diff --git a/gpml/WP4290.gpml b/gpml/WP4290.gpml
index 177ec4c..d378e7a 100644
--- a/gpml/WP4290.gpml
+++ b/gpml/WP4290.gpml
@@ -9,7 +9,7 @@
-
+
diff --git a/gpml/WP4705.gpml b/gpml/WP4705.gpml
index dccb1f6..dc893e3 100644
--- a/gpml/WP4705.gpml
+++ b/gpml/WP4705.gpml
@@ -3,642 +3,642 @@
Cytosolic DNA and RNA can lead to innate immune sensing via three paths. DNA is sensed by cGAS, which activates STING.
RNA is sensed by MDA5 and RIG-I, which activates MAVS. An activation of STING or MAVS lead to phosphorylation of IFR3, which triggers innate immune responses.
-This pathway was inspired by Chapter 14 of the 5th edition of the book of Blau (in press).
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+This pathway was inspired by Chapter 14 of the 5th edition of the book of Blau.
+
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The presence of ribonucleotides in genomic DNA enhances photodimerization of adjacent pyrimidines, which are repaired by nucleotide excision repair
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a42
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cGAS which signals via STING (encoded by TMEM173)
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Catalytic subunit
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Cytosolic deoxyribonuclease anchored in the outer nuclear membrane. A lack of TREX1 causes DNA accumulation, both within the nucleus and the cytosol.
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Catalyzes the hydrolytic deamination of adenosine to inosine in double-stranded RNA (dsRNA) referred to as A-to-I RNA editing
cb7
a96
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DNA sensor
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mitochondrial antiviral signaling (MAVS)
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Single-stranded complementary DNA synthesized from an RNA template by the action of RNA-dependent DNA polymerase.
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Cytosolic RNA sensor
Activating mutations in RIG-I and MDA5 increase receptor affinity resulting in constitutive type I IFN signaling.
-
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cytosolic RNA sensor
Activating mutations in RIG-I and MDA5 increase receptor affinity resulting in constitutive type I IFN signaling.
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single-stranded DNA
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single-stranded DNA
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Noncatalytic subunit
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Noncatalytic subunit
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single-stranded DNA
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single-stranded DNA
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SAMHD1 has also ribonuclease activity, suggesting that a loss of SAMHD1 may lead to RNA accumulation.
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interferon-responsive genes
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Ribonucleotide
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RNase T2 degrades ribosomal RNA in lysosomes. A lack of RNase T2 causes RNA accumulation which may activate RNA sensors.
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Upon binding to dsRNA, OAS1 synthesizes 2′–5′-linked oligoadenylates using ATP as substrate, which in turn activate RNase L.
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Activation of RNase L leads to RNA degradation
-
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The heterotrimeric RNase H2 maintains genome integrity by removing ribonucleotides misincorporated during DNA replication
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The presence of ribonucleotides in genomic DNA enhances photodimerization of adjacent pyrimidines
-
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+
Within the cytosol, ssDNA metabolites with stem loops or dsDNA are sensed by the DNA sensor cGAS
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Binds ssDNA and degrades ssDNA derived from DNA repair
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"A photon causes two consecutive bases (Thymine or Cytosine) on one strand to bind together, destroying the normal base-pairing double-strand structure in that area." Source: [https://en.wikipedia.org/wiki/Pyrimidine_dimer]
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Transcription
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SAMHD1 degrades deoxynucleoside triphosphates (dNTP)
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induce type I IFN production
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activates expression of the IFNB gene and numerous interferon-responsive genes (ISG).
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Phosphorylation of the transcription factor interferon regulatory factor 3 (IRF3)
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ADAR modifies dsRNA through deamination of adenosine to inosine
-
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short RNA fragments that act as ligand for RIG-I
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Both RNA sensors, MDA5 and RIG-I signal via mitochondrial antiviral signaling (MAVS) to activate type I IFN
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Reverse transcribed
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Binds ssDNA and degrades cDNA from reverse transcription of endogenous retroelements
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Within the cytosol, ssDNA metabolites with stem loops or dsDNA are sensed by the DNA sensor cGAS
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Upon binding to dsRNA, OAS1 synthesizes 2′–5′-linked oligoadenylates using ATP as substrate, which in turn activate RNase L
-
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Activation of RNase L leads to formation of short RNA fragments that act as ligand for RIG-I
-
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Both RNA sensors, MDA5 and RIG-I signal via mitochondrial antiviral signaling (MAVS) to activate type I IFN
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@@ -664,7 +664,7 @@
de4
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@@ -711,7 +711,7 @@
de4
-
+
diff --git a/gpml/WP5506.gpml b/gpml/WP5506.gpml
index e90c36e..559186f 100644
--- a/gpml/WP5506.gpml
+++ b/gpml/WP5506.gpml
@@ -3,7 +3,7 @@
Disorders of Niacin and NAD Metabolism
-
+
@@ -59,7 +59,7 @@
nicotinate mononucleotide
-
+
@@ -72,39 +72,18 @@
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@@ -119,6 +98,13 @@
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@@ -126,6 +112,13 @@
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@@ -148,6 +141,13 @@
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@@ -155,6 +155,13 @@
+
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@@ -315,6 +322,22 @@
Siu VM
Dunwoodie SL
+
+ 35637064
+ PubMed
+ NAXE deficiency: A neurometabolic disorder of NAD(P)HX repair amenable for metabolic correction.
+ Mol Genet Metab
+ 2022
+ Manor J
+ Calame D
+ Gijavanekar C
+ Fisher K
+ Hunter J
+ Mizerik E
+ Bacino C
+ Scaglia F
+ Elsea SH
+
disease pathway
PW:0000013
@@ -362,21 +385,5 @@
Ellard S
Hakonarson H
-
- 35637064
- PubMed
- NAXE deficiency: A neurometabolic disorder of NAD(P)HX repair amenable for metabolic correction.
- Mol Genet Metab
- 2022
- Manor J
- Calame D
- Gijavanekar C
- Fisher K
- Hunter J
- Mizerik E
- Bacino C
- Scaglia F
- Elsea SH
-
\ No newline at end of file
diff --git a/reports/WP4290.json b/reports/WP4290.json
index 8e8ad3d..6bd18db 100644
--- a/reports/WP4290.json
+++ b/reports/WP4290.json
@@ -1,6 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
- "message": "5 issues",
+ "message": "4 issues",
"color": "orange"
}
diff --git a/reports/WP4290.md b/reports/WP4290.md
index 50b50c1..35b9f09 100644
--- a/reports/WP4290.md
+++ b/reports/WP4290.md
@@ -56,23 +56,7 @@
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
* UniProtTests: all 5 tests OK!
-* WikidataTests
- * keggWithoutMapping: .. all OK!
- * pubchemCIDWithoutMapping: .. all OK!
- * hmdbWithoutMapping: .. all OK!
- * casWithoutMapping: .. all OK!
- * wikDataTypo: .. all OK!
- * duplicateWikidataMappings: .. all OK!
- * wikidataIdentifiersWrong: .. all OK!
- * chemspiderCIDWithoutMapping: .. all OK!
- * lipidMapsWithoutMapping: .. all OK!
- * kNApSAcKWithoutMapping: .. all OK!
- * replaceWikipedia: .. all OK!
- * chebiWithoutMapping_Reactome: .. all OK!
- * chebiWithoutMapping: .x we found 1 problem(s):
- * [ChEBI identifiers without Wikidata mappings: 1](#a8d554cd)
- * hmdbWithoutMapping: .. all OK!
- * retiredIdentifiers: .. all OK!
+* WikidataTests: all 15 tests OK!
## Summary
@@ -80,7 +64,7 @@
* Number of test classes: 23
* Number of tests: 121
* Number of assertions: 244
-* Number of fails: 5
+* Number of fails: 4
## Fails
@@ -90,75 +74,75 @@
Interactions without literature references: 69
```
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/a3a20
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idd3a00f33
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id89f523ac
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id3f69820b
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/ea3aa
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id98487b94
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/a4b8e
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idef9fda19
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id8b1dc082
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id5b35b607
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/b489b
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id35c246c6
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id73252605
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/da767
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id8050d34f
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id53691a47
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id4397b644
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id5cef3ad2
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/iddf00f9c4
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/de029
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idbe32559c
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id2a1cc8b5
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id1e821c4b
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f3673
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id94f81660
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f7726_2
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/a1b2e
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idedcb12b8
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/d63cc
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id5c76343c
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id64a5ad62
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id3741b32a
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/e7453
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id9c3079a8
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/ida23e2577
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idb213e098
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id10285ceb
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/cf66e
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idaa3765c5
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/ec8eb
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/d62a0
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id848eb35
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id6693a213
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f344e
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id298fdba
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/c27cf_2
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id31578d96
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/d8b05
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f7726_1
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/e964f
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/a1be5
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/iddc786064
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f514d_2
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idafe33e6
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/e735c
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id6ff5a5f8
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/f03fb
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id6c9eb540
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id850b408f
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id82ad4764
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idd4026148
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id4b897550
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id46480d5d
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id574f3953
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idc5af421c
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id52cea2d3
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id1235d5f9
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idd1dc58a3
-http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idab9c107
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idb213e098
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/a1be5
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/ida23e2577
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id64a5ad62
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id3741b32a
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/c27cf_2
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id46480d5d
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id5b35b607
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id848eb35
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/a1b2e
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/e7453
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/da767
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idd1dc58a3
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id4b897550
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id298fdba
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id850b408f
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id8b1dc082
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/ec8eb
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id89f523ac
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idedcb12b8
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id5cef3ad2
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/a4b8e
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/ea3aa
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id6c9eb540
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f7726_2
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idc5af421c
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/d8b05
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id6693a213
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idab9c107
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id94f81660
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id35c246c6
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f514d_2
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/b489b
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id9c3079a8
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/iddc786064
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id1e821c4b
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idd3a00f33
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id53691a47
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/e735c
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id6ff5a5f8
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/cf66e
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idbe32559c
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idd4026148
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id98487b94
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/e964f
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/de029
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/d62a0
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/iddf00f9c4
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f7726_1
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id5c76343c
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f03fb
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/a3a20
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f344e
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idaa3765c5
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id8050d34f
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id10285ceb
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/d63cc
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id2a1cc8b5
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idef9fda19
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id82ad4764
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id52cea2d3
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/f3673
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idafe33e6
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id31578d96
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id1235d5f9
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id4397b644
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id574f3953
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id3f69820b
+http://classic.wikipathways.org/instance/WP4290_r136156 -> http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id73252605
```
@@ -167,7 +151,7 @@ http://classic.wikipathways.org/instance/WP4290_r118611 -> http://rdf.wikipathwa
Interactions found that involve Labels: 1
```
-http://classic.wikipathways.org/instance/WP4290_r118611 "pH balance
+http://classic.wikipathways.org/instance/WP4290_r136156 "pH balance
Nitrogen source" with graphId f0da4
```
@@ -177,10 +161,10 @@ Nitrogen source" with graphId f0da4
Interactions between identical nodes: 2
```
-http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/idd3a00f33 "Lactate" (https://identifiers.org/hmdb/HMDB0000190) and
-Lactate" (https://identifiers.org/hmdb/HMDB0000190)
-http://classic.wikipathways.org/instance/WP4290_r118611 http://rdf.wikipathways.org/Pathway/WP4290_r118611/WP/Interaction/id35c246c6 "glutamine" (https://identifiers.org/chebi/CHEBI:28300) and
+http://classic.wikipathways.org/instance/WP4290_r136156 http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/id35c246c6 "glutamine" (https://identifiers.org/chebi/CHEBI:28300) and
glutamine" (https://identifiers.org/chebi/CHEBI:28300)
+http://classic.wikipathways.org/instance/WP4290_r136156 http://rdf.wikipathways.org/Pathway/WP4290_r136156/WP/Interaction/idd3a00f33 "Lactate" (https://identifiers.org/hmdb/HMDB0000190) and
+Lactate" (https://identifiers.org/hmdb/HMDB0000190)
```
More details at [https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations](https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations)
@@ -191,20 +175,9 @@ More details at [https://www.wikipathways.org/WikiPathwaysCurator/InteractionTes
Non-zero count of metabolites with more than one InChIKey: 4
```
-http://classic.wikipathways.org/instance/WP4290_r118611 (example) has: NH3 CHEBI:16134 with InChIKeys: QGZKDVFQNNGYKY-UHFFFAOYSA-N, RUVUHIUYGJBLGI-AXAJWWPKSA-N
-http://classic.wikipathways.org/instance/WP4290_r118611 (example) has: Asparagine CHEBI:17196 with InChIKeys: DCXYFEDJOCDNAF-REOHCLBHSA-N, UYPYRKYUKCHHIB-UHFFFAOYSA-N
-http://classic.wikipathways.org/instance/WP4290_r118611 (example) has: IMP CHEBI:17202 with InChIKeys: GRSZFWQUAKGDAV-UHFFFAOYSA-N, GRSZFWQUAKGDAV-KQYNXXCUSA-N
-http://classic.wikipathways.org/instance/WP4290_r118611 (example) has: glutamine CHEBI:28300 with InChIKeys: ZDXPYRJPNDTMRX-UHFFFAOYSA-N, RSOHUXCZIQMEMQ-JLHYYAGUSA-N
-```
-
-
-
-## ChEBI identifier without a match in Wikidata
-
-ChEBI identifiers without Wikidata mappings: 1
-```
-https://identifiers.org/chebi/CHEBI:45522 (Phosphoserine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4290_r118611 ;
+http://classic.wikipathways.org/instance/WP4290_r136156 (example) has: NH3 CHEBI:16134 with InChIKeys: QGZKDVFQNNGYKY-UHFFFAOYSA-N, RUVUHIUYGJBLGI-AXAJWWPKSA-N
+http://classic.wikipathways.org/instance/WP4290_r136156 (example) has: Asparagine CHEBI:17196 with InChIKeys: DCXYFEDJOCDNAF-REOHCLBHSA-N, UYPYRKYUKCHHIB-UHFFFAOYSA-N
+http://classic.wikipathways.org/instance/WP4290_r136156 (example) has: IMP CHEBI:17202 with InChIKeys: GRSZFWQUAKGDAV-UHFFFAOYSA-N, GRSZFWQUAKGDAV-KQYNXXCUSA-N
+http://classic.wikipathways.org/instance/WP4290_r136156 (example) has: glutamine CHEBI:28300 with InChIKeys: ZDXPYRJPNDTMRX-UHFFFAOYSA-N, RSOHUXCZIQMEMQ-JLHYYAGUSA-N
```
-More details at [https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping](https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping)
-
diff --git a/reports/WP4705.md b/reports/WP4705.md
index 74c7fd6..d1fac04 100644
--- a/reports/WP4705.md
+++ b/reports/WP4705.md
@@ -73,42 +73,42 @@
Interactions without literature references: 36
```
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idc12ee2d5
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idaffa35d6
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id71c25215
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idbbf5b0dd
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idd096d760
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id7e04d7bc
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id658e2ed4
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idab62fb7b
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id61811f11
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idddca2baf
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/b7745
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id31c220f4
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idca056563
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ideda7de2a
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/df6a1
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/d980b
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id3b4d59a9
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/fdacc
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id4a94bff
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idd45ff29e
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ida930645
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idc52f8c77
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id28463d3b
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/ComplexBinding/d60b6
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ba725
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ed0de
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id3d85da4c
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idfd223107
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/a4121
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ida8bbcb3c
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/id997e3eb9
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/f413f
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idbd3bcc46
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idc9dfed8a
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/ide910b442
-http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathways.org/Pathway/WP4705_r128779/WP/Interaction/idf290c8fa
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ed0de
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/f413f
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id71c25215
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idf290c8fa
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id31c220f4
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idab62fb7b
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/ComplexBinding/d60b6
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idfd223107
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ide910b442
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id61811f11
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idd45ff29e
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ida930645
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id4a94bff
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/b7745
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/fdacc
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc52f8c77
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idca056563
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id658e2ed4
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc12ee2d5
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id28463d3b
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idbbf5b0dd
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ida8bbcb3c
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id7e04d7bc
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id3d85da4c
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/a4121
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/df6a1
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id997e3eb9
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ideda7de2a
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idd096d760
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idc9dfed8a
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/id3b4d59a9
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/d980b
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idddca2baf
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/ba725
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idbd3bcc46
+http://classic.wikipathways.org/instance/WP4705_r136158 -> http://rdf.wikipathways.org/Pathway/WP4705_r136158/WP/Interaction/idaffa35d6
```
@@ -117,8 +117,8 @@ http://classic.wikipathways.org/instance/WP4705_r128779 -> http://rdf.wikipathwa
Interactions found that involve Labels: 2
```
-http://classic.wikipathways.org/instance/WP4705_r128779 "UV light" with graphId cd31a
-http://classic.wikipathways.org/instance/WP4705_r128779 "RNA
+http://classic.wikipathways.org/instance/WP4705_r136158 "UV light" with graphId cd31a
+http://classic.wikipathways.org/instance/WP4705_r136158 "RNA
degradation" with graphId ede18
```
@@ -128,8 +128,8 @@ degradation" with graphId ede18
ChEBI identifiers without Wikidata mappings: 2
```
-https://identifiers.org/chebi/CHEBI:74411 (Adenosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r128779 ;
-https://identifiers.org/chebi/CHEBI:82852 (Inosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r128779 ;
+https://identifiers.org/chebi/CHEBI:74411 (Adenosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r136158 ;
+https://identifiers.org/chebi/CHEBI:82852 (Inosine) does not have a Wikidata mapping in http://classic.wikipathways.org/instance/WP4705_r136158 ;
```
More details at [https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping](https://www.wikipathways.org/WikiPathwaysCurator/WikidataTests/chebiWithoutMapping)
diff --git a/reports/WP5504.json b/reports/WP5504.json
index 8e8ad3d..1624939 100644
--- a/reports/WP5504.json
+++ b/reports/WP5504.json
@@ -1,6 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
- "message": "5 issues",
+ "message": "3 issues",
"color": "orange"
}
diff --git a/reports/WP5504.md b/reports/WP5504.md
index 3838088..6dcdbbf 100644
--- a/reports/WP5504.md
+++ b/reports/WP5504.md
@@ -33,8 +33,7 @@
* nonNumericIDs: .. all OK!
* interactionsWithLabels: .x we found 1 problem(s):
* [Interactions found that involve Labels: 2](#630d2679)
- * possibleTranslocations: .x we found 1 problem(s):
- * [Interactions between identical nodes: 2](#1c118207)
+ * possibleTranslocations: .. all OK!
* noProteinProteinConversions: .. all OK!
* incorrectKEGGIdentifiers: .. all OK!
* KEGGMetaboliteTests: all 2 tests OK!
@@ -42,15 +41,7 @@
* MetaboliteStructureTests: all 1 tests OK!
* MetabolitesTests: all 15 tests OK!
* OudatedDataSourcesTests: all 7 tests OK!
-* PathwayTests
- * deletedPathways: .. all OK!
- * linksToDeletedPathways: .. all OK!
- * linksToDeletedPathways_All: .. all OK!
- * speciesMismatch: .. all OK!
- * testRoundedRectangle: .x we found 1 problem(s):
- * [Pathways DataNodes with WikiPathways ID that can be converted to have a RoundedRectangle ShapeType so that they become clickable: 1](#16e17db)
- * youMustCite: .. all OK!
- * oldLicenses: .. all OK!
+* PathwayTests: all 7 tests OK!
* ProteinsTests: all 2 tests OK!
* PubChemMetabolitesTests: all 3 tests OK!
* ReferencesTests: all 6 tests OK!
@@ -63,7 +54,7 @@
* Number of test classes: 23
* Number of tests: 121
* Number of assertions: 244
-* Number of fails: 5
+* Number of fails: 3
## Fails
@@ -73,22 +64,22 @@
Interactions without literature references: 16
```
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/e5bc2
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/eca30
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/b7377
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/dca9b
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/a10a8
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/d6dae
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/ComplexBinding/c3635
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/af333
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/ffbfa
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/ce009
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/a47fe
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/c22d1
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/bc7ea
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/dbf59
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/dc157
-http://classic.wikipathways.org/instance/WP5504_r136141 -> http://rdf.wikipathways.org/Pathway/WP5504_r136141/ComplexBinding/da100
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/bc7ea
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a10a8
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dc157
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/c22d1
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/a47fe
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/da100
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dca9b
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/d6dae
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ce009
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/af333
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/dbf59
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/eca30
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/ComplexBinding/c3635
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/b7377
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/ffbfa
+http://classic.wikipathways.org/instance/WP5504_r136157 -> http://rdf.wikipathways.org/Pathway/WP5504_r136157/WP/Interaction/e5bc2
```
@@ -106,33 +97,10 @@ https://identifiers.org/wikipathways/WP5504 has an metabolite not linked to an i
Interactions found that involve Labels: 2
```
-http://classic.wikipathways.org/instance/WP5504_r136141 "Mitochondrial
+http://classic.wikipathways.org/instance/WP5504_r136157 "Mitochondrial
Membrane
Potential" with graphId fbd15
-http://classic.wikipathways.org/instance/WP5504_r136141 "Mitophagy
+http://classic.wikipathways.org/instance/WP5504_r136157 "Mitophagy
regulation" with graphId dae41
```
-
-
-## Possible MIM translocation
-
-Interactions between identical nodes: 2
-```
-http://classic.wikipathways.org/instance/WP5504_r136141 http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/e0d33 "Proline" (https://identifiers.org/chebi/CHEBI:26271) and
-Proline" (https://identifiers.org/chebi/CHEBI:26271)
-http://classic.wikipathways.org/instance/WP5504_r136141 http://rdf.wikipathways.org/Pathway/WP5504_r136141/WP/Interaction/dbb70 "pyrroline-5- carboxylate" (https://identifiers.org/chebi/CHEBI:15893) and
-pyrroline-5- carboxylate" (https://identifiers.org/chebi/CHEBI:15893)
-```
-
-More details at [https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations](https://www.wikipathways.org/WikiPathwaysCurator/InteractionTests/possibleTranslocations)
-
-
-
-## PathwayTests.testRoundedRectangle
-
-Pathways DataNodes with WikiPathways ID that can be converted to have a RoundedRectangle ShapeType so that they become clickable: 1
-```
-http://classic.wikipathways.org/instance/WP5504_r136141 -> a14a8, WP2717
- ```
-
diff --git a/reports/WP5506.json b/reports/WP5506.json
index 4740086..adb9b9b 100644
--- a/reports/WP5506.json
+++ b/reports/WP5506.json
@@ -1,6 +1,6 @@
{
"schemaVersion": 1,
"label": "curation",
- "message": "7 issues",
+ "message": "6 issues",
"color": "orange"
}
diff --git a/reports/WP5506.md b/reports/WP5506.md
index fb5b222..3a1828f 100644
--- a/reports/WP5506.md
+++ b/reports/WP5506.md
@@ -10,7 +10,7 @@
* ChemSpiderTests: all 2 tests OK!
* CovidDiseaseMapsTests
* interactionsWithoutReferences: .x we found 1 problem(s):
- * [Interactions without literature references: 11](#9701cce2)
+ * [Interactions without literature references: 12](#9701cce3)
* missingHGNC: .. all OK!
* DataNodesTests: all 5 tests OK!
* EnsemblTests: all 5 tests OK!
@@ -18,14 +18,7 @@
* GeneralTests: all 13 tests OK!
* HMDBMetabolitesTests: all 2 tests OK!
* HMDBSecMetabolitesTests: all 3 tests OK!
-* IEMPathwayTests
- * allMetabolitesInteract: .x we found 1 problem(s):
- * [Found metabolites without interaction: 1](#2bc2e7ec)
- * metabolicConversions: .. all OK!
- * catalystsWithCommonDataSource: .. all OK!
- * metabolicConversionIdentifiersCommon: .. all OK!
- * diseasesHaveIdentifiers: .. all OK!
- * omimIdentifiers: .. all OK!
+* IEMPathwayTests: all 6 tests OK!
* InteractionTests
* noMetaboliteToNonMetaboliteConversions: .. all OK!
* noNonMetaboliteToMetaboliteConversions: .. all OK!
@@ -94,36 +87,28 @@
* Number of test classes: 23
* Number of tests: 121
* Number of assertions: 244
-* Number of fails: 7
+* Number of fails: 6
## Fails
-
+
## CovidDiseaseMapsTests.interactionsWithoutReferences
-Interactions without literature references: 11
+Interactions without literature references: 12
```
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/afd58
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/ebf19
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idf02016cf
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idfe78d24b
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idcb736366
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idc3f9ca71
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/fca0e
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idfd836518
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/ide4aa25cc
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/e4a6c
-http://classic.wikipathways.org/instance/WP5506_r136143 -> http://rdf.wikipathways.org/Pathway/WP5506_r136143/WP/Interaction/idbf91fee3
-```
-
-
-
-## IEMPathwayTests.allMetabolitesInteract
-
-Found metabolites without interaction: 1
-```
-https://identifiers.org/wikipathways/WP5506 has an metabolite not linked to an interaction: NMN(+)
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idfe78d24b
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idfd836518
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idbf91fee3
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idcb736366
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/fca0e
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idb83ec8f6
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/ide4aa25cc
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/e4a6c
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/ebf19
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idc3f9ca71
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/idf02016cf
+http://classic.wikipathways.org/instance/WP5506_r136155 -> http://rdf.wikipathways.org/Pathway/WP5506_r136155/WP/Interaction/afd58
```
@@ -133,8 +118,8 @@ https://identifiers.org/wikipathways/WP5506 has an metabolite not linked to an i
Incorrect Rhea IDs: 2
```
Found Rhea IDs that are not numbers (they should not include a 'Rhea:' prefix):
-http://classic.wikipathways.org/instance/WP5506_r136143 RHEA:38611
-http://classic.wikipathways.org/instance/WP5506_r136143 RHEA:38615
+http://classic.wikipathways.org/instance/WP5506_r136155 RHEA:38611
+http://classic.wikipathways.org/instance/WP5506_r136155 RHEA:38615
```
@@ -143,13 +128,13 @@ http://classic.wikipathways.org/instance/WP5506_r136143 RHEA:38615
Interactions found that involve Labels: 3
```
-http://classic.wikipathways.org/instance/WP5506_r136143 "NAD(P)HX
-epimerase
-deficiency" with graphId cf0ea
-http://classic.wikipathways.org/instance/WP5506_r136143 "NAD
+http://classic.wikipathways.org/instance/WP5506_r136155 "NAD
synthetase 1
deficiency" with graphId d7a82
-http://classic.wikipathways.org/instance/WP5506_r136143 "NAD(P)HX
+http://classic.wikipathways.org/instance/WP5506_r136155 "NAD(P)HX
+epimerase
+deficiency" with graphId cf0ea
+http://classic.wikipathways.org/instance/WP5506_r136155 "NAD(P)HX
dehydratase
deficiency" with graphId f7ea7
```
@@ -160,7 +145,7 @@ deficiency" with graphId f7ea7
Non-zero count of metabolites with more than one InChIKey: 1
```
-http://classic.wikipathways.org/instance/WP5506_r136143 (example) has: ADP-D-ribose CHEBI:16960 with InChIKeys: SRNWOUGRCWSEMX-UHFFFAOYSA-N, SRNWOUGRCWSEMX-TYASJMOZSA-N
+http://classic.wikipathways.org/instance/WP5506_r136155 (example) has: ADP-D-ribose CHEBI:16960 with InChIKeys: SRNWOUGRCWSEMX-UHFFFAOYSA-N, SRNWOUGRCWSEMX-TYASJMOZSA-N
```
@@ -169,7 +154,7 @@ http://classic.wikipathways.org/instance/WP5506_r136143 (example) has: ADP-D-rib
Found 1 pathways with zero (PubMed) references
-* [http://classic.wikipathways.org/instance/WP5506_r136143](http://classic.wikipathways.org/instance/WP5506_r136143) 'Disorders of NAD metabolism' in Homo sapiens has zero references;
+* [http://classic.wikipathways.org/instance/WP5506_r136155](http://classic.wikipathways.org/instance/WP5506_r136155) 'Disorders of NAD metabolism' in Homo sapiens has zero references;
More details at [https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference](https://www.wikipathways.org/WikiPathwaysCurator/ReferencesTests/atLeastOneReference)
diff --git a/wp/Human/WP5504.ttl b/wp/Human/WP5504.ttl
index 21717f6..4c74170 100644
--- a/wp/Human/WP5504.ttl
+++ b/wp/Human/WP5504.ttl
@@ -23,20 +23,20 @@
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000156709" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , , , , , , , , , , , , , , , , ;
wp:bdbWikidata ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
rdf:type wp:PublicationReference ;
dc:source "PubMed" ;
dcterms:identifier "39075050" ;
- dcterms:isPartOf , , , , , , , , , , , , , , , , ;
+ dcterms:isPartOf , , , , , , , , , , , , , , , , ;
foaf:page .
@@ -45,13 +45,13 @@
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000158828" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot ;
wp:bdbWikidata ;
- wp:isAbout , , ;
+ wp:isAbout , , ;
foaf:page .
@@ -60,71 +60,71 @@
dc:identifier ;
dc:source "Uniprot-TrEMBL" ;
dcterms:identifier "Q9BUK6" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , , ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
-
- rdf:type wp:Pathway , skos:Collection ;
- dc:identifier ;
- dc:source "WikiPathways" ;
- dc:title "Disorders of Mitochondrial Homeostatis, Dynamics, Protein Import, and Quality Control"@en ;
- dcterms:description "This pathway lists several genes involved in mechanisms involved in disorders of mitochondrial homeostatis, dynamics, protein import, and quality control. This pathway was inspired by Figure 46.1 of Edition 5, Chapter 46 of the book of Blau (ISBN 9783030677268). Genes linked to a disease in this book chapter are depicted in red." ;
- dcterms:identifier "WP5504" ;
- cito:cites , , , ;
- wp:isAbout ;
- wp:ontologyTag obo:PW_0001669 , obo:PW_0000013 ;
- wp:organism obo:NCBITaxon_9606 ;
- wp:organismName "Homo sapiens" ;
- wp:pathwayOntologyTag obo:PW_0000013 , obo:PW_0001669 ;
- foaf:img , ;
- foaf:page .
-
rdf:type wp:DataNode , wp:GeneProduct ;
rdfs:label "TXN2" ;
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000100348" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
+
+ rdf:type wp:DirectedInteraction , wp:Interaction ;
+ dcterms:isPartOf ;
+ wp:isAbout ;
+ wp:participants , ;
+ wp:source ;
+ wp:target .
+
rdf:type wp:DataNode , wp:GeneProduct ;
rdfs:label "SFXN4" ;
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000183605" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , ;
wp:bdbWikidata ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
+
+ rdf:type wp:Conversion , wp:DirectedInteraction , wp:Interaction ;
+ dcterms:isPartOf ;
+ wp:isAbout ;
+ wp:participants , ;
+ wp:source ;
+ wp:target .
+
rdf:type wp:Protein , wp:DataNode ;
rdfs:label "TMEM126A" ;
dc:identifier ;
dc:source "Uniprot-TrEMBL" ;
dcterms:identifier "Q9H061" ;
- dcterms:isPartOf , ;
+ dcterms:isPartOf , ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
@@ -133,55 +133,69 @@
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000144381" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , , , , , , , , , , , , , , ;
wp:bdbWikidata ;
- wp:isAbout , ;
+ wp:isAbout , ;
foaf:page .
+
+ rdf:type wp:DirectedInteraction , wp:Catalysis , wp:Interaction ;
+ dcterms:isPartOf ;
+ dcterms:references ;
+ wp:isAbout ;
+ wp:participants , ;
+ wp:source ;
+ wp:target .
+
rdf:type wp:DataNode , wp:Protein ;
rdfs:label "MARCHF5" ;
dc:identifier ;
dc:source "Uniprot-TrEMBL" ;
dcterms:identifier "Q9NX47" ;
- dcterms:isPartOf , ;
+ dcterms:isPartOf , ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot ;
- wp:isAbout ;
+ wp:isAbout ;
foaf:page .
+
+ rdf:type wp:DirectedInteraction , wp:Interaction ;
+ dcterms:isPartOf ;
+ wp:isAbout ;
+ wp:participants , ;
+ wp:source ;
+ wp:target .
+
rdf:type wp:GeneProduct , wp:DataNode ;
rdfs:label "HTRA2" ;
dc:identifier ;
dc:source "Ensembl" ;
dcterms:identifier "ENSG00000115317" ;
- dcterms:isPartOf ;
+ dcterms:isPartOf ;
wp:bdbEnsembl ;
wp:bdbEntrezGene ;
wp:bdbHgncSymbol ;
wp:bdbUniprot , , , , ;
wp:bdbWikidata ;
- wp:isAbout ,