Merge pull request #77 from CanDIG/feature/map_multisample_2

Add a mapping for the multisample_2 sample ingested during integration tests
CanDIG · Mar 5, 2024 · 7dc1375 · 7dc1375
2 parents 6808db2 + b29cfa3
commit 7dc1375
Showing 1 changed file with 31 additions and 4 deletions.
diff --git a/tests/genomic_ingest.json b/tests/genomic_ingest.json
@@ -43,10 +43,37 @@
                 "genomic_file_sample_id": "TUMOR",
                 "submitter_sample_id": "SAMPLE_REGISTRATION_4"
             },
-			{
-				"genomic_file_sample_id": "NORMAL",
-				"submitter_sample_id": "SPECIMEN_5"
-			}
+            {
+                "genomic_file_sample_id": "NORMAL",
+                "submitter_sample_id": "SPECIMEN_5"
+            }
+        ]
+    },
+    {
+        "program_id": "SYNTHETIC-2",
+        "genomic_file_id": "multisample_2",
+        "main": {
+            "access_method": "file:////app/htsget_server/data/files/multisample_2.vcf.gz",
+            "name": "multisample_2.vcf.gz"
+        },
+        "index": {
+            "access_method": "file:////app/htsget_server/data/files/multisample_2.vcf.gz.tbi",
+            "name": "multisample_2.vcf.gz.tbi"
+        },
+        "metadata": {
+            "sequence_type": "wgs",
+            "data_type": "variant",
+            "reference": "hg38"
+        },
+        "samples": [
+            {
+                "genomic_file_sample_id": "TUMOR",
+                "submitter_sample_id": "SAMPLE_REGISTRATION_1"
+            },
+            {
+                "genomic_file_sample_id": "NORMAL",
+                "submitter_sample_id": "SAMPLE_REGISTRATION_2"
+            }
         ]
     },
     {