Code

Pull requests#85

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AugustT merged 46 commits intoBiologicalRecordsCentre:masterBiologicalRecordsCentre/BRCindicators:masterfrom DylanCarbone:pull_requestsDylanCarbone/BRCindicators:pull_requestsCopy head branch name to clipboardApr 18, 2024

+1,730-1,260

Commits

Commits on Feb 26, 2024

• minor fixes to vignette

  DylanCarbone

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Commits on Feb 27, 2024

• Changed testthat to 3e, update to CompositeTrend.r function

  DylanCarbone

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Commits on Feb 28, 2024

• Fixes to CompositeTrend function, removing numeric indices used for iteration and speices columns and removing misleading error message.

  DylanCarbone

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• Test and helper file for CompositeTrend function

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Commits on Mar 13, 2024

• New tests and helper functions for functions bma(), CompositeTrend(), and bootstrap_indicator(), and small changes to functions

  DylanCarbone

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• setup of CI

  DylanCarbone

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  90a11cb

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• CI setup

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  8c1045c

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• documentation

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• CI enabled on branch

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  ce8267b

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• fix of duplicate test

  DylanCarbone

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  163971a

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• test of remote sparta installation

  DylanCarbone

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  b91df5b

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Commits on Mar 22, 2024

• Fix of spelling mistake

  DylanCarbone

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  ef2a571

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• Fix of spelling mistake

  DylanCarbone

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  50a8a55

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• fix of duplicate test

  DylanCarbone

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  f37db43

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• change to gitignore

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• revert "test of remote sparta installation"

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Commits on Apr 2, 2024

• small changes to lambda indicator function

  DylanCarbone

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  a10bab3

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• Attempt to install sparta via remotes

  DylanCarbone

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  6f672ec

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• minor fix to description

  DylanCarbone

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  c773474

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• Small error fix

  DylanCarbone

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  2e4f2fb

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• test of pkgdepends installation

  DylanCarbone

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  6f97faf

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• test of ignoring vignette compilation

  DylanCarbone

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  f8ca3dd

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• split apart misc functions for easier navigation

  DylanCarbone

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  04f5368

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• test to see if this prevents GHA compiling vignette

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Commits on Apr 3, 2024

• another test of continuous integration

  DylanCarbone

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  0a48c04

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• This should fix CI

  DylanCarbone

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  eafb881

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• delete test file

  DylanCarbone

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  db27ee5

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• silly error fix

  DylanCarbone

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  6d518fc

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• fix of syntax error

  DylanCarbone

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Commits on Apr 8, 2024

• fix to description syntax

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  6fbb7fe

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Commits on Apr 17, 2024

• Restored ZX; Moved helper functions to misc folder

  DylanCarbone

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• Removal of misc folder fixes test run requiring misc functions

  DylanCarbone

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  384fa65

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• Removed exports of functions that will be ran internally

  DylanCarbone

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• Returned codecov to readme md for pull_requests

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• ruling out causes of requireNamespace failure to detect absence of JAGS installation

  DylanCarbone

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  29cdfce

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• test of run_jags package to see whether it can detect JAGS installation within GHA

  DylanCarbone

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  23f48d1

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• jagsUI and runjags moved to Imports

  DylanCarbone

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  6258b2a

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• remove warnings from JAGS detection

  DylanCarbone

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  24b9a21

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• fix to detect jags

  DylanCarbone

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  d7b9d03

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• added skips for when there is no JAGS installation

  DylanCarbone

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  33b8046

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• Fix to bma example

  DylanCarbone

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  5a3db0c

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• forgot to document

  DylanCarbone

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  f5e5e7f

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• Added documentation for detect JAGS function

  DylanCarbone

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  edb7940

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• Fix of import error

  DylanCarbone

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  556d71b

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• Merge branch 'master' into pull_requests; changed readme badge

  DylanCarbone

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  0eb932b

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• Fix of R CMD check badge

  DylanCarbone

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