remove unused args and imports

validate_coverage.py

@@ -1,23 +1,24 @@
 import argparse
 import json
 import sys
-import yaml
-import jsonschema
-import os
-import re
-import CSVConvert
 import mappings
-from copy import deepcopy
 from mohschema import MoHSchema
-from jsoncomparison import Compare
+# from jsoncomparison import Compare
+# from copy import deepcopy
+# import yaml
+# import jsonschema
+# import os
+# import re
+# import CSVConvert
 
 
 def parse_args():
     parser = argparse.ArgumentParser()
-    parser.add_argument('--manifest', type=str, help="Path to a manifest file describing the mapping.", required=False)
-    parser.add_argument('--json', type=str, help="<input-file-path-name>_map.json file generated by CSVConvert.py.", required=True)
-    parser.add_argument('--input', type=str, required=False, help="Directory to the raw clinical data used for creating the JSON file.")
+    parser.add_argument('--json', type=str, help="<input-file-path-name>_map.json file generated by CSVConvert.py.",
+                        required=True)
     parser.add_argument('--verbose', '--v', action="store_true", help="Print extra information")
+    # parser.add_argument('--manifest', type=str, help="Path to a manifest file describing the mapping.", required=False)
+    # parser.add_argument('--input', type=str, required=False, help="Directory to the raw clinical data used for creating the JSON file.")
     args = parser.parse_args()
     return args
 
@@ -199,7 +200,7 @@ def parse_args():
 #                     missing.append(comment_match.group(2))
 #     print("\n".join(missing))
 
-def validate_coverage(map_json, input_path=None, verbose=False):
+def validate_coverage(map_json, verbose=False):
     if verbose:
         mappings.VERBOSE = True
 
@@ -237,9 +238,9 @@ def main(args):
         sys.exit(f"No {e} key found in the provided map json, please check you are providing the right file and "
                  "try again, it should end with '_map.json'.")
 
-    input_path = args.input
+    # input_path = args.input
     verbose = True if args.verbose else False
-    result = validate_coverage(map_json, input_path, verbose)
+    result = validate_coverage(map_json, verbose)
     if len(result["warnings"]) > 0:
         print("Mapping has missing data:")
         for line in result["warnings"]: