Fix Demo Bugs (#43)

* Bathy Bug

* Remove tides from pytet demo

* Try adding ipykernel

demos/reanalysis-forced.ipynb

@@ -355,6 +355,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
+    "# NBVAL_SKIP\n",
+    "# Tidal files are not available in the repository, and must be requested from the TPXO website\n",
     "expt.setup_boundary_tides(\n",
     "        tide_h_path,\n",
     "        tide_u_path,\n",
@@ -440,7 +442,8 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "expt.setup_run_directory(surface_forcing = \"era5\", with_tides = True)"
+    "expt.setup_run_directory(surface_forcing = \"era5\", with_tides = False)\n",
+    "# When tides files are found, run the previous command with parameter with_tides = True"
    ]
   },
   {

docs/requirements.txt

@@ -2,3 +2,4 @@ myst-parser
 sphinx-book-theme
 nbsphinx
 IPython
+ipykernel

regional_mom6/regional_mom6.py

@@ -2022,8 +2022,8 @@ def tidy_bathymetry(
         bathymetry = xr.Dataset(
             {"depth": (["ny", "nx"], bathymetry[vertical_coordinate_name].values)},
             coords={
-                "lon": (["nx", "ny"], bathymetry[longitude_coordinate_name].values),
-                "lat": (["nx", "ny"], bathymetry[latitude_coordinate_name].values),
+                "lon": (["ny", "nx"], bathymetry[longitude_coordinate_name].values),
+                "lat": (["ny", "nx"], bathymetry[latitude_coordinate_name].values),
             },
         )
         bathymetry.attrs["depth"] = "meters"