Merge pull request #328 from CanDIG/develop

Hotfix: pick up database connection fixes
CanDIG · Oct 10, 2024 · 5ee8a70 · 5ee8a70
2 parents 07de505 + 420c8b9
commit 5ee8a70
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Showing 5 changed files with 222 additions and 166 deletions.
diff --git a/config.ini b/config.ini
@@ -3,6 +3,7 @@ Port = 3000
 BasePath = /htsget/v1
 ChunkSize = 1000000
 BucketSize = 10000
+MaxTries = 5
 AGGREGATE_COUNT_THRESHOLD = <AGGREGATE_COUNT_THRESHOLD>
 
 [paths]

diff --git a/entrypoint.sh b/entrypoint.sh
@@ -22,7 +22,7 @@ candigv2_logging.logging.initialize()"
 # use the following for development
 #python3 htsget_server/server.py
 
-python htsget_server/indexing.py &
+bash htsget_server/indexing.sh &
 
 # use the following instead for production deployment
 cd htsget_server

diff --git a/htsget_server/config.py b/htsget_server/config.py
@@ -27,6 +27,8 @@
 
 AGGREGATE_COUNT_THRESHOLD = config['DEFAULT']['AGGREGATE_COUNT_THRESHOLD']
 
+MAX_TRIES = int(config['DEFAULT']['MaxTries'])
+
 TEST_KEY = os.getenv("HTSGET_TEST_KEY", "testtesttest")
 
 DEBUG_MODE = False