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updates for latest version
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mshadbolt committed Sep 24, 2024
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2 changes: 1 addition & 1 deletion pyproject.toml
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Expand Up @@ -3,7 +3,7 @@ requires = ["setuptools >= 61.0"]
build-backend = "setuptools.build_meta"

[project]
version = "3.0.0"
version = "3.1.0"
name = "clinical_ETL"
dependencies = [
"pandas>=2.1.0",
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6 changes: 3 additions & 3 deletions src/clinical_ETL.egg-info/PKG-INFO
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Metadata-Version: 2.1
Name: clinical_ETL
Version: 3.0.0
Version: 3.1.0
Summary: ETL module for transforming clinical CSV data into properly-formatted packets for ingest into Katsu
Project-URL: Repository, https://github.com/CanDIG/clinical_ETL_code
Requires-Python: >=3.10
Expand Down Expand Up @@ -80,7 +80,7 @@ All rows must contain identifiers that allow linkage between the objects in the

Data should be [tidy](https://r4ds.had.co.nz/tidy-data.html), with each variable in a separate column, each row representing an observation, and a single data entry in each cell. In the case of fields that can accept an array of values, the values within a cell should be delimited such that a mapping function can accurately return an array of permissible values.

If you are working with exports from RedCap, the sample files in the [`sample_inputs/redcap_example`](sample_inputs/redcap_example) folder may be helpful.
If you are working with exports from RedCap, the sample files in the [`sample_inputs/redcap_example`](sample_inputs/redcap_example) folder may be helpful.

### Setting up a cohort directory

Expand Down Expand Up @@ -191,7 +191,7 @@ A summarised example of the output is below:

```json
{
"openapi_url": "https://raw.githubusercontent.com/CanDIG/katsu/develop/chord_metadata_service/mohpackets/docs/schema.yml",
"openapi_url": "https://raw.githubusercontent.com/CanDIG/katsu/develop/chord_metadata_service/mohpackets/docs/schemas/schema.yml",
"katsu_sha": < git sha of the katsu version used for the schema >,
"donors": < An array of JSON objects, each one representing a DonorWithClinicalData in katsu >,
"statistics": {
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