Update the candig-data-portal ref (#251)

* Update the candig-data-portal ref * Also increment the version of data-portal * Update katsu, fix integration tests (#253) * Update the candig-data-portal ref * Also increment the version of data-portal --------- Co-authored-by: Son Chau <[email protected]> Co-authored-by: Daisie Huang <[email protected]>
CanDIG · Jul 22, 2023 · 15db896 · 15db896
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diff --git a/etc/env/example.env b/etc/env/example.env
@@ -270,7 +270,7 @@ OPA_SITE_ADMIN_KEY=site_admin
 
 
 # candig-data-server (previously mcode)
-CANDIG_DATA_PORTAL_VERSION=v0.1.8
+CANDIG_DATA_PORTAL_VERSION=v0.1.9
 CANDIG_DATA_PORTAL_PORT=2543
 CANDIG_DATA_PORTAL_URL=http://${CANDIG_DOMAIN}:${CANDIG_DATA_PORTAL_PORT}/data-portal
 CANDIG_DATA_PORTAL_PRIVATE_URL=http://candig-data-portal:3000

diff --git a/lib/candig-data-portal/candig-data-portal b/lib/candig-data-portal/candig-data-portal
+33 −0		.github/pull_request_template.md
+165 −21		LICENSE
+6 −0		PULL_REQUEST_TEMPLATE/stable_pr_template.md
+2 −0		package.json
+1 −0		public/logo.svg
+27 −13		src/assets/scss/_themes-vars.module.scss
+6 −3		src/index.js
+11 −5		src/layout/MainLayout/Header/index.js
+51 −0		src/layout/MainLayout/Sidebar/SidebarContext.js
+5 −3		src/layout/MainLayout/Sidebar/index.js
+42 −40		src/layout/MainLayout/index.js
+0 −32		src/menu-items/clinical.js
+0 −34		src/menu-items/genomicsData.js
+1 −3		src/menu-items/index.js
+0 −14		src/routes/MainRoutes.js
+106 −47		src/store/api.js
+130 −5		src/store/constant.js
+1 −1		src/store/customizationReducer.js
+1 −1		src/themes/index.js
+7 −0		src/themes/palette.js
+25 −22		src/ui-component/cards/SmallCountCard.js
+55 −1		src/utils/utils.js
+90 −0		src/views/clinicalGenomic/SearchResultsContext.js
+127 −623		src/views/clinicalGenomic/clinicalGenomicSearch.js
+361 −0		src/views/clinicalGenomic/search/SearchHandler.js
+106 −0		src/views/clinicalGenomic/widgets/clinicalData.js
+262 −0		src/views/clinicalGenomic/widgets/dataVisualization.js
+106 −0		src/views/clinicalGenomic/widgets/genomicData.js
+141 −0		src/views/clinicalGenomic/widgets/patientCountSingle.js
+108 −0		src/views/clinicalGenomic/widgets/patientCounts.js
+261 −0		src/views/clinicalGenomic/widgets/patientView.js
+416 −0		src/views/clinicalGenomic/widgets/sidebar.js
+1 −2		src/views/errorPages/ErrorNotFoundPage.js
+73 −164		src/views/genomicsData/VariantsSearch.js
+369 −74		src/views/summary/CustomOfflineChart.js
+7 −69		src/views/summary/TreatingCentreMap.js
+261 −173		src/views/summary/summary.js
+43 −0		src/views/utilities/Color.js