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v3.0.0: refactoring, new authx

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@daisieh daisieh released this 01 Feb 20:07
· 256 commits to develop since this release
721ff7a

Highlights

  • HTSGet ingest significantly improved
  • genomic ingest is validated
  • dataset access adding/updating
  • new authx

What's Changed

  • DIG-1360: ingest can ingest clinical data from multiple programs by @daisieh in #40
  • [Snyk] Fix for 9 vulnerabilities by @daisieh in #42
  • Add testing for clinical ingest by @justin-ys in #16
  • DIG-1357, DIG-1356, DIG-1272: testing and refactor of htsget ingest by @daisieh in #43
  • Picking up Marion's suggestions from #43 by @daisieh in #44
  • Improved README and identifier refactoring by @mshadbolt in #45
  • Hotfix: don't try to ingest program if not valid by @daisieh in #46
  • Add validation for genomic input format by @daisieh in #47
  • adding endpoints for adding/removing user/program access by @daisieh in #48
  • DIG-1388: update candig-ingest with new katsu endpoints by @daisieh in #49
  • DIG-1219: import clinical_etl_code as a package instead of a submodule by @daisieh in #50
  • DIG-1144: Update to Python 3.12 by @daisieh in #51
  • DIG-1402: Update to new vault-based auth methods by @daisieh in #52
  • hotfix: change genomic_file_id to match file names by @daisieh in #53

New Contributors

Full Changelog: v2.0.0...v3.0.0