Merge branch 'main' into mshadbolt/docs-and-error-handling #358

	name: Github Actions Test

	on: [push]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10"]

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install dependencies
	run: \|
	pip install -r requirements.txt
	- name: Test with pytest
	run: \|
	pytest
	- name: Compare moh_template.csv
	shell: bash {0}
	run: \|
	python generate_schema.py
	diff template.csv moh_template.csv > curr_diff.txt
	bytes=$(head -5 curr_diff.txt \| wc -c)
	dd if=curr_diff.txt bs="$bytes" skip=1 conv=notrunc of=curr_diff.txt
	diff curr_diff.txt test_data/moh_diffs.txt
	if [[ $? == 1 ]]; then echo MoH template checking needs to be updated! See https://github.com/CanDIG/clinical_ETL_code#mapping-template for information.
	exit 1
	fi

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