v2.0.0: Ingest microservice

Summary

• Large change involving the move from multiple .json files to a singular .json file import, as well as the introduction of this repo as a microservice within CanDIG

What's Changed

• Ingest into katsu without auth enabled by @daisieh in #2
• add awscli to requirements by @kcranston in #3
• DIG-895: switch to using candigv2-authx module by @daisieh in #4
• DIG-931: update to match CanDIG/candigv2-authx#3 by @daisieh in #5
• moving settings.py to CanDIGv2 repo by @daisieh in #6
• Small tweaks for UX by @daisieh in #7
• Sonchau/moh ingest by @SonQBChau in #9
• Update README.md by @SonQBChau in #10
• Update moh_ingest.py by @SonQBChau in #11
• Sonchau/hotfix katsu url by @SonQBChau in #12
• Sonchau/hotfix katsu url by @SonQBChau in #13
• Sonchau/update 110 by @SonQBChau in #14
• Sonchau/rename moh katsu by @SonQBChau in #15
• DIG-1143: Sample DRS objects on htsget ingest by @daisieh in #17
• fix token timeout by @SonQBChau in #19
• Sonchau/delete datasets by @SonQBChau in #20
• change license to lgpl-3 by @kcranston in #21
• Validated clinical sample data by @daisieh in #22
• Update katsu_ingest.py by @SonQBChau in #23
• DIG-1188: Create microservice & API for ingest by @justin-ys in #18
• HTSGet stubs by @justin-ys in #26
• New API + schema for htsget/katsu ingest by @justin-ys in #27
• Add ETL validation by @justin-ys in #28
• DIG-1280: Detailed error codes for clinical ingest by @justin-ys in #29
• Remove Katsu Trailing Slash option by @justin-ys in #30
• Update README by @justin-ys in #31
• Add CanDIGv2 PR dispatch by @justin-ys in #32
• DIG-1223: clinical data ingest accepts metadata about cohorts by @daisieh in #33
• Sonchau/katsu ingest in batch by @SonQBChau in #34
• DIG-1305: Switch to debian by @daisieh in #35
• DIG-1342: Remove extraneous code from ingest by @daisieh in #36
• DIG-1346: only fail on validation errors, not warnings by @daisieh in #38
• DIG-1344: IDs only need to be unique within a schema by @daisieh in #37

New Contributors

• @SonQBChau made their first contribution in #9
• @justin-ys made their first contribution in #18

Full Changelog: v1.0.1...v2.0.0