Merge branch 'development' into update_ms_initial_models

.github/workflows/c-linter.yml

@@ -6,7 +6,7 @@ jobs:
   cpp-linter:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -56,7 +56,7 @@ jobs:
           -run-linter
 
       - name: Archive clang tidy report
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: clang-tidy-report
           path: clang-tidy-report.txt

.github/workflows/check-ifdefs.yml

@@ -19,18 +19,9 @@ jobs:
           fetch-depth: 0
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-
-      - name: Cache pip
-        uses: actions/cache@v3
-        with:
-          # this path is specific to Ubuntu
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          python-version: '3.11'
 
       - name: Run check-ifdefs
         run: |

.github/workflows/check-makefiles.yml

@@ -19,18 +19,9 @@ jobs:
           fetch-depth: 0
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-
-      - name: Cache pip
-        uses: actions/cache@v3
-        with:
-          # this path is specific to Ubuntu
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          python-version: '3.11'
 
       - name: Run check-ifdefs
         run: |

.github/workflows/check-params.yml

@@ -14,7 +14,7 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -28,19 +28,10 @@ jobs:
           cd ../..
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: '3.11'
 
-      - name: Cache pip
-        uses: actions/cache@v3
-        with:
-          # this path is specific to Ubuntu
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
-
       - name: Run check-params
         run: |
           PYTHONPATH=external/Microphysics/util/build_scripts python .github/workflows/check_params.py .

.github/workflows/codespell.yml

@@ -14,23 +14,15 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
       - name: Setup Python
         uses: actions/setup-python@v4
         with:
           python-version: '3.10'
-
-      - name: Cache pip
-        uses: actions/cache@v3
-        with:
-          # this path is specific to Ubuntu
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          cache: "pip"
 
       - name: Install dependencies
         run: pip install -r ./requirements.txt

.github/workflows/compiler-warnings.yml

@@ -5,7 +5,7 @@ jobs:
   compiler_warnings:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/create_release.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Get the version
         id: get_version
@@ -33,4 +33,4 @@ jobs:
           release_name: Release ${{ github.ref }}
           body: ${{ env.RELEASE_TXT }}
           draft: false
-          prerelease: false
+          prerelease: false

.github/workflows/detonation-sdc-compare.yml

@@ -5,7 +5,7 @@ jobs:
   detonation-sdc:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/docs-test.yml

@@ -14,26 +14,18 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
       - name: Install pandoc and doxygen
         run: |
           sudo apt install pandoc doxygen
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
-
-      - name: Cache pip
-        uses: actions/cache@v3
-        with:
-          # this path is specific to Ubuntu
-          path: ~/.cache/pip
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
+          python-version: '3.11'
+          cache: "pip"
 
       - name: Install dependencies
         run: pip install -r ./requirements.txt

.github/workflows/exact_riemann.yml

@@ -5,7 +5,7 @@ jobs:
   exact_riemann:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/flame_wave-compare.yml

@@ -5,7 +5,7 @@ jobs:
   flame_wave-2d:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/gh-pages.yml

@@ -10,35 +10,24 @@ jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Install pandoc and doxygen
         run: |
           sudo apt update
           sudo apt install pandoc doxygen
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
-          python-version: '3.10'
+          python-version: '3.11'
+          cache: "pip"
 
       - name: Upgrade pip
         run: |
           # install pip=>20.1 to use "pip cache dir"
           python3 -m pip install --upgrade pip
 
-      - name: Get pip cache dir
-        id: pip-cache
-        run: echo "::set-output name=dir::$(pip cache dir)"
-
-      - name: Cache dependencies
-        uses: actions/cache@v3
-        with:
-          path: ${{ steps.pip-cache.outputs.dir }}
-          key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
-          restore-keys: |
-            ${{ runner.os }}-pip-
-
       - name: Install dependencies
         run: python3 -m pip install -r ./requirements.txt
 
@@ -48,7 +37,7 @@ jobs:
           GITHUB_BRANCH: 'main'
         run: ./deploy_docs_action.sh
 
-      - name: Build docs 
+      - name: Build docs
         if: ${{ endsWith(github.ref, 'development') }}
         env:
           GITHUB_BRANCH: 'development'
@@ -59,4 +48,4 @@ jobs:
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: ./out
-          keep_files: true
+          keep_files: true

.github/workflows/gpu_action.yml

@@ -5,7 +5,7 @@ jobs:
   gpu-compilation:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/hip.yml

@@ -10,7 +10,7 @@ jobs:
   hip-compile:
     runs-on: ubuntu-20.04
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/mhd-compare.yml

@@ -5,7 +5,7 @@ jobs:
   OrszagTang-3d:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/rad-compare.yml

@@ -5,7 +5,7 @@ jobs:
   Rad2Tshock-1d:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/reacting-convergence-true-sdc.yml

@@ -5,7 +5,7 @@ jobs:
   reacting-convergence-true-sdc:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/sedov-compare.yml

@@ -5,7 +5,7 @@ jobs:
   Sedov-3d:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/uniform_cube.yml

@@ -5,7 +5,7 @@ jobs:
   uniform_cube:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/uniform_sphere.yml

@@ -5,7 +5,7 @@ jobs:
   uniform_sphere:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/wdmerger_collision-compare.yml

@@ -5,7 +5,7 @@ jobs:
   wdmerger_collision-2d:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

CHANGES.md

@@ -1,3 +1,13 @@
+# 24.01
+
+  * An option for unlimited PPM reconstruction was added (#2670)
+
+  * An option allowing for optional passive sources to the conserved
+    state was added (#2678)
+
+  * A script `diag_parser.py` was added to allow for easy parsing of
+    the global diagnostic files output at runtime (#2666, #2667)
+
 # 23.12
 
   * The radiation solver port to C++ has been completed (#2638, #2648)

Docs/preprocess_files.py

@@ -1,5 +1,5 @@
 """
-This script strips out preprocessor directives from C++ headers and Fortran files
+This script strips out preprocessor directives from C++ headers
 and saves the results in source/preprocessed_files
 """
 
@@ -17,8 +17,7 @@ def strip_directives(filename, filepath, outpath):
     Read in file, remove all preprocessor directives and output.
 
     This is also going to switch square brackets initializing arrays to 
-    parentheses and remove the new-line characters in these so sphinx 
-    fortran is happy.
+    parentheses and remove the new-line characters
     """
 
     with open(os.path.join(filepath, filename)) as infile: