: 3

Fails

Interactions without literature references: 8

More details at https://www.wikipathways.org/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences

The following DataNodes have no identifier: 8

More details at https://www.wikipathways.org/WikiPathwaysCurator/DataNodesTests/dataNodesWithoutIdentifier

Interactions between identical nodes: 1

More details at https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations