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update readme
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yavyx committed Apr 30, 2024
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Expand Up @@ -48,7 +48,7 @@ pip install -r requirements.txt
>[!NOTE]
> If Python can't find the `clinical_etl` module when running `CSVConvert`, install the depencency manually:
> ```
> pip install -e clinical_ETL_code
> pip install -e clinical_ETL_code/
> ```
Before running the script, you will need to have your input files, this will be clinical data in a tabular format (`xlsx`/`csv`) that can be read into program and a cohort directory containing the files that define the schema and mapping configurations.
Expand Down Expand Up @@ -155,7 +155,7 @@ Validation will automatically be run after the conversion is complete. Any valid
>[!NOTE]
> If Python can't find the `clinical_etl` module when running `CSVConvert`, install the depencency manually:
> ```
> pip install -e clinical_ETL_code
> pip install -e clinical_ETL_code/
> ```
#### Format of the output files
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